You are here
PyRosetta - General
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
interaction energies between atoms by Stefan » Thu, 2011-04-14 06:15 |
3 |
6,002 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
installing PyRosetta on non-Intel-based Mac platform by sid » Tue, 2009-10-06 09:07 |
1 |
2,284 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
installing PyRosetta on Mac OSX 10.6 and Linux in VMWare by sid » Tue, 2009-10-06 09:04 |
2 |
4,252 |
by reve_etrange Mon, 2014-04-21 06:47 |
|
|
input_pdb by evo_umich » Sat, 2011-10-01 14:20 |
3 |
4,779 |
by evo_umich Mon, 2014-04-21 06:47 |
|
|
Initializing DockDesignParser in PyRosetta by LiorZ » Mon, 2013-04-22 01:56 |
6 |
6,570 |
by LiorZ Mon, 2014-04-21 06:47 |
|
|
individual residue score by yijietseng » Wed, 2019-05-29 09:59 |
2 |
2,372 |
by yijietseng Fri, 2019-05-31 12:21 |
|
|
Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..." by msellers » Wed, 2012-04-04 12:27 |
5 |
6,131 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
2 |
2,403 |
by Peik Fri, 2021-02-19 10:30 |
|
|
Inconsistencies in full atom energy calculations by dsim » Tue, 2014-07-29 06:02 |
4 |
4,755 |
by dsim Mon, 2014-09-15 07:47 |
|
|
ImportError PyUnicodeUCS2 by nunesjulioc » Wed, 2010-02-17 07:29 |
0 |
2,936 |
by nunesjulioc Mon, 2014-04-21 06:47 |
|
|
I don't know what's the problem when load the fragment file by john8611 » Mon, 2014-09-29 03:45 |
5 |
6,739 |
by rmoretti Tue, 2014-09-30 13:16 |
|
|
Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
1 |
1,508 |
by matteoferla Wed, 2021-06-30 09:02 |
|
|
hydrogen bond parameters used in detecting h-bonds by pyrosetta by bharat_46010 » Sun, 2013-07-21 23:44 |
1 |
2,698 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
How to use SAXS energy score in PyRosetta by Jie Hou » Mon, 2016-09-05 08:31 |
5 |
5,967 |
by rmoretti Mon, 2016-11-14 13:21 |
|
|
how to use constrains in PyRosetta? by ast » Mon, 2011-09-05 07:22 |
0 |
2,181 |
by ast Mon, 2014-04-21 06:47 |
|
|
How to tell where and what fragment or rotamer was inserted? by charlie.strauss » Wed, 2010-01-27 10:36 |
0 |
1,729 |
by charlie.strauss Mon, 2014-04-21 06:47 |
|
|
How to set up external C++ folding server by seanle24245 » Sat, 2016-06-11 10:54 |
8 |
8,294 |
by seanle24245 Sun, 2016-06-19 18:30 |
|
|
How to set options under PyRosetta by lennylv » Thu, 2011-01-06 18:11 |
1 |
3,774 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
How to relax glycans after glycosylating sites on a pose? by sdtruong » Mon, 2021-03-22 09:44 |
2 |
1,667 |
by sdtruong Mon, 2021-03-22 17:05 |
|
|
how to realize a free bb design? PackMover=fixed bb! by ast » Wed, 2011-08-31 09:41 |
1 |
3,540 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How To Read PyRosetta Documentation - GenericMonteCarloMover as example by ac.research » Wed, 2017-07-05 09:08 |
2 |
3,033 |
by ac.research Thu, 2017-07-06 11:09 |
|
|
how to read a silent file ? by Anonymous » Wed, 2012-06-27 09:34 |
12 |
11,971 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
How to pop off terminus variants by xfliu » Mon, 2012-09-03 03:12 |
2 |
3,235 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
How to optimize the orientations of polar hydrogens in PyRosetta by xfliu » Sat, 2012-04-28 16:33 |
5 |
5,949 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
0 |
1,273 |
by sarah_b Thu, 2020-05-14 02:37 |
|
|
How to fold membrane protein in PyRosetta? by assignfit » Fri, 2011-02-25 21:39 |
3 |
4,275 |
by assignfit Mon, 2014-04-21 06:47 |
|
|
How to determine interface residues by rbehan » Wed, 2015-10-14 11:25 |
2 |
5,505 |
by rmoretti Fri, 2016-06-17 09:25 |
|
|
How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
3 |
2,275 |
by matteoferla Thu, 2021-07-08 06:02 |
|
|
How to combine two chains by seanle24245 » Tue, 2016-07-19 07:54 |
5 |
8,671 |
by seanle24245 Fri, 2016-07-22 06:53 |
|
|
How to call SnugDock from PyRosetta by SenyorDrew » Tue, 2016-06-21 07:28 |
1 |
2,222 |
by jeliazkov Fri, 2016-07-01 08:42 |
|
|
How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types by AyushGoyal » Wed, 2014-01-22 16:24 |
7 |
9,114 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
how to add water into protein interface using solvated rotamers? by chinhsutran » Sun, 2013-07-21 20:25 |
