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Topic / Topic starter | Replies | Views | Last post | |
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[Solved] Docking in metalloprotease (Zinc problem) by zgcarvalho » Wed, 2010-01-20 16:04 |
3 |
5,130 |
by reve_etrange Mon, 2014-04-21 06:47 |
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PyMOL Update by ac.research » Tue, 2018-04-10 22:07 |
6 |
5,135 |
by Sergey Tue, 2018-05-15 11:20 |
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pose_from_sequence with modified residue by nawsad » Wed, 2014-06-25 02:59 |
4 |
5,186 |
by nawsad Sun, 2014-07-13 00:49 |
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Strange fold tree problem with classic and fast relax by jadolfbr » Mon, 2011-03-21 11:58 |
4 |
5,236 |
by jadolfbr Mon, 2014-04-21 06:47 |
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change dihedral angles of any residue by bharat_46010 » Fri, 2013-11-15 00:30 |
3 |
5,284 |
by bharat_46010 Mon, 2014-04-21 06:48 |
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New Python 3.7 by ac.research » Wed, 2018-08-15 07:00 |
5 |
5,305 |
by MNP1986 Mon, 2018-12-03 04:02 |
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How do you combine two .pdb protein structure files of the same protein? by nasim.soltani58 » Sun, 2020-11-22 23:14 |
4 |
5,392 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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BackrubMover options by AOK » Thu, 2012-05-24 05:06 |
5 |
5,447 |
by AOK Mon, 2014-04-21 06:47 |
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How to determine interface residues by rbehan » Wed, 2015-10-14 11:25 |
2 |
5,450 |
by rmoretti Fri, 2016-06-17 09:25 |
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Missing residue coordinates in PDB files by lanselibai » Thu, 2014-09-04 07:34 |
1 |
5,480 |
by rmoretti Thu, 2014-09-04 11:36 |
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Dock antibody at the epitope of antigen by styang » Fri, 2012-06-22 05:44 |
3 |
5,484 |
by smlewis Mon, 2014-04-21 06:47 |
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DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply() by msellers » Wed, 2012-02-22 22:46 |
4 |
5,504 |
by rmoretti Thu, 2019-05-09 15:03 |
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How does Rosetta select atom pairs for Lennard Jones Potential calculations? by bowang2013 » Thu, 2015-10-29 08:04 |
4 |
5,516 |
by smlewis Tue, 2015-11-03 09:17 |
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dG(partner) and ddG(bind) by levinthal » Sat, 2010-08-21 17:04 |
2 |
5,558 |
by smlewis Mon, 2014-04-21 06:47 |
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option removal/KIC by jadolfbr » Thu, 2012-02-02 16:35 |
6 |
5,760 |
by jadolfbr Mon, 2014-04-21 06:47 |
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De novo loop modeling using pyrosetta by bharat_46010 » Sun, 2011-01-16 17:38 |
4 |
5,766 |
by Sergey Mon, 2014-04-21 06:47 |
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Create PDB for heterodimer by pachecoj » Mon, 2013-08-05 19:11 |
1 |
5,785 |
by rmoretti Mon, 2014-04-21 06:48 |
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Reducing PyRosetta memory usage by ajasja » Fri, 2014-10-03 01:51 |
4 |
5,821 |
by Sergey Fri, 2015-04-10 11:25 |
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Approximating CHARMM energy by the rosetta scoring function by ajasja » Fri, 2014-06-20 02:16 |
4 |
5,836 |
by ajasja Thu, 2014-07-03 05:53 |
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About missing disulfide partners for residue... by Mon » Wed, 2014-12-17 05:37 |
3 |
5,843 |
by jadolfbr Thu, 2014-12-18 09:37 |
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Creating rotamers, computing pairwise and total energies by gerdos » Wed, 2017-04-12 02:57 |
6 |
5,849 |
by gerdos Tue, 2017-04-18 10:15 |
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How to optimize the orientations of polar hydrogens in PyRosetta by xfliu » Sat, 2012-04-28 16:33 |
5 |
5,867 |
by xfliu Mon, 2014-04-21 06:47 |
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How to use SAXS energy score in PyRosetta by Jie Hou » Mon, 2016-09-05 08:31 |
5 |
5,895 |
by rmoretti Mon, 2016-11-14 13:21 |
