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PyRosetta - General

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Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
13,554 by ajasja
Mon, 2014-09-22 10:17
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
2,949 by rmoretti
Tue, 2014-09-23 08:36
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
1,866 by ajasja
Wed, 2014-09-24 08:57
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
2,867 by rmoretti
Mon, 2014-09-29 00:06
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
4,316 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
4,968 by rmoretti
Mon, 2014-10-06 14:37
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
2,805 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
2,569 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,143 by ajasja
Thu, 2014-10-30 08:32
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,010 by cossio
Fri, 2014-11-28 05:05
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
3,642 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
8,726 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,424 by MarkW
Sun, 2015-02-08 14:14
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
2,078 by protos_heis
Fri, 2015-02-27 13:38
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
2,194 by bbrown11
Wed, 2015-03-04 18:49
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,687 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
5,024 by Sergey
Wed, 2015-03-18 11:22
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
3,349 by Sergey
Fri, 2015-03-27 14:34
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
3,761 by Sergey
Fri, 2015-04-10 11:25
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,160 by cossio
Wed, 2015-04-15 12:31
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,459 by rmoretti
Fri, 2015-04-24 13:17
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
27,024 by msun
Fri, 2015-07-10 11:03
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
2,648 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
3,123 by StevPChem
Thu, 2015-08-06 11:07
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,583 by rmoretti
Wed, 2015-08-12 10:29
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
7,840 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
2,705 by Sergey
Wed, 2015-08-19 15:47
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
4,936 by MarkW
Mon, 2015-08-24 04:43
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
2,648 by galvaner
Mon, 2015-09-21 13:37
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,427 by rmoretti
Wed, 2015-10-07 16:35
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,551 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
1,695 by rmoretti
Mon, 2015-10-26 13:57
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
2,106 by rmoretti
Tue, 2015-10-27 08:46
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
3,492 by smlewis
Tue, 2015-11-03 09:17
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
2,636 by rmoretti
Tue, 2015-12-01 15:18
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
1,587 by rmoretti
Wed, 2015-12-16 11:25
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
9,918 by rmoretti
Thu, 2016-02-18 14:22
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
4,701 by rmoretti
Fri, 2016-04-29 09:48
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,231 by LiorZ
Fri, 2016-06-17 08:20
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
3,077 by rmoretti
Fri, 2016-06-17 09:25
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
4,769 by seanle24245
Sun, 2016-06-19 18:30
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
1,238 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
4,751 by seanle24245
Fri, 2016-07-22 06:53
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,646 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
3,663 by smlewis
Wed, 2016-08-24 14:23
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
1,216 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
4,720 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
1,144 by Labonte
Thu, 2016-10-06 14:05
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
3,441 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
4,638 by dsim
Tue, 2016-11-22 08:11
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
2,174 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
1,156 by Sergey
Tue, 2017-01-31 13:42
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
2,892 by gerdos
Tue, 2017-04-18 10:15
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
2,181 by gerdos
Fri, 2017-04-21 01:53
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
2,998 by jshen2
Sat, 2017-05-13 08:14
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,373 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
4,392 by smlewis
Sat, 2017-06-10 15:15
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,529 by rmoretti
Fri, 2017-06-16 07:22
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
1,763 by lah435
Fri, 2017-06-16 12:24
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,231 by parmef
Sat, 2017-06-24 03:18
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,612 by ac.research
Fri, 2017-06-30 05:44
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
4,784 by ac.research
Wed, 2017-07-05 16:59
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,573 by ac.research
Thu, 2017-07-06 11:09
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,260 by rmoretti
Thu, 2017-07-06 12:49
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
3,796 by ac.research
Fri, 2017-07-14 12:55
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
3,181 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,524 by Sergey
Thu, 2017-08-31 04:39
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,352 by rmoretti
Mon, 2017-09-04 09:52
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
3,503 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
2,494 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
1,688 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Fragment Picking in PyRosetta
by ac.research » Thu, 2017-08-31 04:48
9
4,522 by rmoretti
Tue, 2017-10-10 09:16
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
1,208 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
1,384 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,381 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,049 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
670 by tschiex
Sun, 2017-11-05 08:29
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
780 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
798 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
904 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
1,608 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Score Function with Constraints
by ac.research » Fri, 2017-07-28 06:41
6
3,584 by ac.research
Sat, 2017-12-09 02:15
Normal topic EnergyMethodCreator error when writing custom energy method
by furybubu » Mon, 2017-12-11 15:46
2
1,118 by furybubu
Tue, 2017-12-12 10:04
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
741 by rmoretti
Sat, 2017-12-16 10:47
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
1,517 by rmoretti
Sat, 2017-12-16 14:06
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21
1
857 by walcob
Mon, 2018-01-29 11:22
Normal topic generate_nonstandard_residue_set() takes exactly 2 arguments (1given)
by yanghaobjordan » Mon, 2018-01-29 18:59
1
1,124 by rmoretti
Tue, 2018-01-30 06:29
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28
2
975 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44
7
3,893 by Sazhnyev
Tue, 2018-03-13 15:55
Normal topic Fix corrupted Backbone
by ac.research » Mon, 2018-03-05 12:48
7
2,391 by ac.research
Tue, 2018-03-13 21:36
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
647 by ac.research
Thu, 2018-03-29 07:50
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05
2
1,200 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic An issue with GenericMonteCarloMover()
by ac.research » Wed, 2018-03-07 13:57
13
3,686 by ac.research
Fri, 2018-05-11 10:59
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
1,646 by ac.research
Fri, 2018-05-11 15:46
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
1,944 by Sergey
Tue, 2018-05-15 11:20
Normal topic Error while converting mol2 to params using molfile_to_params.py
by ahmadkhalifa » Thu, 2018-06-14 10:30
7
2,728 by rmoretti
Thu, 2018-06-28 12:04
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
946 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
805 by rmoretti
Sat, 2018-06-30 02:37
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
869 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Folding Video
by ac.research » Sat, 2018-05-12 09:19
1
825 by rmoretti
Sat, 2018-06-30 02:38
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