1 |
2,595 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
How does Rosetta select atom pairs for Lennard Jones Potential calculations? by bowang2013 » Thu, 2015-10-29 08:04 |
4 |
5,580 |
by smlewis Tue, 2015-11-03 09:17 |
|
|
How does one convert a PDB file of an antibody to AHO scheme? by kylevaccaro » Mon, 2023-02-13 18:14 |
2 |
1,534 |
by kylevaccaro Wed, 2023-02-15 19:18 |
|
|
How does min_mover work? by anidude » Fri, 2022-03-04 07:30 |
1 |
2,154 |
by matteoferla Sun, 2022-03-20 02:53 |
|
|
How do you combine two .pdb protein structure files of the same protein? by nasim.soltani58 » Sun, 2020-11-22 23:14 |
4 |
5,567 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
|
|
how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
2 |
2,299 |
by matteoferla Fri, 2020-11-20 07:47 |
|
|
How do I insert or delete residues into specific locations? by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 |
1 |
1,705 |
by matteoferla Tue, 2021-01-05 03:53 |
|
|
how do I compile the python bindings for rosetta3 for python2.5 linux x86_64 by tru » Wed, 2009-11-25 11:38 |
1 |
2,354 |
by luki Mon, 2014-04-21 06:47 |
|
|
how can we calculate Rosetta score on some decoy set? by mirzaie » Wed, 2013-06-19 08:43 |
13 |
14,323 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
How can i introduce hydrogen bond as constraint? by sp1020 » Mon, 2012-04-02 05:12 |
1 |
3,042 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
0 |
951 |
by michelleqyh Tue, 2020-08-04 07:26 |
|
|
How can I automate mutations with PyRosetta or other Rosetta software? by archaeopteryx » Mon, 2023-07-03 19:35 |
7 |
1,615 |
by arjan-hada Sat, 2024-01-27 05:48 |
|
|
Help with pyRosetta python scripting for protein manipulation by pepfolder » Thu, 2012-05-31 14:01 |
5 |
6,473 |
by pepfolder Mon, 2014-04-21 06:47 |
|
|
Help on Chimera Creator/Homodomain script by jadolfbr » Mon, 2010-06-14 21:34 |
1 |
3,252 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction() by gerdos » Tue, 2017-04-18 04:46 |
4 |
4,353 |
by gerdos Fri, 2017-04-21 01:53 |
|
|
HBondEnergy by bharat_46010 » Wed, 2013-05-15 19:03 |
15 |
17,427 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Gunn fragment insertion by jadolfbr » Sun, 2010-02-28 09:39 |
0 |
1,738 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
3 |
2,578 |
by vmulligan Tue, 2020-10-06 15:13 |
|
|
Go parallel by assignfit » Tue, 2011-11-29 10:47 |
4 |
4,791 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Glycan minimization by seanle24245 » Thu, 2016-10-06 13:51 |
1 |
2,116 |
by Labonte Thu, 2016-10-06 14:05 |
|
|
Glycan in IgG1 Fc by seanle24245 » Fri, 2016-07-22 07:50 |
2 |
2,906 |
by jadolfbr Fri, 2016-07-22 10:29 |
|
|
Getting which rigid body a residue belongs to? by JuliusSu » Thu, 2014-04-17 21:12 |
3 |
4,155 |
by jadolfbr Mon, 2014-04-21 17:28 |
|
|
Getting interface residues? by JuliusSu » Wed, 2014-04-16 21:58 |
2 |
3,088 |
by JuliusSu Thu, 2014-04-17 18:34 |
|
|
Getting chi rotamers by ajasja » Tue, 2014-08-26 12:11 |
3 |
4,861 |
by rmoretti Tue, 2014-09-23 08:36 |
|
|
GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
1 |
2,129 |
by rmoretti Sat, 2018-06-30 02:37 |
|
|
Generating random number using numeric.random by resiros » Thu, 2014-10-23 09:25 |
3 |
4,117 |
by rmoretti Wed, 2014-10-29 10:00 |
|
|
Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
3 |
2,717 |
by Peik Thu, 2020-08-06 11:50 |
|
|
generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
2,449 |
by rmoretti Tue, 2018-01-30 06:29 |
|
|
generate_nonstandard_residue_set Exception by lah435 » Tue, 2017-06-13 18:28 |
3 |
3,465 |
by lah435 Fri, 2017-06-16 12:24 |
|
|
GDT_TS how can I get it with pyrosetta? by oppopomoz » Thu, 2014-01-09 02:51 |
1 |
2,738 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Fundamental methods: pose.residue().total_atom(), pose.atom(#) ? by msellers » Mon, 2010-11-01 10:53 |
1 |
2,633 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Frequently Asked Questions by sid » Fri, 2009-10-02 09:00 |
0 |
2,266 |
by sid Mon, 2014-04-21 06:47 |
|
|
Fragments picker: -nohom option seems not to work by oppopomoz » Tue, 2013-05-14 06:31 |
1 |
2,733 |
by linucks Mon, 2014-04-21 06:47 |
|
|
Fragments file by Run » Tue, 2013-11-26 02:40 |
4 |