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Decoy Clustering by jadolfbr » Mon, 2010-02-01 22:50 |
5 |
5,903 |
by nawsad Mon, 2014-04-21 06:47 |
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interaction energies between atoms by Stefan » Thu, 2011-04-14 06:15 |
3 |
5,930 |
by smlewis Mon, 2014-04-21 06:47 |
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Output different favored solutions with PackRotamersMover design by xfliu » Fri, 2012-07-13 06:23 |
5 |
6,011 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy scores of D-amino acids by jshen2 » Mon, 2017-05-08 10:15 |
7 |
6,040 |
by jshen2 Sat, 2017-05-13 08:14 |
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Unpredictible amino acid replacements by Victor » Wed, 2012-05-09 09:21 |
6 |
6,046 |
by aloctavodia Mon, 2014-04-21 06:47 |
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Error in loop modeling protocol by jai_INMAS » Fri, 2013-10-18 07:08 |
5 |
6,059 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..." by msellers » Wed, 2012-04-04 12:27 |
5 |
6,067 |
by smlewis Mon, 2014-04-21 06:47 |
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Fix corrupted Backbone by ac.research » Mon, 2018-03-05 12:48 |
7 |
6,136 |
by ac.research Tue, 2018-03-13 21:36 |
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(1) Score pose, (2) move atom, (3) score pose by msellers » Fri, 2011-07-15 11:04 |
6 |
6,140 |
by msellers Mon, 2014-04-21 06:47 |
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Error getting MinMover attributes by assaff » Sun, 2012-03-25 10:54 |
6 |
6,147 |
by smlewis Mon, 2014-04-21 06:47 |
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Which score4? by oppopomoz » Tue, 2013-03-12 06:21 |
4 |
6,238 |
by smlewis Mon, 2014-04-21 06:47 |
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Backbone didn't change in docking, why? by SunH » Wed, 2010-06-02 10:07 |
6 |
6,311 |
by SunH Mon, 2014-04-21 06:47 |
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Score of the protein without ligand by eberhardt » Thu, 2013-03-21 07:29 |
5 |
6,312 |
by eberhardt Mon, 2014-04-21 06:47 |
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Help with pyRosetta python scripting for protein manipulation by pepfolder » Thu, 2012-05-31 14:01 |
5 |
6,396 |
by pepfolder Mon, 2014-04-21 06:47 |
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Customize Rosetta codes and make it accessible to PyRosetta by xfliu » Thu, 2012-05-24 06:27 |
7 |
6,447 |
by Sergey Mon, 2014-04-21 06:47 |
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Creating FeatureReporters in PyRosetta by LiorZ » Tue, 2016-08-23 23:50 |
7 |
6,454 |
by smlewis Wed, 2016-08-24 14:23 |
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Initializing DockDesignParser in PyRosetta by LiorZ » Mon, 2013-04-22 01:56 |
6 |
6,487 |
by LiorZ Mon, 2014-04-21 06:47 |
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Rosetta score vs Experiment by thorx020 » Tue, 2012-09-04 12:38 |
3 |
6,658 |
by smlewis Mon, 2014-04-21 06:47 |
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I don't know what's the problem when load the fragment file by john8611 » Mon, 2014-09-29 03:45 |
5 |
6,663 |
by rmoretti Tue, 2014-09-30 13:16 |
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Calculate residue-residue pairwise energies by pachecoj » Tue, 2013-07-23 04:51 |
4 |
6,694 |
by Sergey Mon, 2014-04-21 06:48 |
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Muting output in pyrosetta by SenyorDrew » Mon, 2017-08-14 08:13 |
6 |
6,845 |
by SenyorDrew Tue, 2017-08-15 07:41 |
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Fold tree not correct for multi-chain partners by msellers » Fri, 2010-12-10 05:35 |
6 |
6,993 |
by msellers Mon, 2014-04-21 06:47 |
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Protein docking with PyRosetta Error! by Apiwat » Sat, 2014-01-11 23:32 |
4 |
6,995 |
by shivarawat115 Mon, 2022-04-11 16:03 |
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Add new atom by eberhardt » Thu, 2013-03-14 02:01 |
4 |
7,072 |
by eberhardt Mon, 2014-04-21 06:47 |
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Argument error when running D120_Ligand_interface.py by piladam » Wed, 2014-07-09 10:43 |
5 |
7,159 |
by rmoretti Mon, 2014-07-21 11:15 |
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Residue.set_chi() does not update internal state? by ajasja » Wed, 2014-09-24 09:19 |
