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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,457 by admin
Fri, 2015-09-04 16:17
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
858 by rmoretti
Fri, 2015-09-04 10:25
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
339 by Denise
Thu, 2017-06-15 04:26
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,193 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54
7
4,323 by lanselibai
Sat, 2015-01-03 08:18
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
3,447 by lanselibai
Fri, 2014-10-17 05:10
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
1,764 by smlewis
Mon, 2014-04-21 06:47
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
8,080 by lanselibai
Wed, 2014-10-15 01:54
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
976 by rmoretti
Tue, 2014-11-04 08:53
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
6,107 by rmoretti
Mon, 2015-09-28 15:00
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
136 by swarekwood
Fri, 2017-08-25 05:08
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
1,773 by smlewis
Mon, 2014-04-21 06:47
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
8
3,686 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
6,905 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
1,287 by yzhou
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
1,792 by agulsevin
Mon, 2014-04-21 06:48
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
12,377 by smlewis
Thu, 2017-06-01 10:02
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
3,251 by rmoretti
Tue, 2014-08-12 08:15
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
1,184 by krlitros87
Wed, 2014-10-22 09:31
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
2,082 by justin
Mon, 2014-04-21 06:47
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
8,098 by masterofpuppets
Tue, 2015-01-27 04:26
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
2,716 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
1,723 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
4,800 by rmoretti
Fri, 2016-04-29 08:57
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
2,492 by skovacs
Mon, 2014-04-21 06:47
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
928 by rmoretti
Mon, 2017-01-23 08:52
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
5,730 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
42 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
883 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
2,510 by rmoretti
Tue, 2014-11-04 10:28
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
2,414 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
2,047 by parmef
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
3,367 by atruong
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
1,198 by ks
Mon, 2016-09-12 03:14
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
1,440 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
4,284 by Run
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
2,477 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
2,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
1,739 by smlewis
Mon, 2014-04-21 06:48
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
785 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
244 by brspurri
Thu, 2017-06-01 10:58
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
1,649 by rmoretti
Mon, 2014-04-21 06:48
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
450 by yigallah
Mon, 2014-12-15 08:46
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
216 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
449 by bp
Thu, 2016-12-22 07:54
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,378 by rmoretti
Mon, 2014-05-12 08:25
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
3,257 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
713 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
1,738 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
339 by smlewis
Mon, 2017-02-06 20:46
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
2,306 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
347 by smlewis
Fri, 2016-12-23 07:04
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
2,285 by rmoretti
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
661 by sgourn
Tue, 2015-08-18 18:25
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
1,392 by beowulfey
Tue, 2015-06-23 16:10
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
209 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
1,903 by protos_heis
Mon, 2014-04-21 06:47
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,124 by fred
Mon, 2014-04-21 06:47
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
1,279 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
1,022 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
1,280 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
1,517 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
693 by attesor
Mon, 2015-10-26 09:01
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
1,300 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
1,284 by dswhit
Tue, 2015-04-21 10:14
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
808 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
3,151 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
457 by sjyang7
Sat, 2017-06-03 06:09
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
537 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
1,238 by mdyini
Mon, 2014-04-21 06:47
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
741 by rmoretti
Wed, 2014-12-03 19:07
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
1,685 by lanselibai
Wed, 2014-09-24 13:21
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
1,318 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
916 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
677 by rmoretti
Tue, 2015-11-24 16:07
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
1,756 by sacch
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
4,569 by fred
Thu, 2014-03-27 11:29
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
1,177 by rmoretti
Mon, 2014-10-06 16:00
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
1,662 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
564 by aep
Sat, 2016-08-13 13:03
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,164 by smlewis
Mon, 2014-04-21 06:48
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
338 by rmoretti
Wed, 2017-01-11 13:00
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
1,804 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
2,365 by eskici
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
1,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
1,674 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
254 by jrporter
Wed, 2017-07-05 06:30
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
2,530 by rmoretti
Tue, 2015-03-31 08:56
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,316 by smlewis
Mon, 2014-05-12 08:32
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
1,299 by kbuhr
Mon, 2016-03-28 01:08
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,130 by smlewis
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
447 by smlewis
Tue, 2017-07-04 15:42
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
586 by attesor
Thu, 2017-03-16 01:21
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
488 by fred
Wed, 2014-12-03 12:28
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,215 by nawsad
Mon, 2014-04-21 06:48
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
663 by aaj
Wed, 2016-02-24 07:37
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
803 by rmoretti
Mon, 2014-05-26 09:29
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
657 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
2,698 by petrikigor
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
2,679 by Marius1987
Fri, 2016-02-05 07:20

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