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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,769 by admin
Fri, 2015-09-04 16:17
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
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11 by tsztain
Mon, 2019-02-18 14:10
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
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30 by danpf
Tue, 2019-02-19 14:11
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
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53 by ksy141
Mon, 2019-01-21 17:21
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
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61 by BuddySphinx
Mon, 2018-12-31 16:22
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
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63 by rlwoltz
Thu, 2019-01-24 19:43
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
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74 by ylwang
Sun, 2018-11-18 17:51
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
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79 by ekwan
Thu, 2018-12-06 15:10
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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79 by sizhang
Wed, 2018-12-05 15:22
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
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79 by meyer
Fri, 2018-12-14 09:40
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
84 by rmoretti
Tue, 2018-12-04 08:55
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
91 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
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93 by rmoretti
Wed, 2018-11-21 15:31
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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99 by dhirajks
Thu, 2018-12-13 19:34
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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106 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
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106 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
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106 by rmoretti
Fri, 2018-11-23 07:59
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
107 by rmoretti
Wed, 2018-11-21 15:10
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
114 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
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116 by mbakalar
Fri, 2018-08-31 13:06
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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119 by MA
Wed, 2018-09-05 00:50
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
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124 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
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125 by cossio
Thu, 2018-10-11 14:42
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
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131 by smlewis
Wed, 2018-12-12 16:51
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
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133 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
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135 by jadolfbr
Fri, 2018-11-09 14:53
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
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150 by tsztain
Mon, 2019-02-18 09:55
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
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155 by smlewis
Fri, 2018-07-27 13:32
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
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159 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
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165 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
176 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
177 by smlewis
Mon, 2018-10-15 08:42
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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180 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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180 by enmirts
Wed, 2018-03-28 10:34
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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189 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
189 by cossio
Fri, 2018-10-12 04:43
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
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191 by rmoretti
Fri, 2018-08-03 07:54
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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196 by evo_umich
Mon, 2018-04-02 12:13
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
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204 by amorin
Thu, 2018-09-06 11:10
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
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207 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
214 by rmoretti
Tue, 2018-04-10 15:29
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
220 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
227 by smlewis
Fri, 2018-09-14 10:34
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
232 by jlapin
Wed, 2018-08-01 07:15
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
234 by rmoretti
Fri, 2018-05-18 12:28
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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250 by asbelx
Fri, 2018-04-20 03:33
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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250 by sdh_h
Sun, 2017-12-17 06:07
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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254 by Neeraj
Wed, 2018-01-03 02:24
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
259 by rmoretti
Tue, 2018-04-10 15:34
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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264 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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269 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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272 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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280 by sn
Thu, 2017-10-05 17:07
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
286 by smlewis
Mon, 2018-09-10 11:48
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
287 by smlewis
Mon, 2018-05-07 11:42
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
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294 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
295 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
298 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
304 by rmoretti
Mon, 2018-01-15 16:14
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
304 by tsztain
Tue, 2018-12-11 13:41
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
305 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
309 by rmoretti
Tue, 2017-10-17 09:03
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
311 by rmoretti
Wed, 2018-02-21 15:21
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
328 by rmoretti
Mon, 2018-01-15 16:07
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
331 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
347 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
350 by rmoretti
Tue, 2018-01-16 07:24
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
351 by asbelx
Mon, 2018-06-18 22:34
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
355 by cossio
Fri, 2018-05-18 09:51
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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362 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
365 by smlewis
Mon, 2017-11-13 10:43
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
366 by smlewis
Mon, 2017-12-04 12:18
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
367 by kamau
Wed, 2017-12-13 14:31
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
373 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
378 by rmoretti
Tue, 2017-10-10 10:08
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
387 by rmoretti
Tue, 2017-10-10 09:54
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
389 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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389 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
398 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
400 by rmoretti
Fri, 2017-09-15 13:11
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
429 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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429 by ac.research
Mon, 2017-01-09 00:59
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
436 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
437 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
437 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
450 by cossio
Sun, 2018-03-11 09:12
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
454 by tong
Sun, 2018-06-24 23:30
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
455 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
457 by smlewis
Thu, 2017-02-09 21:50
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
461 by subha
Fri, 2018-04-20 12:49
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
464 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
482 by smlewis
Wed, 2018-08-08 15:48
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
483 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
485 by rmoretti
Fri, 2018-11-23 11:23
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
489 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
491 by rmoretti
Thu, 2017-05-18 13:51
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
493 by rmoretti
Wed, 2018-03-07 08:44
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
494 by dyu
Thu, 2017-09-28 18:54
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
500 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
501 by rmoretti
Mon, 2017-09-04 10:33

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