5 |
7,169 |
by rmoretti Mon, 2014-10-06 14:37 |
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Pypy not working, python works... by MarkW » Thu, 2015-03-05 05:15 |
4 |
7,239 |
by MarkW Mon, 2015-08-24 04:43 |
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Question about gradient of energy function by kyler » Tue, 2017-08-22 14:09 |
7 |
7,250 |
by rmoretti Tue, 2017-09-05 10:05 |
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Error while converting mol2 to params using molfile_to_params.py by ahmadkhalifa » Thu, 2018-06-14 10:30 |
7 |
7,270 |
by rmoretti Thu, 2018-06-28 12:04 |
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PyRosetta 2.0 Beta Strand Build by Qulprit » Tue, 2011-02-08 11:30 |
1 |
7,272 |
by weitzner Mon, 2014-04-21 06:47 |
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Large Memory usage in Windows r10 Build by ajasja » Fri, 2014-08-22 09:09 |
4 |
7,333 |
by ajasja Mon, 2014-09-22 09:51 |
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Score Function with Constraints by ac.research » Fri, 2017-07-28 06:41 |
6 |
7,484 |
by ac.research Sat, 2017-12-09 02:15 |
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Error when importing protocols.simple_filters by xfliu » Tue, 2012-10-16 13:37 |
8 |
7,495 |
by xfliu Mon, 2014-04-21 06:47 |
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Fragment Quality by ac.research » Mon, 2017-07-10 10:23 |
9 |
7,495 |
by ac.research Fri, 2017-07-14 12:55 |
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mutate_residue doesn't mutate by dsim » Wed, 2015-03-18 02:32 |
6 |
7,563 |
by rmoretti Fri, 2016-04-29 09:48 |
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PyRosetta surface docking not working by cgautier » Mon, 2015-03-16 05:45 |
6 |
8,056 |
by Sergey Wed, 2015-03-18 11:22 |
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Pyrosetta energy function by somayyehzangooei » Mon, 2011-05-09 08:20 |
6 |
8,109 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up external C++ folding server by seanle24245 » Sat, 2016-06-11 10:54 |
8 |
8,173 |
by seanle24245 Sun, 2016-06-19 18:30 |
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Executing the mc simulation of polyalanine fragment by bharat_46010 » Mon, 2011-01-17 19:18 |
8 |
8,226 |
by smlewis Mon, 2014-04-21 06:47 |
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Relaxing experimental structure by aloctavodia » Thu, 2016-09-29 03:46 |
8 |
8,311 |
by aloctavodia Thu, 2016-10-06 03:29 |
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∆G calculation script for protein and mutation of AA at each residue by ara » Tue, 2011-10-25 13:57 |
6 |
8,312 |
by ara Mon, 2014-04-21 06:47 |
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The Beta version of PyRosetta 2.0 is ready for download! by Sergey » Mon, 2011-01-24 10:12 |
9 |
8,443 |
by drluca77 Mon, 2014-04-21 06:47 |
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How to combine two chains by seanle24245 » Tue, 2016-07-19 07:54 |
5 |
8,574 |
by seanle24245 Fri, 2016-07-22 06:53 |
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Symmetric design with PyRosetta by dsim » Thu, 2016-11-17 07:50 |
9 |
8,627 |
by dsim Tue, 2016-11-22 08:11 |
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mutate_residue not working by lanselibai » Mon, 2014-08-11 03:55 |
7 |
8,637 |
by lanselibai Sun, 2014-08-17 07:30 |
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problems with low-resolution loop refinemet (LoopMover_Perturb_CCD) by aloctavodia » Thu, 2012-07-26 06:51 |
9 |
8,649 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Fold Tutorial by ac.research » Sat, 2017-06-03 19:39 |
7 |
8,677 |
by smlewis Sat, 2017-06-10 15:15 |
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newbie question re pose syntax by Amy F » Mon, 2019-04-15 12:50 |
10 |
8,735 |
by jadolfbr Wed, 2019-04-24 10:12 |
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How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types by AyushGoyal » Wed, 2014-01-22 16:24 |
7 |
9,018 |
by rmoretti Mon, 2014-04-21 06:48 |
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Segmentation fault when reading VMD PDB by msellers » Mon, 2011-01-03 07:14 |
6 |
9,156 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotamer information from pose by AyushGoyal » Wed, 2014-01-15 14:37 |
