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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,327 |
by admin Fri, 2015-09-04 16:17 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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3,198 |
by rmoretti Fri, 2015-09-04 10:25 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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4,204 |
by Denise Thu, 2017-06-15 04:26 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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4,219 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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1,663 |
by rmoretti Mon, 2019-08-26 12:49 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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1,828 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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10,941 |
by lanselibai Sat, 2015-01-03 08:18 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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2,327 |
by danpf Mon, 2019-09-16 09:51 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,569 |
by danpf Thu, 2019-10-10 09:55 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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2,080 |
by Danielsebas Sun, 2019-09-08 02:08 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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2,277 |
by Corvin Thu, 2019-10-10 01:12 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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7,511 |
by lanselibai Fri, 2014-10-17 05:10 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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5,193 |
by smlewis Mon, 2014-04-21 06:47 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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898 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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24,865 |
by lanselibai Wed, 2014-10-15 01:54 |
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"Segmentation Fault" error occurred when Running a pilot job by Cooben » Thu, 2024-04-18 19:47 |
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by Cooben Thu, 2024-04-18 19:47 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,874 |
by rmoretti Tue, 2014-11-04 08:53 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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4,210 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,351 |
by rmoretti Mon, 2020-09-14 06:36 |
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'Use_filters true' option - failure of AbInitio Relax application by Corvin » Wed, 2023-11-08 06:34 |
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218 |
by Corvin Wed, 2023-11-08 06:34 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
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17,582 |
by rmoretti Mon, 2015-09-28 15:00 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,664 |
by swarekwood Fri, 2017-08-25 05:08 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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5,613 |
by smlewis Mon, 2014-04-21 06:47 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,422 |
by danpf Tue, 2019-09-03 10:15 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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2,538 |
by Corvin Tue, 2019-08-27 00:46 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
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11,338 |
by egecav Mon, 2021-01-18 05:41 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
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19,485 |
by Rosettasz Mon, 2014-04-21 06:48 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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5,021 |
by yzhou Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
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4,100 |
by agulsevin Mon, 2014-04-21 06:48 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
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38,526 |
by smlewis Thu, 2017-06-01 10:02 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,410 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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792 |
by jseco Mon, 2021-03-08 03:40 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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9,679 |
by rmoretti Tue, 2014-08-12 08:15 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,430 |
by krlitros87 Wed, 2014-10-22 09:31 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,841 |
by justin Mon, 2014-04-21 06:47 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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20,618 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
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7,196 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,501 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
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12,140 |
by rmoretti Fri, 2016-04-29 08:57 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
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7,656 |
by skovacs Mon, 2014-04-21 06:47 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,934 |
by rmoretti Mon, 2017-01-23 08:52 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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16,473 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,258 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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3,038 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,703 |
by rmoretti Tue, 2014-11-04 10:28 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,636 |
by rmoretti Fri, 2019-04-05 00:18 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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5,895 |
by jadolfbr Tue, 2014-10-07 16:05 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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2,188 |
by rmoretti Fri, 2018-11-23 07:59 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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931 |
by aarono Tue, 2020-06-02 00:13 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,463 |
by parmef Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
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11,351 |
by atruong Mon, 2014-04-21 06:47 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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5,442 |
by ks Mon, 2016-09-12 03:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,532 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
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13,459 |
by Run Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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7,725 |
by rmoretti Mon, 2014-04-21 06:48 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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1,019 |
by sia Wed, 2022-04-27 19:59 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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5,005 |
by smlewis Mon, 2014-04-21 06:47 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,688 |
by smlewis Mon, 2014-04-21 06:48 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,890 |
by vmulligan Thu, 2019-06-13 14:59 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,483 |
by vmulligan Thu, 2019-06-13 15:01 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,375 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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5,400 |
by purvi24 Mon, 2019-03-11 06:43 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,444 |
by everyday847 Fri, 2019-08-23 04:08 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,469 |
by brspurri Thu, 2017-06-01 10:58 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,702 |
by rmoretti Mon, 2014-04-21 06:48 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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2,457 |
by mags33 Wed, 2019-11-06 09:35 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,436 |
by yigallah Mon, 2014-12-15 08:46 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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3,340 |
by rmoretti Thu, 2017-08-24 11:00 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,738 |
by bp Thu, 2016-12-22 07:54 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,442 |
by rmoretti Mon, 2014-05-12 08:25 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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8,237 |
by Genta Tue, 2019-10-29 18:46 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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7,143 |
by rmoretti Mon, 2014-04-21 06:47 |
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analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
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370 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,299 |
by nannemdp Mon, 2021-09-27 14:22 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,416 |
by jadolfbr Wed, 2015-09-09 12:35 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,488 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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5,058 |
by rmoretti Wed, 2015-09-09 12:08 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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1,987 |
by mxp Mon, 2019-09-23 01:40 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,280 |
by smlewis Mon, 2017-02-06 20:46 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,494 |
by smlewis Tue, 2019-10-22 09:45 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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6,385 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
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317 |
by ramon-arg Mon, 2023-07-24 17:56 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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2,342 |
by agctomer Sun, 2021-01-31 01:06 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,222 |
by drewaight Mon, 2020-11-02 17:07 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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3,084 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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3,634 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,935 |
by vmulligan Tue, 2020-03-17 11:35 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
1,008 |
by wentlewi Fri, 2020-03-13 03:24 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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862 |
by SWM Fri, 2020-01-24 11:22 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,892 |
by smlewis Fri, 2016-12-23 07:04 |
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Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
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641 |
by uka147 Mon, 2023-10-30 01:53 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,938 |
by rmoretti Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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2,286 |
by sgourn Tue, 2015-08-18 18:25 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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4,320 |
by beowulfey Tue, 2015-06-23 16:10 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,307 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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5,256 |
by protos_heis Mon, 2014-04-21 06:47 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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3,272 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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2,255 |
by fred Mon, 2014-04-21 06:47 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
951 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,872 |
by rmoretti Mon, 2014-04-21 06:48 |
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