You are here

PyRosetta - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,176 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,371 by Sergey
Mon, 2014-04-21 06:48
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,687 by ac.research
Fri, 2017-06-30 05:44
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
1,098 by yijietseng
Wed, 2019-05-22 09:54
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
3,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
675 by yijietseng
Wed, 2019-07-10 09:28
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15
3
4,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,489 by rmoretti
Wed, 2015-10-07 16:35
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
2,704 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
807 by smlewis
Tue, 2019-07-23 13:27
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
2,937 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Using OStream objects in PyRosetta
by ggyimesi » Mon, 2014-02-10 03:10
3
2,866 by ggyimesi
Mon, 2014-02-17 09:52
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
2,356 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
3
446 by matteoferla
Fri, 2020-08-07 03:29
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42
3
2,104 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
2,603 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
3,200 by StevPChem
Thu, 2015-08-06 11:07
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
3,183 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59
3
2,705 by weitzner
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
4,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
3,019 by rmoretti
Tue, 2014-09-23 08:36
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
508 by rmoretti
Thu, 2020-07-09 08:35
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
3,419 by Sergey
Fri, 2015-03-27 14:34
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30
3
2,419 by juden99
Mon, 2014-04-21 06:47
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
2,727 by galvaner
Mon, 2015-09-21 13:37
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57
3
3,177 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
2,705 by rmoretti
Tue, 2015-12-01 15:18
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
2,619 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
2,728 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,174 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
969 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,060 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
2,859 by smlewis
Mon, 2014-04-21 06:47
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
3,452 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,340 by Apiwat
Mon, 2014-04-21 06:48
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
3,022 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,302 by LiorZ
Fri, 2016-06-17 08:20
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
1,265 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
3,740 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18
3
3,534 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
1,791 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
357 by Peik
Thu, 2020-08-06 11:50
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,138 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
2,789 by Sergey
Wed, 2015-08-19 15:47
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
1,321 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
2,573 by Sergey
Mon, 2014-04-21 06:48
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
2,262 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
550 by matteoferla
Sat, 2020-07-25 03:52
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
1,835 by lah435
Fri, 2017-06-16 12:24
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
4,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
1,612 by rmoretti
Sat, 2017-12-16 14:06
Normal topic How to fold membrane protein in PyRosetta?
by assignfit » Fri, 2011-02-25 21:39
3
2,816 by assignfit
Mon, 2014-04-21 06:47
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
2,760 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57
3
2,887 by msellers
Mon, 2014-04-21 06:47
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
3,122 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
2,919 by smlewis
Mon, 2014-04-21 06:47
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
323 by vmulligan
Tue, 2020-10-06 15:13
Normal topic [Solved] Docking in metalloprotease (Zinc problem)
by zgcarvalho » Wed, 2010-01-20 16:04
3
3,514 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
3,066 by Victor
Mon, 2014-04-21 06:47
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40
4
3,335 by rmoretti
Mon, 2014-04-21 06:48
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
2,893 by rmoretti
Thu, 2019-05-09 15:03
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
1,784 by ac.research
Fri, 2018-05-11 15:46
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
5,049 by MarkW
Mon, 2015-08-24 04:43
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
3,837 by ajasja
Thu, 2014-07-03 05:53
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
4,763 by Sergey
Mon, 2014-04-21 06:48
Normal topic De novo loop modeling using pyrosetta
by bharat_46010 » Sun, 2011-01-16 17:38
4
3,692 by Sergey
Mon, 2014-04-21 06:47
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50
4
1,919 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
2,844 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
4,939 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
2,973 by Victor
Mon, 2014-04-21 06:48
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
2,927 by dsim
Mon, 2014-09-15 07:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47
4
2,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you combine two .pdb protein structure files of the same protein?
by nasim.soltani58 » Sun, 2020-11-22 23:14
4
229 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,396 by nawsad
Sun, 2014-07-13 00:49
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
3,596 by smlewis
Tue, 2015-11-03 09:17
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
3,850 by Sergey
Fri, 2015-04-10 11:25
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21
4
4,456 by smlewis
Mon, 2014-04-21 06:47
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,234 by cossio
Wed, 2015-04-15 12:31
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
5,414 by ajasja
Mon, 2014-09-22 09:51
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
2,282 by gerdos
Fri, 2017-04-21 01:53
Normal topic Strange fold tree problem with classic and fast relax
by jadolfbr » Mon, 2011-03-21 11:58
4
3,491 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
4,931 by seanle24245
Fri, 2016-07-22 06:53
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
3,646 by xfliu
Mon, 2014-04-21 06:47
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
5,091 by rmoretti
Mon, 2014-07-21 11:15
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35
5
247 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
3,251 by AOK
Mon, 2014-04-21 06:47
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
4,435 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
4,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
4,301 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
6,932 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
5,054 by rmoretti
Mon, 2014-10-06 14:37
Normal topic Decoy Clustering
by jadolfbr » Mon, 2010-02-01 22:50
5
3,777 by nawsad
Mon, 2014-04-21 06:47
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
2,345 by MNP1986
Mon, 2018-12-03 04:02
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,400 by rmoretti
Thu, 2017-07-06 12:49
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
3,193 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
2,647 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29
5
4,288 by eberhardt
Mon, 2014-04-21 06:47
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
3,542 by rmoretti
Mon, 2016-11-14 13:21
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General