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Output several poses in a silent file by SenyorDrew » Tue, 2018-03-20 07:12 |
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2,260 |
by Martin Floor Tue, 2018-12-11 05:43 |
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[Solved] Docking to a trimer by batch2k » Wed, 2010-02-17 02:18 |
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2,251 |
by batch2k Mon, 2014-04-21 06:47 |
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segfault in loop by reve_etrange » Sat, 2010-02-13 21:49 |
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2,251 |
by reve_etrange Mon, 2014-04-21 06:47 |
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ClassicRelax with ligand by S » Mon, 2010-09-27 07:55 |
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2,246 |
by smlewis Mon, 2014-04-21 06:47 |
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Pose is full atom and mover expects centroid, how do I handle it the best? by hlinn » Thu, 2022-01-27 05:55 |
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2,246 |
by hlinn Tue, 2022-02-08 07:23 |
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Convert Rotamer Vector to Chi Angles by L-Allanine » Sat, 2016-07-30 09:16 |
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2,236 |
by rmoretti Mon, 2016-09-05 10:35 |
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How to call SnugDock from PyRosetta by SenyorDrew » Tue, 2016-06-21 07:28 |
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2,220 |
by jeliazkov Fri, 2016-07-01 08:42 |
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task_pack.restrict_to_repacking() not working by lanselibai » Mon, 2014-08-11 08:06 |
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2,213 |
by rmoretti Tue, 2014-08-12 08:35 |
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Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
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2,210 |
by rmoretti Thu, 2019-05-09 15:56 |
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how to use constrains in PyRosetta? by ast » Mon, 2011-09-05 07:22 |
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2,179 |
by ast Mon, 2014-04-21 06:47 |
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dump_pdb problems by srballard » Fri, 2010-05-28 14:04 |
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2,166 |
by srballard Mon, 2014-04-21 06:47 |
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Scoring with CCP4 electron density maps constraints by xfliu » Thu, 2012-05-03 03:30 |
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2,161 |
by xfliu Mon, 2014-04-21 06:47 |
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How does min_mover work? by anidude » Fri, 2022-03-04 07:30 |
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2,149 |
by matteoferla Sun, 2022-03-20 02:53 |
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RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
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2,139 |
by rmoretti Sat, 2018-06-30 02:38 |
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GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
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2,124 |
by rmoretti Sat, 2018-06-30 02:37 |
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Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
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2,121 |
by matteoferla Wed, 2021-04-07 06:50 |
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Glycan minimization by seanle24245 » Thu, 2016-10-06 13:51 |
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2,115 |
by Labonte Thu, 2016-10-06 14:05 |
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restricted fast relax changes whole structure? by patcD » Wed, 2021-08-25 02:05 |
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2,073 |
by patcD Wed, 2021-09-01 03:30 |
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Libmini crashes after protocol run by whooper » Tue, 2017-01-31 09:48 |
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2,070 |
by Sergey Tue, 2017-01-31 13:42 |
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Folding Video by ac.research » Sat, 2018-05-12 09:19 |
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2,049 |
by rmoretti Sat, 2018-06-30 02:38 |
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London by MarkW » Sun, 2015-02-08 14:14 |
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2,048 |
by MarkW Sun, 2015-02-08 14:14 |
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pose_from_rcsb error by criss.hartzell » Wed, 2020-04-22 15:12 |
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2,047 |
by matteoferla Thu, 2020-04-30 12:04 |
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"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
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2,044 |
by walcob Mon, 2018-01-29 11:22 |
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Need help figuring out the meaning and cause of an error by AleksanderK » Fri, 2019-05-03 11:02 |
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2,018 |
by rmoretti Thu, 2019-05-09 14:32 |
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Pyrosetta protocol to move protein-peptide docked complex closer to active site. by eduardoftoliveira » Fri, 2018-06-29 02:50 |
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2,013 |
