You are here
PyRosetta - Scripts
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:21 |
0 |
10,960 |
by admin Fri, 2015-09-04 16:15 |
|
|
read_mdl_sdf function not defined(molfile_to_params.py) by egecav » Wed, 2021-01-13 22:14 |
0 |
914 |
by egecav Thu, 2021-01-14 21:51 |
|
|
Scripts accompanying Hossenzadeh et al, 2001 by Ken » Wed, 2022-01-19 07:38 |
0 |
705 |
by Ken Wed, 2022-01-19 07:38 |
|
|
Pyrosetta doesn't recognize the correct docking partners by hamedkhakzad » Sun, 2018-12-23 11:54 |
0 |
1,364 |
by hamedkhakzad Sun, 2018-12-23 11:54 |
|
|
Argument Error while running Ligand_interface.py by Karthik » Sat, 2021-03-13 21:54 |
0 |
895 |
by Karthik Sat, 2021-03-13 21:54 |
|
|
%time results = list(xml_obj(pose_obj)) error by TENY BAEK » Wed, 2022-11-02 23:31 |
0 |
686 |
by TENY BAEK Wed, 2022-11-02 23:31 |
|
|
setup_foldtree not maintaining partners by alkaline_lemon » Fri, 2021-07-30 09:17 |
0 |
853 |
by alkaline_lemon Fri, 2021-07-30 09:17 |
|
|
getting .params file for a ligand composed of protein and lipid by hajar » Wed, 2020-04-22 19:47 |
0 |
1,063 |
by hajar Wed, 2020-04-22 19:47 |
|
|
Is there a side-program enabling us to see the clashes and interactions between ligand and protein? by egecav » Fri, 2021-02-05 04:42 |
0 |
919 |
by egecav Fri, 2021-02-05 04:42 |
|
|
Residue Pair Energy by sujigeorge1979 » Thu, 2020-02-13 03:36 |
0 |
1,411 |
by sujigeorge1979 Thu, 2020-02-13 20:06 |
|
|
Fragment Insertion to Generate a Loop by zahra.mazh92 » Tue, 2019-10-08 12:50 |
0 |
1,456 |
by zahra.mazh92 Tue, 2019-10-08 12:50 |
|
|
How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:28 |
0 |
1,092 |
by michelleqyh Tue, 2020-08-04 07:28 |
|
|
Ultrafast shape recognition by Run » Tue, 2013-11-19 00:23 |
1 |
3,191 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Changing the Number of Cycles of D110_DNA_interface.py Script by mrodr26 » Mon, 2016-10-24 11:33 |
1 |
2,463 |
by rmoretti Mon, 2016-11-14 13:56 |
|
|
ligand.py script problem by almeida » Tue, 2011-07-19 10:02 |
1 |
3,329 |
by msellers Mon, 2014-04-21 06:47 |
|
|
ConstantLengthFragSet(3)..read_fragment_file RuntimeError by john8611 » Mon, 2014-09-29 07:53 |
1 |
3,650 |
by rmoretti Mon, 2014-09-29 15:14 |
|
|
Help with ddg_monomer in pyrosetta by covadiuc » Wed, 2018-01-10 08:30 |
1 |
2,301 |
by rmoretti Tue, 2018-01-30 06:56 |
|
|
Protein Structure Prediction using PyRosetta, suggestions wanted :) by oppopomoz » Tue, 2012-05-15 09:40 |
1 |
4,127 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
script "rebuild and refinement" sampling methodology for allosteric coupling by Stefan » Thu, 2011-07-14 09:27 |
1 |
4,133 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Incomplete Error message by tlc55555 » Mon, 2019-07-22 14:47 |
1 |
1,932 |
by rmoretti Mon, 2019-11-04 12:47 |
|
|
Total score for individual residue by ac.research » Tue, 2017-06-06 05:24 |
1 |
2,769 |
by jadolfbr Tue, 2017-06-06 16:14 |
|
|
Mutate residue with NCAA by tttt » Fri, 2020-12-04 14:53 |
1 |
1,756 |
by vmulligan Fri, 2020-12-04 15:25 |
|
|
How to make .frags files by krosika1 » Thu, 2021-07-08 18:16 |
1 |
1,237 |
by zivben Sun, 2021-08-01 02:44 |
|
|
error with extend_terminus.py by bigjim1309 » Wed, 2018-07-04 00:47 |
1 |
2,399 |
by MNP1986 Tue, 2018-07-31 05:17 |
|
|
error running the sample forlding script by oppopomoz » Sat, 2012-03-17 06:15 |
1 |
