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PyRosetta - Scripts

Topic / Topic starter Replies Views Last postsort ascending
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:21
0
10,121 by admin
Fri, 2015-09-04 16:15
Normal topic How to make .frags files
by krosika1 » Thu, 2021-07-08 18:16
1
60 by zivben
Sun, 2021-08-01 02:44
Normal topic setup_foldtree not maintaining partners
by alkaline_lemon » Fri, 2021-07-30 09:17
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19 by alkaline_lemon
Fri, 2021-07-30 09:17
Normal topic Error running D100_Docking.py
by Rodriguez » Fri, 2021-06-25 11:32
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71 by matteoferla
Tue, 2021-06-29 08:54
Normal topic Argument Error while running Ligand_interface.py
by Karthik » Sat, 2021-03-13 21:54
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202 by Karthik
Sat, 2021-03-13 21:54
Normal topic Is there a side-program enabling us to see the clashes and interactions between ligand and protein?
by egecav » Fri, 2021-02-05 04:42
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193 by egecav
Fri, 2021-02-05 04:42
Normal topic ValueError: can only read V2000 format files
by egecav » Wed, 2021-01-20 13:49
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232 by rmoretti
Wed, 2021-01-20 16:17
Normal topic molfile_to_params.py
by iGemBoulder » Fri, 2019-08-02 12:15
5
1,947 by egecav
Mon, 2021-01-18 05:27
Normal topic read_mdl_sdf function not defined(molfile_to_params.py)
by egecav » Wed, 2021-01-13 22:14
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165 by egecav
Thu, 2021-01-14 21:51
Normal topic symmetric design w/ hbnet and unsatisfied_buried_penalty score terms
by saz » Tue, 2020-12-08 11:37
3
529 by vmulligan
Fri, 2020-12-11 19:05
Normal topic Mutate residue with NCAA
by tttt » Fri, 2020-12-04 14:53
1
391 by vmulligan
Fri, 2020-12-04 15:25
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:28
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407 by michelleqyh
Tue, 2020-08-04 07:28
Normal topic adding greek_alphabets in non-canonical AA parameter generation
by hajar » Wed, 2020-06-03 14:00
2
732 by hajar
Wed, 2020-06-03 15:41
Normal topic problem of renamed atoms in running molfile_to_params.py
by hajar » Wed, 2020-04-22 19:17
1
743 by matteoferla
Mon, 2020-05-04 02:16
Normal topic getting .params file for a ligand composed of protein and lipid
by hajar » Wed, 2020-04-22 19:47
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359 by hajar
Wed, 2020-04-22 19:47
Normal topic dump_scored_pdb
by allan.ferrari » Wed, 2020-02-19 07:21
1
670 by jadolfbr
Wed, 2020-02-19 08:14
Normal topic insert pose into pose
by tttt » Sun, 2020-02-16 10:35
5
1,887 by tttt
Mon, 2020-02-17 08:01
Normal topic Residue Pair Energy
by sujigeorge1979 » Thu, 2020-02-13 03:36
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465 by sujigeorge1979
Thu, 2020-02-13 20:06
Normal topic Incomplete Error message
by tlc55555 » Mon, 2019-07-22 14:47
1
805 by rmoretti
Mon, 2019-11-04 12:47
Normal topic Fragment Insertion to Generate a Loop
by zahra.mazh92 » Tue, 2019-10-08 12:50
0
651 by zahra.mazh92
Tue, 2019-10-08 12:50
Normal topic Pyrosetta: restrict repack (and minimization) to specific region
by kschu » Tue, 2019-07-02 10:52
6
3,060 by kschu
Wed, 2019-07-10 23:36
Normal topic about deNovoProteinMimeticsGen2
by zhangying1990 » Mon, 2019-01-14 17:09
7