by eduardoftoliveira Fri, 2018-06-29 03:46 |
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Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
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2,005 |
by ralford Wed, 2018-12-19 03:20 |
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Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
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1,987 |
by rmoretti Fri, 2017-12-01 10:34 |
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Updating Coords by jadolfbr » Sat, 2010-01-30 10:33 |
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1,965 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Questions of Cartesian_ddG calculation in PyRosetta by CKS2001 » Fri, 2022-01-07 01:36 |
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1,949 |
by CKS2001 Sat, 2022-01-08 02:14 |
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PyRosetta on a HPC by ac.research » Thu, 2019-03-14 02:00 |
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1,934 |
by rmoretti Wed, 2019-07-10 10:17 |
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Problems with building bindings. by AndrewBworth » Thu, 2010-02-04 17:26 |
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1,908 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
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1,908 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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1,900 |
by vmulligan Mon, 2021-03-29 10:39 |
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Assesing the docking by nasim.soltani58 » Sat, 2020-12-05 21:19 |
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1,891 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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Adding Custom AtomTypes to Pyrosetta by garrettameek » Wed, 2019-03-13 15:06 |
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1,889 |
by rmoretti Thu, 2019-05-09 15:06 |
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Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
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1,886 |
by matteoferla Tue, 2021-01-05 04:05 |
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small molecule docking by sharang » Mon, 2010-08-02 14:57 |
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1,881 |
by sharang Mon, 2014-04-21 06:47 |
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Minimization not changing jump edge vector length by bio_james » Tue, 2017-12-12 09:32 |
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1,865 |
by rmoretti Sat, 2017-12-16 10:47 |
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Non-standard amino acids by mark.wilson » Mon, 2010-08-02 12:13 |
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1,853 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Distance constraints for amino acids pairs by blubbi » Tue, 2010-05-18 05:39 |
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1,850 |
by blubbi Mon, 2014-04-21 06:47 |
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Architecture question by jwillis » Thu, 2010-02-25 09:43 |
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1,850 |
by jwillis Mon, 2014-04-21 06:47 |
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Windows version of PyRosetta 2.0 is ready for download! by Sergey » Fri, 2011-02-11 15:58 |
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1,849 |
by Sergey Mon, 2014-04-21 06:47 |
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FastRelax results in bad structure by Eden » Mon, 2021-04-26 08:39 |
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1,840 |
by Eden Wed, 2021-06-23 01:13 |
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residue selection / secondary structure constraints by sharang » Thu, 2010-08-05 10:16 |
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1,822 |
by sharang Mon, 2014-04-21 06:47 |
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Determine residues where Backrub Mover is applied by jferrie » Fri, 2017-10-27 08:19 |
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1,807 |
by rmoretti Fri, 2017-12-01 10:25 |
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analysis utilities for trajectories by cbala » Mon, 2010-06-14 02:58 |
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1,793 |
by cbala Mon, 2014-04-21 06:47 |
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Can we have email alert for the reply? by lanselibai » Wed, 2014-08-13 13:24 |
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1,793 |
by lanselibai Wed, 2014-08-13 13:24 |
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PyRosetta version 2.011 for Mac/Linux is ready to download! by Sergey » Mon, 2011-11-21 08:51 |
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1,761 |
by Sergey Mon, 2014-04-21 06:47 |
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Passing a dictionary from pyrosetta to rosetta by SenyorDrew » Mon, 2017-11-13 11:33 |
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1,748 |
by rmoretti Fri, 2017-12-01 10:10 |
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Gunn fragment insertion by jadolfbr » Sun, 2010-02-28 09:39 |
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1,737 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Less silly way to get number of iterations of Relax by matteoferla » Tue, 2021-07-20 07:00 |
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1,734 |