3,071 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
problem of renamed atoms in running molfile_to_params.py by hajar » Wed, 2020-04-22 19:17 |
1 |
2,217 |
by matteoferla Mon, 2020-05-04 02:16 |
|
|
ValueError: can only read V2000 format files by egecav » Wed, 2021-01-20 13:49 |
1 |
1,452 |
by rmoretti Wed, 2021-01-20 16:17 |
|
|
PackRotamersMover in another way by hlinn » Mon, 2022-02-07 07:10 |
1 |
1,101 |
by rmoretti Mon, 2022-02-07 08:57 |
|
|
PyRosetta Folding.py script by twopint23oz » Sat, 2012-03-31 12:28 |
1 |
3,587 |
by twopint23oz Mon, 2014-04-21 06:47 |
|
|
loop modeling error 'CcdLoopClosureMover' object is not callable by jai_INMAS » Tue, 2013-10-22 01:23 |
1 |
3,136 |
by Labonte Mon, 2014-09-08 09:07 |
|
|
Error running D100_Docking.py by Rodriguez » Fri, 2021-06-25 11:32 |
1 |
1,385 |
by matteoferla Tue, 2021-06-29 08:54 |
|
|
Reading and writing structures using streams by Lior » Mon, 2012-01-09 09:05 |
1 |
3,000 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
dump_scored_pdb by allan.ferrari » Wed, 2020-02-19 07:21 |
1 |
1,898 |
by jadolfbr Wed, 2020-02-19 08:14 |
|
|
error running folding script on windows by oppopomoz » Sun, 2012-03-18 15:56 |
2 |
4,097 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
adding greek_alphabets in non-canonical AA parameter generation by hajar » Wed, 2020-06-03 14:00 |
2 |
2,143 |
by hajar Wed, 2020-06-03 15:41 |
|
|
Minimization of structure after each trial move in PackRotamersMover by wymore-ornl » Fri, 2013-08-16 18:58 |
2 |
4,157 |
by wymore-ornl Mon, 2014-04-21 06:48 |
|
|
__init__.py - problem with runing the script by peony » Thu, 2013-10-31 00:35 |
2 |
4,474 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
create heparan sulfate using pyrosetta by tarsis » Sat, 2018-12-15 23:11 |
2 |
2,587 |
by tarsis Sun, 2018-12-16 20:21 |
|
|
Script for precalculating rotamer energies by pachecoj » Tue, 2013-08-06 08:59 |
2 |
4,129 |
by MarkW Mon, 2015-07-27 05:36 |
|
|
unwanted Glycines after PackRotamersMover by oppopomoz » Tue, 2014-03-04 10:08 |
2 |
19,986 |
by jadolfbr Mon, 2014-03-10 11:16 |
|
|
CONECT information for PDB files by raw sequence by Fata » Wed, 2022-06-22 01:47 |
2 |
1,330 |
by Fata Thu, 2022-06-23 07:56 |
|
|
Protein Structure Prediction by Nuria » Thu, 2012-04-05 12:36 |
2 |
4,410 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
DockingProtocol().set_autofoldtree Question by brspurri » Fri, 2011-06-03 08:07 |
2 |
4,055 |
by evan Mon, 2014-04-21 06:47 |
|
|
Script running, but returns no results by chinhsutran » Fri, 2013-11-22 06:19 |
2 |
4,321 |
by chinhsutran Mon, 2014-04-21 06:48 |
|
|
Symmetrical Docking Example by johnwo1990 » Wed, 2017-03-08 04:25 |
2 |
5,735 |
by johnwo1990 Thu, 2017-03-09 12:16 |
|
|
'DockingProtocol' object has no attribute 'setup_foldtree' by karelk » Wed, 2011-05-04 06:24 |
3 |
5,686 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
creating a pose from a pdb style string by mmertens » Fri, 2012-01-06 01:01 |
3 |
5,591 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
pyrosetta docking script not reading/finding pdb files by Amy F » Tue, 2019-04-30 09:21 |
3 |
4,122 |
by danpf Tue, 2019-04-30 12:02 |
|
|
params_list by tjn » Tue, 2013-07-09 07:19 |
3 |
4,817 |
by tjn Mon, 2014-04-21 06:48 |
|
|
symmetric design w/ hbnet and unsatisfied_buried_penalty score terms by saz » Tue, 2020-12-08 11:37 |