3,021 by rmoretti
Mon, 2019-06-24 12:37
Normal topic script recommendations? for high res docking from low res
by Amy F » Wed, 2019-05-01 07:59
3
1,654 by rmoretti
Thu, 2019-05-09 14:05
Normal topic pyrosetta docking script not reading/finding pdb files
by Amy F » Tue, 2019-04-30 09:21
3
1,816 by danpf
Tue, 2019-04-30 12:02
Normal topic D100 Docking script error test.output
by Amy F » Fri, 2019-04-26 08:29
5
2,420 by Amy F
Tue, 2019-04-30 08:39
Normal topic Pyrosetta doesn't recognize the correct docking partners
by hamedkhakzad » Sun, 2018-12-23 11:54
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635 by hamedkhakzad
Sun, 2018-12-23 11:54
Normal topic create heparan sulfate using pyrosetta
by tarsis » Sat, 2018-12-15 23:11
2
1,130 by tarsis
Sun, 2018-12-16 20:21
Normal topic error with extend_terminus.py
by bigjim1309 » Wed, 2018-07-04 00:47
1
1,255 by MNP1986
Tue, 2018-07-31 05:17
Normal topic Error when run script "thread_pdb_from_alignment.py"
by carlos_andre » Fri, 2018-03-09 09:38
4
2,457 by carlos_andre
Tue, 2018-03-13 07:13
Normal topic Help with ddg_monomer in pyrosetta
by covadiuc » Wed, 2018-01-10 08:30
1
1,174 by rmoretti
Tue, 2018-01-30 06:56
Normal topic Total score for individual residue
by ac.research » Tue, 2017-06-06 05:24
1
1,646 by jadolfbr
Tue, 2017-06-06 16:14
Normal topic Symmetrical Docking Example
by johnwo1990 » Wed, 2017-03-08 04:25
2
3,130 by johnwo1990
Thu, 2017-03-09 12:16
Normal topic Changing the Number of Cycles of D110_DNA_interface.py Script
by mrodr26 » Mon, 2016-10-24 11:33
1
1,450 by rmoretti
Mon, 2016-11-14 13:56
Normal topic Docking.py - protocols.docking.DockingInitialPerturbation: moving together failed. Aborting DockingSlideIntoContact.
by pepfolder » Fri, 2012-06-08 13:56
7
7,978 by fradom
Mon, 2016-03-07 06:58
Normal topic Freezing arbitrary backbone dihedral angles...
by Mon » Thu, 2015-09-03 07:45
7
6,160 by Mon
Thu, 2015-09-10 01:46
Normal topic Script for precalculating rotamer energies
by pachecoj » Tue, 2013-08-06 08:59
2
2,815 by MarkW
Mon, 2015-07-27 05:36
Normal topic Efficient local energy computation
by Mon » Mon, 2014-11-17 08:57
10
8,994 by rmoretti
Fri, 2015-01-02 09:24
Normal topic Loop modeling script - unwanted change of amino acid identities
by smith1634 » Fri, 2014-11-21 08:42
5
4,500 by rmoretti
Fri, 2014-12-05 00:47
Normal topic ConstantLengthFragSet(3)..read_fragment_file RuntimeError
by john8611 » Mon, 2014-09-29 07:53
1
2,609 by rmoretti
Mon, 2014-09-29 15:14
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:23
1
2,165 by Labonte
Mon, 2014-09-08 09:07
Normal topic using MonteCarlo to fold a random structure into a helical structure
by Run » Tue, 2013-10-22 05:48
5
6,210 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:19
2
2,984 by chinhsutran
Mon, 2014-04-21 06:48
Normal topic Ultrafast shape recognition
by Run » Tue, 2013-11-19 00:23
1
2,131 by rmoretti
Mon, 2014-04-21 06:48
Normal topic __init__.py - problem with runing the script
by peony » Thu, 2013-10-31 00:35
2
3,075 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Minimization of structure after each trial move in PackRotamersMover
by wymore-ornl » Fri, 2013-08-16 18:58
2
2,787 by wymore-ornl
Mon, 2014-04-21 06:48
Normal topic Multi Ligand docking to a protein
by Vaish86 » Sun, 2013-08-04 10:46
8
10,853 by xpzhang
Mon, 2014-04-21 06:48
Normal topic add water into protein interfaces using solvated rotamer?
