You are here

Rosetta 3 - Applications

Pages

Topic / Topic starter Replies Views Last postsort ascending
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
17,217 by admin
Fri, 2015-09-04 16:17
Normal topic BridgeChains mover deletes residues at break
by kmj » Thu, 2024-02-22 12:14
0
141 by kmj
Thu, 2024-02-22 12:14
Normal topic remove membrane for RosettaMPdock
by lluoto » Wed, 2023-12-06 06:22
2
411 by lluoto
Wed, 2024-02-21 17:39
Normal topic Errors about rifdock step 15
by ng98 » Thu, 2024-02-01 17:41
0
235 by ng98
Thu, 2024-02-01 17:41
Normal topic PIPER-FlexPepDock [commercial user]
by Skelly » Tue, 2024-01-23 16:14
0
237 by Skelly
Tue, 2024-01-30 14:08
Normal topic Inquiry about MPI-Rosetta: Issue with -nstruct Parameter
by serena » Wed, 2024-01-24 00:59
1
168 by rmoretti
Wed, 2024-01-24 08:46
Normal topic Error about rifdocking step 15
by ng98 » Sun, 2024-01-21 16:30
4
292 by ng98
Tue, 2024-01-23 17:01
Normal topic Memory Leak: Relax Density MPI RAM overusage kills process
by mmfarrugia » Sun, 2023-12-31 12:02
5
381 by mmfarrugia
Fri, 2024-01-12 10:35
Normal topic the results obtained after docking using RosettaDock and ZDOCK
by aha » Thu, 2024-01-04 21:13
1
235 by rmoretti
Thu, 2024-01-11 14:39
Normal topic Error about rifdocking step 12
by ng98 » Mon, 2024-01-08 16:27
3
313 by ng98
Tue, 2024-01-09 23:42
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
7
2,565 by ng98
Mon, 2024-01-08 16:24
Normal topic Broken structure of local docking of replicadock2
by Jun » Thu, 2023-12-28 00:26
0
207 by Jun
Thu, 2023-12-28 00:26
Normal topic Is Biopython required to run pdb_renumber.py?
by ljjjxay » Wed, 2023-11-22 20:00
6
600 by ljjjxay
Wed, 2023-12-06 19:24
Normal topic analyze_flex_ddG.py
by valebut » Tue, 2023-11-28 04:30
1
298 by Aleksandra Panfilova
Tue, 2023-11-28 05:34
Normal topic I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi
by Edward » Sat, 2023-11-25 04:58
1
296 by Edward
Sat, 2023-11-25 05:17
Normal topic Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap)
by Seongsung » Fri, 2023-11-24 05:09
0
207 by Seongsung
Fri, 2023-11-24 13:14
Normal topic Cannot install DAlphaBall
by gerdos » Fri, 2023-10-13 07:55
1
534 by Seongsung
Fri, 2023-11-24 04:52
Normal topic nomenclature question in molfile_to_params_polymer.py in ncaa design
by lei » Tue, 2023-11-21 09:47
2
274 by lei
Wed, 2023-11-22 06:23
Normal topic Match: Outputs with 0 hits for cst and clashes with sidechains
by uka147 » Wed, 2023-11-08 06:11
0
219 by uka147
Thu, 2023-11-09 01:36
Normal topic 'Use_filters true' option - failure of AbInitio Relax application
by Corvin » Wed, 2023-11-08 06:34
0
170 by Corvin
Wed, 2023-11-08 06:34
Normal topic Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins"
by vitoralmeida1808 » Mon, 2023-11-06 09:43
0
189 by vitoralmeida1808
Mon, 2023-11-06 09:43
Normal topic Are catalytic residues mutatable?
by uka147 » Thu, 2023-10-26 03:49
3
531 by uka147
Mon, 2023-10-30 01:53
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
4
3,526 by elpipasp
Thu, 2023-10-19 04:37
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
2
1,290 by jxw
Wed, 2023-10-11 10:04
Normal topic Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock?
by lei » Mon, 2023-09-11 23:34
2
466 by lei
Wed, 2023-09-13 19:35
Normal topic ValueError("Path %s does not exist!" % path_name) for rna_helix.py
by kameisel » Wed, 2023-08-16 00:39
2
469 by kameisel
Wed, 2023-09-13 02:16
Normal topic FixedBB design output no beta strands
by tkoh » Fri, 2023-08-25 01:02
1
376 by rmoretti
Tue, 2023-08-29 20:13
Normal topic How do I compare the results of InterfaceAnalyzer using different trimers as input?
