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PyRosetta - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
3,949 by xfliu
Mon, 2014-04-21 06:47
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
2,784 by MNP1986
Mon, 2018-12-03 04:02
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,742 by rmoretti
Thu, 2017-07-06 12:49
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
3,550 by AOK
Mon, 2014-04-21 06:47
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
3,049 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
3,864 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
4,466 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
4,602 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
7,479 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
5,505 by seanle24245
Fri, 2016-07-22 06:53
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
5,380 by rmoretti
Mon, 2014-07-21 11:15
Normal topic Decoy Clustering
by jadolfbr » Mon, 2010-02-01 22:50
5
4,104 by nawsad
Mon, 2014-04-21 06:47
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35
5
683 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
3,431 by rmoretti
Mon, 2014-04-21 06:47
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
4,766 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Backbone didn't change in docking, why?
by SunH » Wed, 2010-06-02 10:07
6
4,165 by SunH
Mon, 2014-04-21 06:47
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
2,596 by Sergey
Tue, 2018-05-15 11:20
Normal topic Segmentation fault when reading VMD PDB
by msellers » Mon, 2011-01-03 07:14
6
6,915 by smlewis
Mon, 2014-04-21 06:47
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
4,181 by msellers
Mon, 2014-04-21 06:47
Normal topic Score Function with Constraints
by ac.research » Fri, 2017-07-28 06:41
6
4,370 by ac.research
Sat, 2017-12-09 02:15
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
5,580 by Sergey
Wed, 2015-03-18 11:22
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
4,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
4,459 by LiorZ
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
3,757 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Fold tree not correct for multi-chain partners
by msellers » Fri, 2010-12-10 05:35
6
4,902 by msellers
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21
6
4,020 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
5,204 by rmoretti
Fri, 2016-04-29 09:48
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
5,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
3,369 by gerdos
Tue, 2017-04-18 10:15
Normal topic ∆G calculation script for protein and mutation of AA at each residue
by ara » Tue, 2011-10-25 13:57
6
5,903 by ara
Mon, 2014-04-21 06:47
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12
6
8,578 by msellers
Mon, 2014-04-21 06:47
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
3,863 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Fix corrupted Backbone
by ac.research » Mon, 2018-03-05 12:48
7
3,165 by ac.research
Tue, 2018-03-13 21:36
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
4,237 by Sergey
Mon, 2014-04-21 06:47
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
3,549 by jshen2
Sat, 2017-05-13 08:14
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
9,416 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24
7
6,549 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44
7
4,938 by Sazhnyev
Tue, 2018-03-13 15:55
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
6,144 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
4,271 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Error while converting mol2 to params using molfile_to_params.py
by ahmadkhalifa » Thu, 2018-06-14 10:30
7
3,554 by rmoretti
Thu, 2018-06-28 12:04
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
5,138 by smlewis
Sat, 2017-06-10 15:15
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
4,117 by smlewis
Wed, 2016-08-24 14:23
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
6,681 by rmoretti
Mon, 2014-04-21 06:48
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
8,453 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic Executing the mc simulation of polyalanine fragment
by bharat_46010 » Mon, 2011-01-17 19:18
8
5,609 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
5,313 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic Concatenate Pose
by jadolfbr » Sat, 2011-02-19 21:12
8
6,387 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
7,579 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
5,397 by seanle24245
Sun, 2016-06-19 18:30
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
5,031 by xfliu
Mon, 2014-04-21 06:47
Normal topic The Beta version of PyRosetta 2.0 is ready for download!
by Sergey » Mon, 2011-01-24 10:12
9
5,556 by drluca77
Mon, 2014-04-21 06:47
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
5,669 by ac.research
Wed, 2017-07-05 16:59
Normal topic Fragment Picking in PyRosetta
by ac.research » Thu, 2017-08-31 04:48
9
5,698 by rmoretti
Tue, 2017-10-10 09:16
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
4,530 by ac.research
Fri, 2017-07-14 12:55
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
5,325 by dsim
Tue, 2016-11-22 08:11
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
5,940 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
10,844 by rmoretti
Thu, 2016-02-18 14:22
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06
10
7,327 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
3,703 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic adding coordinate constraints
by jtmacd » Tue, 2011-04-12 04:51
11
8,146 by jtmacd
Mon, 2014-04-21 06:47
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
9,577 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34
12
7,721 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how can we calculate Rosetta score on some decoy set?
by mirzaie » Wed, 2013-06-19 08:43
13
10,083 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic An issue with GenericMonteCarloMover()
by ac.research » Wed, 2018-03-07 13:57
13
4,891 by ac.research
Fri, 2018-05-11 10:59
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59
14
9,009 by Sergey
Mon, 2014-04-21 06:47
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03
15
12,010 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
14,809 by ajasja
Mon, 2014-09-22 10:17
Hot topic SequenceRelax on a loop
by jtmacd » Mon, 2011-04-11 07:53
15
8,880 by ñ
Mon, 2014-04-21 06:47
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
11,181 by msellers
Mon, 2014-04-21 06:47
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
29,119 by msun
Fri, 2015-07-10 11:03
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45
24
22,390 by rmoretti
Mon, 2014-04-21 06:48
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
19,388 by jadolfbr
Mon, 2014-04-21 06:47
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