by chinhsutran » Sat, 2013-07-20 07:33
5
4,771 by chinhsutran
Mon, 2014-04-21 06:48
Normal topic scorefxn.show(pose) method in python shell and IDLE
by peony » Mon, 2013-07-08 01:34
14
12,853 by peony
Mon, 2014-04-21 06:48
Normal topic Script not working
by jai_INMAS » Wed, 2013-06-12 04:38
8
11,343 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic params_list
by tjn » Tue, 2013-07-09 07:19
3
3,158 by tjn
Mon, 2014-04-21 06:48
Normal topic Different Pose Energy Values before and after Dumping
by oppopomoz » Wed, 2013-02-06 09:35
8
7,258 by oppopomoz
Mon, 2014-04-21 06:47
Normal topic Docking- Binding Energy
by abdul » Thu, 2012-11-15 02:56
10
11,041 by jai_INMAS
Mon, 2014-04-21 06:47
Normal topic docking.py auto-detect partners
by abdul » Sun, 2012-11-04 08:36
10
7,595 by abdul
Mon, 2014-04-21 06:47
Normal topic Protein Structure Prediction using PyRosetta, suggestions wanted :)
by oppopomoz » Tue, 2012-05-15 09:40
1
3,079 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Protein Structure Prediction
by Nuria » Thu, 2012-04-05 12:36
2
3,086 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta Folding.py script
by twopint23oz » Sat, 2012-03-31 12:28
1
2,555 by twopint23oz
Mon, 2014-04-21 06:47
Normal topic error running the sample forlding script
by oppopomoz » Sat, 2012-03-17 06:15
1
2,058 by Sergey
Mon, 2014-04-21 06:47
Normal topic error running folding script on windows
by oppopomoz » Sun, 2012-03-18 15:56
2
2,757 by Sergey
Mon, 2014-04-21 06:47
Normal topic Bug with make_pose_from_sequence when incorporating non-standard ResidueTypes in PyRosetta
by twc254 » Sun, 2012-03-18 12:27
5
4,848 by twc254
Mon, 2014-04-21 06:47
Normal topic No read_resfile routine?
by gjbartlett » Mon, 2011-11-28 08:45
3
3,404 by gjbartlett
Mon, 2014-04-21 06:47
Normal topic Reading and writing structures using streams
by Lior » Mon, 2012-01-09 09:05
1
2,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic creating a pose from a pdb style string
by mmertens » Fri, 2012-01-06 01:01
3
3,665 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring issues - differs from command line vs .py file - for a simple ddG loop
by ara » Mon, 2011-10-24 13:16
8
6,612 by ara
Mon, 2014-04-21 06:47
Normal topic ligand.py script problem
by almeida » Tue, 2011-07-19 10:02
1
2,268 by msellers
Mon, 2014-04-21 06:47
Normal topic script "rebuild and refinement" sampling methodology for allosteric coupling
by Stefan » Thu, 2011-07-14 09:27
1
3,067 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingProtocol().set_autofoldtree Question
by brspurri » Fri, 2011-06-03 08:07
2
2,647 by evan
Mon, 2014-04-21 06:47
Normal topic ddg Script Problem
by jadolfbr » Thu, 2011-05-12 00:56
7
6,106 by brspurri
Mon, 2014-04-21 06:47
Normal topic 'DockingProtocol' object has no attribute 'setup_foldtree'
by karelk » Wed, 2011-05-04 06:24
3
4,002 by weitzner
Mon, 2014-04-21 06:47
Normal topic Protein design - PyRosetta Script problem
by AOK » Wed, 2011-02-09 04:10
4
6,054 by smlewis
Mon, 2014-04-21 06:47
Normal topic unwanted Glycines after PackRotamersMover
by oppopomoz » Tue, 2014-03-04 10:08
2
4,248 by jadolfbr
Mon, 2014-03-10 11:16
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