by franz72 » Sun, 2023-08-06 10:10
0
279 by franz72
Sun, 2023-08-06 10:10
Normal topic Rosetta Design: Non-canonical amino acid substrate not accepted
by Friedrich Ehinger » Fri, 2023-08-04 00:09
2
510 by Friedrich Ehinger
Fri, 2023-08-04 08:38
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
2
3,032 by Jane_002
Thu, 2023-08-03 19:47
Normal topic RECCESS-Rosetta Segmentation Fault with nonnatural residues
by skorro » Tue, 2023-07-25 17:13
1
399 by skorro
Fri, 2023-07-28 12:20
Normal topic Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line"
by ramon-arg » Mon, 2023-07-24 17:56
0
280 by ramon-arg
Mon, 2023-07-24 17:56
Normal topic ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType!
by walidabualafia » Thu, 2023-07-20 09:44
1
374 by rmoretti
Thu, 2023-07-20 10:08
Normal topic fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz
by yueyuedake » Wed, 2023-07-12 03:36
6
892 by yueyuedake
Sun, 2023-07-16 19:17
Normal topic rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177
by ramon-arg » Thu, 2023-07-13 18:41
2
472 by ramon-arg
Fri, 2023-07-14 07:47
Normal topic Memory Leak in FragmentPicker.cxx11thread application
by Corvin » Tue, 2023-07-11 06:04
0
275 by Corvin
Thu, 2023-07-13 05:30
Normal topic PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD
by WBNeT » Fri, 2023-07-07 10:58
1
418 by jadolfbr
Mon, 2023-07-10 09:05
Normal topic EMERALD method not working, Rosetta version not available for download
by seba » Thu, 2023-05-04 08:14
6
1,344 by rmoretti
Mon, 2023-07-10 08:57
Normal topic cluster docked pdbs
by kwu030 » Wed, 2023-06-14 22:48
1
529 by rmoretti
Wed, 2023-06-28 12:36
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
0
353 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic Silent File Scores Missing: RNA Protein Complex Predition
by axio23 » Fri, 2023-06-16 05:45
0
351 by axio23
Fri, 2023-06-16 05:45
Normal topic non-zero ddG of binding even without mutations
by top-gun98 » Wed, 2023-06-07 17:19
0
374 by top-gun98
Wed, 2023-06-07 17:19
Normal topic CC (or similar) calculation for cryoEM fitting
by almeida85 » Tue, 2023-05-16 01:32
2
634 by almeida85
Tue, 2023-05-23 08:23
Normal topic dG_separated values comparison
by almeida85 » Mon, 2023-04-24 03:34
0
504 by almeida85
Tue, 2023-05-16 01:02
Normal topic Error with xml script
by almeida85 » Tue, 2023-03-28 01:53
0
550 by almeida85
Tue, 2023-05-16 01:00
Normal topic Simple_cycpep_predict with crosslinker BBMB
by Ken » Tue, 2023-05-09 08:52
0
429 by Ken
Tue, 2023-05-09 08:52
Normal topic Docking one protein into interface between two other proteins
by Cheems » Sat, 2023-05-06 09:49
3
785 by rmoretti
Mon, 2023-05-08 13:14
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 13:41
1
467 by rmoretti
Fri, 2023-05-05 13:44
Normal topic unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file
by Sajjad » Wed, 2022-11-30 11:40
1
4,092 by FJOM
Wed, 2023-05-03 07:21
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
6
6,847 by Aben
Tue, 2023-04-18 01:31
Normal topic XML validation failing
by mb0261 » Fri, 2023-04-14 14:53
11
1,955 by mb0261
Mon, 2023-04-17 17:38
Normal topic error in loop remodeling
by syntekabio2019 » Wed, 2023-04-05 01:00
0
414 by syntekabio2019
Wed, 2023-04-05 01:01
Normal topic Protein Protein Docking with Linker
by mrinal » Mon, 2023-03-20 15:58
0
762 by mrinal
Mon, 2023-03-20 15:58
Normal topic core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by ldx022 » Thu, 2023-03-16 04:13
0
1,109 by ldx022
Thu, 2023-03-16 04:13
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,272 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic ReplicaDock 2.0 Native vs Input Structure Flags Confusion
by katherinemccoy » Tue, 2022-12-27 06:42
2
4,633 by katherinemccoy
Tue, 2023-02-28 18:19
Normal topic how to control alignment for energy_based_clustering
by xfradera » Tue, 2023-02-28 10:13
0
1,811 by xfradera
Tue, 2023-02-28 10:13
Normal topic ligand_docking
by yang » Thu, 2023-02-16 04:37
2
2,413 by yang
Wed, 2023-02-22 19:18
Normal topic St13runtime_error in Rosetta ligand docking
by syntekabio2019 » Thu, 2023-02-09 18:18
2
2,988 by syntekabio2019
Sun, 2023-02-19 18:39
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
0
2,088 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic Comparing a prediction to the native structure and calculate RMSD for RNA
by danwolf_33 » Thu, 2023-02-09 09:32
0
1,871 by danwolf_33
Thu, 2023-02-09 09:34
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