3 |
2,273 |
by vmulligan Fri, 2020-12-11 19:05 |
|
|
No read_resfile routine? by gjbartlett » Mon, 2011-11-28 08:45 |
3 |
5,035 |
by gjbartlett Mon, 2014-04-21 06:47 |
|
|
script recommendations? for high res docking from low res by Amy F » Wed, 2019-05-01 07:59 |
3 |
3,610 |
by rmoretti Thu, 2019-05-09 14:05 |
|
|
Protein design - PyRosetta Script problem by AOK » Wed, 2011-02-09 04:10 |
4 |
8,099 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error when run script "thread_pdb_from_alignment.py" by carlos_andre » Fri, 2018-03-09 09:38 |
4 |
4,636 |
by carlos_andre Tue, 2018-03-13 07:13 |
|
|
molfile_to_params.py by iGemBoulder » Fri, 2019-08-02 12:15 |
5 |
5,904 |
by egecav Mon, 2021-01-18 05:27 |
|
|
insert pose into pose by tttt » Sun, 2020-02-16 10:35 |
5 |
5,076 |
by tttt Mon, 2020-02-17 08:01 |
|
|
Bug with make_pose_from_sequence when incorporating non-standard ResidueTypes in PyRosetta by twc254 » Sun, 2012-03-18 12:27 |
5 |
7,360 |
by twc254 Mon, 2014-04-21 06:47 |
|
|
D100 Docking script error test.output by Amy F » Fri, 2019-04-26 08:29 |
5 |
5,290 |
by Amy F Tue, 2019-04-30 08:39 |
|
|
using MonteCarlo to fold a random structure into a helical structure by Run » Tue, 2013-10-22 05:48 |
5 |
8,754 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Loop modeling script - unwanted change of amino acid identities by smith1634 » Fri, 2014-11-21 08:42 |
5 |
6,935 |
by rmoretti Fri, 2014-12-05 00:47 |
|
|
add water into protein interfaces using solvated rotamer? by chinhsutran » Sat, 2013-07-20 07:33 |
5 |
7,030 |
by chinhsutran Mon, 2014-04-21 06:48 |
|
|
Pyrosetta: restrict repack (and minimization) to specific region by kschu » Tue, 2019-07-02 10:52 |
6 |
7,346 |
by kschu Wed, 2019-07-10 23:36 |
|
|
Freezing arbitrary backbone dihedral angles... by Mon » Thu, 2015-09-03 07:45 |
7 |
9,345 |
by Mon Thu, 2015-09-10 01:46 |
|
|
ddg Script Problem by jadolfbr » Thu, 2011-05-12 00:56 |
7 |
9,249 |
by brspurri Mon, 2014-04-21 06:47 |
|
|
Docking.py - protocols.docking.DockingInitialPerturbation: moving together failed. Aborting DockingSlideIntoContact. by pepfolder » Fri, 2012-06-08 13:56 |
7 |
11,058 |
by fradom Mon, 2016-03-07 06:58 |
|
|
Different Pose Energy Values before and after Dumping by oppopomoz » Wed, 2013-02-06 09:35 |
8 |
10,675 |
by oppopomoz Mon, 2014-04-21 06:47 |
|
|
Multi Ligand docking to a protein by Vaish86 » Sun, 2013-08-04 10:46 |
8 |
15,098 |
by xpzhang Mon, 2014-04-21 06:48 |
|
|
Scoring issues - differs from command line vs .py file - for a simple ddG loop by ara » Mon, 2011-10-24 13:16 |
8 |
9,967 |
by ara Mon, 2014-04-21 06:47 |
|
|
Script not working by jai_INMAS » Wed, 2013-06-12 04:38 |
8 |
15,318 |
by jai_INMAS Mon, 2014-04-21 06:48 |
|
|
about deNovoProteinMimeticsGen2 by zhangying1990 » Mon, 2019-01-14 17:09 |
9 |
7,517 |
by sia Wed, 2022-04-27 18:22 |
|
|
Docking- Binding Energy by abdul » Thu, 2012-11-15 02:56 |
10 |
16,259 |
by jai_INMAS Mon, 2014-04-21 06:47 |
|
|
docking.py auto-detect partners by abdul » Sun, 2012-11-04 08:36 |
10 |
11,705 |
by abdul Mon, 2014-04-21 06:47 |
|
|
Efficient local energy computation by Mon » Mon, 2014-11-17 08:57 |
10 |
13,224 |
by rmoretti Fri, 2015-01-02 09:24 |
|
|
scorefxn.show(pose) method in python shell and IDLE by peony » Mon, 2013-07-08 01:34 |
14 |
19,608 |
by peony Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