by matteoferla Tue, 2021-07-20 13:44 |
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Score bonus to hbond by yijietseng » Fri, 2019-07-05 12:28 |
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1,730 |
by rmoretti Tue, 2019-07-09 09:42 |
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How to tell where and what fragment or rotamer was inserted? by charlie.strauss » Wed, 2010-01-27 10:36 |
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1,729 |
by charlie.strauss Mon, 2014-04-21 06:47 |
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building a 77 amino acid long fragment by tevang » Fri, 2010-02-19 06:37 |
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1,712 |
by tevang Mon, 2014-04-21 06:47 |
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How do I insert or delete residues into specific locations? by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 |
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1,702 |
by matteoferla Tue, 2021-01-05 03:53 |
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Question Regarding Usage of Specific Rosetta Tools in PyRosetta by jurkm » Thu, 2010-07-22 23:54 |
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1,693 |
by jurkm Mon, 2014-04-21 06:47 |
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Announcements by sid » Fri, 2009-10-02 08:54 |
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1,691 |
by sid Mon, 2014-04-21 06:47 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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1,691 |
by matteoferla Tue, 2021-03-30 08:20 |
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Applying RMSD constraints using pyrosetta or Rosettascripts by chenna » Thu, 2023-02-09 05:37 |
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1,684 |
by chenna Fri, 2023-02-10 05:37 |
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"Server Could Not Be Reached" although I have an Internet connection by epi89 » Mon, 2020-09-28 21:32 |
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1,681 |
by smlewis Tue, 2020-09-29 12:00 |
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DockingSlideIntoContact does not work by batch2k » Wed, 2010-02-17 05:57 |
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1,680 |
by batch2k Mon, 2014-04-21 06:47 |
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How to relax glycans after glycosylating sites on a pose? by sdtruong » Mon, 2021-03-22 09:44 |
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1,665 |
by sdtruong Mon, 2021-03-22 17:05 |
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Suggestion: setting Sphinx documentation to not skip __init__ by matteoferla » Mon, 2020-08-24 09:02 |
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1,634 |
by matteoferla Mon, 2020-08-24 09:02 |
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PyRosetta v1.1 by jadolfbr » Tue, 2010-02-09 08:02 |
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1,620 |
by jadolfbr Mon, 2014-04-21 06:47 |
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New files for loop modeling by Victor » Fri, 2012-02-03 14:36 |
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1,619 |
by Victor Mon, 2014-04-21 06:47 |
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pyrosetta die slow by Eden » Sun, 2021-06-13 00:05 |
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1,617 |
by Eden Mon, 2021-06-14 23:10 |
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How can I automate mutations with PyRosetta or other Rosetta software? by archaeopteryx » Mon, 2023-07-03 19:35 |
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1,596 |
by arjan-hada Sat, 2024-01-27 05:48 |
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PyRosetta 1.1 for Windows? by sylvia » Tue, 2010-02-09 16:06 |
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1,580 |
by sylvia Mon, 2014-04-21 06:47 |
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Interface Analyzer with Glycans by drewaight » Tue, 2020-06-09 20:06 |
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1,556 |
by matteoferla Wed, 2020-07-01 05:30 |
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How does one convert a PDB file of an antibody to AHO scheme? by kylevaccaro » Mon, 2023-02-13 18:14 |
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1,532 |
by kylevaccaro Wed, 2023-02-15 19:18 |
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Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
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1,505 |
by matteoferla Wed, 2021-06-30 09:02 |
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Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
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1,449 |
by João Sartori Wed, 2022-02-09 04:35 |
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trRosetta modelling with a ligand by ShiranBZ » Tue, 2020-08-25 01:44 |
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1,430 |
by ShiranBZ Tue, 2020-08-25 01:44 |
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Challenge with applying AntibodyCDRGrafter method and MinMover method by kylevaccaro » Sat, 2023-02-18 21:41 |
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1,414 |
by nannemdp Sun, 2023-02-19 12:05 |
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cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
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1,414 |
