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PyRosetta - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic [Solved] Docking in metalloprotease (Zinc problem)
by zgcarvalho » Wed, 2010-01-20 16:04
3
5,130 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
5,135 by Sergey
Tue, 2018-05-15 11:20
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
5,186 by nawsad
Sun, 2014-07-13 00:49
Normal topic Strange fold tree problem with classic and fast relax
by jadolfbr » Mon, 2011-03-21 11:58
4
5,236 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
5,284 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
5,305 by MNP1986
Mon, 2018-12-03 04:02
Normal topic How do you combine two .pdb protein structure files of the same protein?
by nasim.soltani58 » Sun, 2020-11-22 23:14
4
5,392 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
5,447 by AOK
Mon, 2014-04-21 06:47
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
5,450 by rmoretti
Fri, 2016-06-17 09:25
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
5,480 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
5,484 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
5,504 by rmoretti
Thu, 2019-05-09 15:03
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
5,516 by smlewis
Tue, 2015-11-03 09:17
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
5,558 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
5,760 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic De novo loop modeling using pyrosetta
by bharat_46010 » Sun, 2011-01-16 17:38
4
5,766 by Sergey
Mon, 2014-04-21 06:47
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
5,785 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
5,821 by Sergey
Fri, 2015-04-10 11:25
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
5,836 by ajasja
Thu, 2014-07-03 05:53
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
5,843 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
5,849 by gerdos
Tue, 2017-04-18 10:15
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
5,867 by xfliu
Mon, 2014-04-21 06:47
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
5,895 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Decoy Clustering
by jadolfbr » Mon, 2010-02-01 22:50
5
5,903 by nawsad
Mon, 2014-04-21 06:47
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15
3
5,930 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
6,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
6,040 by jshen2
Sat, 2017-05-13 08:14
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21
6
6,046 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08
5
6,059 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
6,067 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fix corrupted Backbone
by ac.research » Mon, 2018-03-05 12:48
7
6,136 by ac.research
Tue, 2018-03-13 21:36
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
6,140 by msellers
Mon, 2014-04-21 06:47
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
6,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21
4
6,238 by smlewis
Mon, 2014-04-21 06:47
Normal topic Backbone didn't change in docking, why?
by SunH » Wed, 2010-06-02 10:07
6
6,311 by SunH
Mon, 2014-04-21 06:47
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29
5
6,312 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
6,396 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
6,447 by Sergey
Mon, 2014-04-21 06:47
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
6,454 by smlewis
Wed, 2016-08-24 14:23
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
6,487 by LiorZ
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
6,658 by smlewis
Mon, 2014-04-21 06:47
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
6,663 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
6,694 by Sergey
Mon, 2014-04-21 06:48
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
6,845 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Fold tree not correct for multi-chain partners
by msellers » Fri, 2010-12-10 05:35
6
6,993 by msellers
Mon, 2014-04-21 06:47
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
4
6,995 by shivarawat115
Mon, 2022-04-11 16:03
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
7,072 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
7,159 by rmoretti
Mon, 2014-07-21 11:15
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
7,169 by rmoretti
Mon, 2014-10-06 14:37
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
7,239 by MarkW
Mon, 2015-08-24 04:43
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
7,250 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Error while converting mol2 to params using molfile_to_params.py
by ahmadkhalifa » Thu, 2018-06-14 10:30
7
7,270 by rmoretti
Thu, 2018-06-28 12:04
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
7,272 by weitzner
Mon, 2014-04-21 06:47
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
7,333 by ajasja
Mon, 2014-09-22 09:51
Normal topic Score Function with Constraints
by ac.research » Fri, 2017-07-28 06:41
6
7,484 by ac.research
Sat, 2017-12-09 02:15
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
7,495 by xfliu
Mon, 2014-04-21 06:47
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
7,495 by ac.research
Fri, 2017-07-14 12:55
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
7,563 by rmoretti
Fri, 2016-04-29 09:48
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
8,056 by Sergey
Wed, 2015-03-18 11:22
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
8,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
8,173 by seanle24245
Sun, 2016-06-19 18:30
Normal topic Executing the mc simulation of polyalanine fragment
by bharat_46010 » Mon, 2011-01-17 19:18
8
8,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
8,311 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic ∆G calculation script for protein and mutation of AA at each residue
by ara » Tue, 2011-10-25 13:57
6
8,312 by ara
Mon, 2014-04-21 06:47
Normal topic The Beta version of PyRosetta 2.0 is ready for download!
by Sergey » Mon, 2011-01-24 10:12
9
8,443 by drluca77
Mon, 2014-04-21 06:47
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
8,574 by seanle24245
Fri, 2016-07-22 06:53
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
8,627 by dsim
Tue, 2016-11-22 08:11
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
8,637 by lanselibai
Sun, 2014-08-17 07:30
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
8,649 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
8,677 by smlewis
Sat, 2017-06-10 15:15
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
8,735 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24
7
9,018 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Segmentation fault when reading VMD PDB
by msellers » Mon, 2011-01-03 07:14
6
9,156 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
9,200 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Concatenate Pose
by jadolfbr » Sat, 2011-02-19 21:12
8
9,219 by smlewis
Mon, 2014-04-21 06:47
Normal topic An issue with GenericMonteCarloMover()
by ac.research » Wed, 2018-03-07 13:57
13
9,345 by ac.research
Fri, 2018-05-11 10:59
Normal topic Fragment Picking in PyRosetta
by ac.research » Thu, 2017-08-31 04:48
9
10,015 by rmoretti
Tue, 2017-10-10 09:16
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
10,248 by ac.research
Wed, 2017-07-05 16:59
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
10,550 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06
10
10,577 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
10,672 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
11,364 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12
6
11,660 by msellers
Mon, 2014-04-21 06:47
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34
12
11,797 by Anonymous
Mon, 2014-04-21 06:47
Normal topic adding coordinate constraints
by jtmacd » Tue, 2011-04-12 04:51
11
12,016 by jtmacd
Mon, 2014-04-21 06:47
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
12,210 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59
14
13,214 by Sergey
Mon, 2014-04-21 06:47
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
13,348 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic SequenceRelax on a loop
by jtmacd » Mon, 2011-04-11 07:53
15
13,538 by ñ
Mon, 2014-04-21 06:47
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44
13
13,618 by matteoferla
Wed, 2022-01-12 01:20
Normal topic how can we calculate Rosetta score on some decoy set?
by mirzaie » Wed, 2013-06-19 08:43
13
14,151 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
14,910 by rmoretti
Thu, 2016-02-18 14:22
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03
15
17,225 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
17,254 by msellers
Mon, 2014-04-21 06:47
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
21,180 by ajasja
Mon, 2014-09-22 10:17
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02
1
21,409 by embl-structures
Mon, 2014-04-21 06:47
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
28,059 by jadolfbr
Mon, 2014-04-21 06:47
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45
24
30,970 by rmoretti
Mon, 2014-04-21 06:48
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
37,955 by msun
Fri, 2015-07-10 11:03
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