7 |
9,200 |
by rmoretti Mon, 2014-04-21 06:48 |
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Concatenate Pose by jadolfbr » Sat, 2011-02-19 21:12 |
8 |
9,219 |
by smlewis Mon, 2014-04-21 06:47 |
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An issue with GenericMonteCarloMover() by ac.research » Wed, 2018-03-07 13:57 |
13 |
9,345 |
by ac.research Fri, 2018-05-11 10:59 |
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Fragment Picking in PyRosetta by ac.research » Thu, 2017-08-31 04:48 |
9 |
10,015 |
by rmoretti Tue, 2017-10-10 09:16 |
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PyRosetta FastDesign by ac.research » Tue, 2017-07-04 10:23 |
9 |
10,248 |
by ac.research Wed, 2017-07-05 16:59 |
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Alignment and RMSD by ñ » Wed, 2013-11-27 12:43 |
5 |
10,550 |
by rmoretti Mon, 2014-04-21 06:48 |
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Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer? by lah435 » Mon, 2012-09-10 16:06 |
10 |
10,577 |
by ggyimesi Mon, 2014-04-21 06:47 |
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Rotamer Libraries in Pyrosetta by protos_heis » Fri, 2013-01-18 12:02 |
8 |
10,672 |
by jadolfbr Mon, 2014-04-21 06:47 |
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backrub mover by sunlufinal » Sat, 2012-11-24 04:46 |
8 |
11,364 |
by jadolfbr Tue, 2015-08-18 00:53 |
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Parallel processing? by mark.wilson » Mon, 2010-07-26 15:12 |
6 |
11,660 |
by msellers Mon, 2014-04-21 06:47 |
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how to read a silent file ? by Anonymous » Wed, 2012-06-27 09:34 |
12 |
11,797 |
by Anonymous Mon, 2014-04-21 06:47 |
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adding coordinate constraints by jtmacd » Tue, 2011-04-12 04:51 |
11 |
12,016 |
by jtmacd Mon, 2014-04-21 06:47 |
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PyRosetta AbInitio Folding protocol by batch2k » Tue, 2009-12-15 11:09 |
7 |
12,210 |
by jadolfbr Thu, 2015-02-05 10:32 |
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Minimization question by rfschleif » Wed, 2011-05-25 06:59 |
14 |
13,214 |
by Sergey Mon, 2014-04-21 06:47 |
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non canonical aa mutations/force fields/pyrosetta by Anouk » Wed, 2013-06-19 01:51 |
12 |
13,348 |
by jadolfbr Mon, 2014-04-21 06:48 |
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SequenceRelax on a loop by jtmacd » Mon, 2011-04-11 07:53 |
15 |
13,538 |
by ñ Mon, 2014-04-21 06:47 |
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ΔΔG Calculation of a Mutation with PyRosetta by akaashvenkat » Fri, 2018-03-09 01:44 |
13 |
13,618 |
by matteoferla Wed, 2022-01-12 01:20 |
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how can we calculate Rosetta score on some decoy set? by mirzaie » Wed, 2013-06-19 08:43 |
13 |
14,151 |
by jadolfbr Mon, 2014-04-21 06:48 |
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cartesian space minimization by bystrc » Fri, 2014-03-28 14:17 |
10 |
14,910 |
by rmoretti Thu, 2016-02-18 14:22 |
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HBondEnergy by bharat_46010 » Wed, 2013-05-15 19:03 |
15 |
17,225 |
by rmoretti Mon, 2014-04-21 06:47 |
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Creating a vector1 of AtomID objects by msellers » Mon, 2011-07-18 06:24 |
19 |
17,254 |
by msellers Mon, 2014-04-21 06:47 |
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Making mutations in PyRosetta? by thorx020 » Thu, 2012-08-09 09:24 |
15 |
21,180 |
by ajasja Mon, 2014-09-22 10:17 |
|
undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0) by embl-structures » Thu, 2010-08-05 05:02 |
1 |
21,409 |
by embl-structures Mon, 2014-04-21 06:47 |
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Monte Carlo usage? by atruong » Tue, 2012-08-28 13:24 |
29 |
28,059 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Energy Minimization by bharat_46010 » Wed, 2013-07-31 20:45 |
24 |
30,970 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Score Function weights by thorx020 » Sun, 2012-08-12 13:59 |
24 |
37,955 |
by msun Fri, 2015-07-10 11:03 |
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