5,138 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Fragment Quality by ac.research » Mon, 2017-07-10 10:23 |
9 |
7,619 |
by ac.research Fri, 2017-07-14 12:55 |
|
|
Fragment Picking in PyRosetta by ac.research » Thu, 2017-08-31 04:48 |
9 |
10,165 |
by rmoretti Tue, 2017-10-10 09:16 |
|
|
fragment for polyAAA by knutjbj » Mon, 2010-11-29 08:23 |
1 |
2,486 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fragment File Reading problem by Nuria » Tue, 2012-06-12 13:42 |
1 |
2,498 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fragment building by StevPChem » Tue, 2015-08-04 09:01 |
3 |
4,670 |
by StevPChem Thu, 2015-08-06 11:07 |
|
|
Forum webpage not working by ajasja » Mon, 2014-09-22 06:14 |
2 |
2,910 |
by ajasja Mon, 2014-09-22 09:53 |
|
|
Foldtree setup, jump problem in PyRosetta 2.0 by msellers » Thu, 2011-07-21 12:00 |
2 |
4,093 |
by msellers Mon, 2014-04-21 06:47 |
|
|
Folding Video by ac.research » Sat, 2018-05-12 09:19 |
1 |
2,051 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
Fold Tutorial by ac.research » Sat, 2017-06-03 19:39 |
7 |
8,785 |
by smlewis Sat, 2017-06-10 15:15 |
|
|
Fold tree not correct for multi-chain partners by msellers » Fri, 2010-12-10 05:35 |
6 |
7,082 |
by msellers Mon, 2014-04-21 06:47 |
|
|
Fix corrupted Backbone by ac.research » Mon, 2018-03-05 12:48 |
7 |
6,239 |
by ac.research Tue, 2018-03-13 21:36 |
|
|
FastRelax results in bad structure by Eden » Mon, 2021-04-26 08:39 |
2 |
1,844 |
by Eden Wed, 2021-06-23 01:13 |
|
|
Falling at the first hurdle by pardave » Tue, 2010-01-05 00:53 |
1 |
2,461 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Failure appending a residue by rfschleif » Thu, 2011-06-16 10:53 |
2 |
3,867 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
1 |
1,409 |
by matteoferla Wed, 2020-12-02 13:49 |
|
|
Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
||||
|
Executing the mc simulation of polyalanine fragment by bharat_46010 » Mon, 2011-01-17 19:18 |
8 |
8,337 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
2 |
3,003 |
by TensorDuck Mon, 2018-04-02 13:41 |
|
|
Errors when movers put in a function by rfschleif » Sat, 2011-10-08 08:41 |
5 |
5,179 |
by msellers Mon, 2014-04-21 06:47 |
|
|
ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
3 |
2,991 |
by rmoretti Thu, 2020-07-09 08:35 |
|
|
Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
1 |
1,887 |
by matteoferla Tue, 2021-01-05 04:05 |
|
|
Error with etable_atom_pair_energies() by yijietseng » Mon, 2019-01-28 14:00 |
2 |
3,328 |
by yijietseng Tue, 2019-05-07 11:02 |
|
|
Error while converting mol2 to params using molfile_to_params.py by ahmadkhalifa » Thu, 2018-06-14 10:30 |
7 |
7,391 |
by rmoretti Thu, 2018-06-28 12:04 |
|
|
Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
2,314 |
by zhangying1990 Fri, 2019-02-01 00:44 |
|
|
Error when trying to import 'get_secstruct' by quantumnumber » Thu, 2019-04-11 03:50 |
4 |
5,190 |
by quantumnumber Fri, 2019-05-10 02:25 |
|
|
Error when importing protocols.simple_filters by xfliu » Tue, 2012-10-16 13:37 |
8 |
7,602 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined" by jai_INMAS » Sun, 2013-10-20 05:22 |
1 |
2,584 |
by Labonte Mon, 2014-09-08 09:13 |
|
|
Error in loop modeling protocol by jai_INMAS » Fri, 2013-10-18 07:08 |
5 |
6,129 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Error in core/scoring/methods/VDW_Energy.cc line: 169 by pepfolder » Thu, 2012-05-31 11:13 |
2 |
4,509 |
by pepfolder Mon, 2014-04-21 06:47 |
|
|
Error getting MinMover attributes by assaff » Sun, 2012-03-25 10:54 |
6 |
6,236 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Enumerating torsion (dihedral) angles by ajasja » Wed, 2014-10-01 09:10 |
2 |
4,617 |
by rmoretti Mon, 2014-10-06 15:10 |
|
|
EnergyMethodCreator error when writing custom energy method by furybubu » Mon, 2017-12-11 15:46 |
2 |
2,713 |
by furybubu Tue, 2017-12-12 10:04 |
|
|
Energy scores of D-amino acids by jshen2 » Mon, 2017-05-08 10:15 |
7 |
6,139 |
by jshen2 Sat, 2017-05-13 08:14 |
|
|
Energy of individual loop/region by jadolfbr » Mon, 2012-04-02 13:15 |
3 |
3,646 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Energy Minimization by bharat_46010 » Wed, 2013-07-31 20:45 |
24 |
31,320 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Log in to post new content in the forum.