by ac.research Thu, 2018-03-29 07:50 |
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Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
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Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
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1,407 |
by matteoferla Wed, 2020-12-02 13:49 |
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rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working by tschiex » Sun, 2017-11-05 08:29 |
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1,345 |
by tschiex Sun, 2017-11-05 08:29 |
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Pyrosetta score protein structures with missing atoms in sidechain by xuezhi » Fri, 2021-04-09 13:33 |
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1,314 |
by matteoferla Sat, 2021-04-10 07:18 |
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Molfile to params creating invalid params output by edan » Sun, 2021-08-29 01:54 |
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1,283 |
by tsztain Sun, 2021-08-29 11:15 |
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How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
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1,272 |
by sarah_b Thu, 2020-05-14 02:37 |
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PyMOLMover object has no attribute 'link' by nleroy » Mon, 2019-07-22 07:51 |
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1,254 |
by nleroy Mon, 2019-07-22 07:51 |
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Pyrosetta imported after rdkit by matteoferla » Sun, 2020-03-01 02:38 |
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1,241 |
by matteoferla Sun, 2020-03-01 02:38 |
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any examples of calling SnugDock from pyrosetta? by antonkulaga » Thu, 2021-12-23 16:13 |
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1,190 |
by matteoferla Mon, 2022-01-10 07:14 |
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Atom mapping in RMSD functions by gkell » Tue, 2022-02-15 15:48 |
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1,172 |
by rmoretti Fri, 2022-02-18 10:23 |
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Affinity optimization with GreedyOptMutationMover by wentlewi » Thu, 2020-05-07 08:29 |
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1,164 |
by wentlewi Thu, 2020-05-07 12:33 |
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Python3.8 release for Mac download is a dead link by noahC_noahDo » Fri, 2020-06-26 18:20 |
0 |
1,090 |
by noahC_noahDo Fri, 2020-06-26 18:20 |
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Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
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1,084 |
by michelleqyh Fri, 2020-08-21 08:44 |
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Structure not changing after pose.set_phi by publicclass » Thu, 2020-11-05 09:34 |
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1,081 |
by publicclass Thu, 2020-11-05 09:34 |
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WindowsError: [Error 32] by jetu20 » Sun, 2020-10-11 21:02 |
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1,073 |
by jetu20 Sun, 2020-10-11 21:02 |
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Segfault when loading scorefxn() and load_from_pdb() by mm » Wed, 2020-07-22 03:00 |
0 |
1,042 |
by mm Wed, 2020-07-22 03:02 |
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Post-traslational modifications by diegoms » Wed, 2023-06-21 01:22 |
4 |
1,039 |
by diegoms Wed, 2023-08-02 01:18 |
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How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
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948 |
by michelleqyh Tue, 2020-08-04 07:26 |
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Symmetry breaks due to small structure gaps by dbiedermann » Mon, 2021-09-20 17:39 |
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828 |
by dbiedermann Mon, 2021-09-20 17:40 |
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Collect data about the modelling by Roberto » Thu, 2022-01-06 01:43 |
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726 |
by Roberto Thu, 2022-01-06 01:43 |
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Different results FastRelax pyrosetta vs rosetta_scripts by karenjgonzalez » Tue, 2023-06-20 09:52 |
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711 |
by karenjgonzalez Fri, 2023-08-11 10:57 |
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What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)? by lanselibai » Sat, 2023-10-28 09:49 |
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460 |
by rmoretti Mon, 2023-10-30 08:43 |
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Set torsions for atoms in different residues by mluengo » Fri, 2023-05-12 03:07 |
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381 |
by mluengo Fri, 2023-05-12 03:07 |
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Minimizing a Symmetric Structure by ammar.x.gilani » Wed, 2023-08-02 11:10 |
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321 |
by ammar.x.gilani Wed, 2023-08-02 11:10 |
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Rotamers one- and two-body energies by ajfmdm » Thu, 2024-04-04 00:48 |
2 |
101 |
by ajfmdm Mon, 2024-04-08 13:04 |
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