4
3,328 by rmoretti
Mon, 2023-02-06 15:06
Normal topic prepack - residue count fails
by xfradera » Fri, 2023-01-27 06:36
0
1,164 by xfradera
Fri, 2023-01-27 06:36
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
3
4,665 by Patrícia Antunes
Fri, 2023-01-20 11:55
Normal topic snugdock(sequence position requested was greater than the number of residues in the pose)
by lei » Thu, 2023-01-12 01:40
5
2,449 by lei
Fri, 2023-01-20 08:11
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
0
912 by SubhaK
Wed, 2023-01-18 23:33
Normal topic Snugdock Error: The sequence position requested was greater than the number of residues
by stannowitz » Tue, 2023-01-17 07:37
0
1,071 by stannowitz
Tue, 2023-01-17 23:48
Normal topic RosettaCM Ignoring Ligand
by Delfosse57 » Sun, 2022-12-04 12:05
0
3,918 by Delfosse57
Sun, 2022-12-04 12:05
Normal topic Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol
by Sajjad » Mon, 2022-11-28 14:09
3
4,891 by Sajjad
Wed, 2022-11-30 11:50
Normal topic The confussion about an example in tutorial in Rosetta Virtual Workshop 2020
by ldx022 » Tue, 2022-11-29 04:58
3
4,315 by ldx022
Tue, 2022-11-29 08:38
Normal topic Score.sc file showing total score 0 for all protein structures created
by aanshi » Wed, 2022-11-23 11:13
1
3,509 by nannemdp
Mon, 2022-11-28 09:39
Normal topic Help to understand docking results
by rtorquato » Fri, 2022-11-25 12:05
0
1,468 by rtorquato
Fri, 2022-11-25 12:05
Normal topic snugdock: constrained backbone
by mahendra » Mon, 2022-11-14 02:51
0
1,763 by mahendra
Mon, 2022-11-14 02:51
Normal topic Ligand Rotamer Control in Macther
by Hirbond » Tue, 2022-10-25 13:01
0
1,707 by Hirbond
Wed, 2022-10-26 12:57
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
0
1,647 by almeida85
Tue, 2022-10-25 02:32
Normal topic Small molecule dimer/trimer/etc docking
by lukasz » Tue, 2022-10-04 06:49
1
1,702 by rmoretti
Tue, 2022-10-04 07:57
Normal topic Symmetry definition question
by mrconde96 » Sun, 2022-10-02 05:34
0
1,341 by mrconde96
Sun, 2022-10-02 05:34
Normal topic Old Knotfind algorithm
by Martin Floor » Thu, 2022-09-22 07:28
1
1,105 by rmoretti
Fri, 2022-09-23 09:38
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
1,763 by erpannec
Thu, 2022-09-15 05:17
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
0
817 by almeida85
Thu, 2022-09-08 06:54
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
0
834 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic Macrocycle from a C-terminal amidated peptide
by almeida85 » Thu, 2022-08-18 07:53
0
899 by almeida85
Thu, 2022-08-18 07:53
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
905 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
1,768 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
1,650 by almeida85
Thu, 2022-08-11 00:58
Normal topic Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job
by eyaaaan » Sun, 2022-08-07 22:03
0
872 by eyaaaan
Tue, 2022-08-09 21:59
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
0
1,182 by chandana
Tue, 2022-08-09 20:36
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
4,091 by chandana
Tue, 2022-08-09 20:27
Normal topic Unknown Element "SE" when generating NCAA params file containing selenium
by liuwenxi » Thu, 2022-08-04 16:24
2
1,287 by liuwenxi
Fri, 2022-08-05 09:50
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
0
819 by Roberto
Thu, 2022-08-04 07:22
Normal topic pMHC modelling
by Roberto » Thu, 2022-08-04 07:11
0
772 by Roberto
Thu, 2022-08-04 07:11
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
806 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Benchmarking Rosetta DDG Methods
by sareeves96 » Fri, 2022-07-29 09:55
0
912 by sareeves96
Fri, 2022-07-29 09:55
Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
1
980 by matteoferla
Wed, 2022-07-20 10:50
Normal topic shape complementarity
by holdenj » Fri, 2022-07-15 13:24
1
1,065 by rmoretti
Fri, 2022-07-15 13:50
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
0
790 by zmfowler
Thu, 2022-07-14 05:34
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
1,007 by sc19
Thu, 2022-07-14 03:40
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
0
909 by sc19
Thu, 2022-07-14 01:34
Normal topic Per residue total score
by johnnytam100 » Wed, 2022-07-13 21:57
0
751 by johnnytam100
Wed, 2022-07-13 21:57
Normal topic SnugDock Partners parameter
by tyang39 » Fri, 2022-07-08 10:02
1
1,020 by rmoretti
Fri, 2022-07-08 10:27

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications