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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,735 by admin
Fri, 2015-09-04 16:17
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
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6 by meyer
Fri, 2018-12-14 09:40
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
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13 by BuddySphinx
Wed, 2018-12-12 18:58
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
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19 by ekwan
Thu, 2018-12-06 15:10
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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27 by dhirajks
Thu, 2018-12-13 19:34
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
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36 by rmoretti
Tue, 2018-12-04 08:55
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
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37 by ylwang
Sun, 2018-11-18 17:51
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
38 by smlewis
Wed, 2018-12-12 16:51
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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40 by sizhang
Wed, 2018-12-05 15:22
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
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42 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
43 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
46 by rmoretti
Fri, 2018-11-23 07:59
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
47 by rmoretti
Wed, 2018-11-21 15:31
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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63 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
64 by rmoretti
Wed, 2018-11-21 15:40
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
66 by rmoretti
Wed, 2018-11-21 15:10
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
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71 by cossio
Thu, 2018-10-11 14:42
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
77 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
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88 by mbakalar
Fri, 2018-08-31 13:06
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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93 by MA
Wed, 2018-09-05 00:50
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
1
95 by jadolfbr
Fri, 2018-11-09 14:53
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
99 by smlewis
Mon, 2018-10-15 08:42
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
113 by cossio
Fri, 2018-10-12 04:43
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
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116 by smlewis
Fri, 2018-07-27 13:32
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
122 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
124 by rmoretti
Thu, 2018-09-20 09:23
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
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126 by amorin
Thu, 2018-09-06 11:10
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
137 by rmoretti
Fri, 2018-08-03 08:16
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
140 by rmoretti
Thu, 2018-09-20 09:19
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
141 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
148 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
153 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
153 by enmirts
Wed, 2018-03-28 10:34
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
154 by rmoretti
Fri, 2018-08-03 08:26
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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157 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
157 by tsztain
Tue, 2018-12-11 13:41
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
157 by smlewis
Fri, 2018-09-14 10:34
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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159 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
169 by jlapin
Wed, 2018-08-01 07:15
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
170 by rmoretti
Tue, 2018-04-10 15:29
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
184 by rmoretti
Fri, 2018-05-18 12:28
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
187 by smlewis
Mon, 2018-09-10 11:48
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
194 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
210 by smlewis
Mon, 2018-05-07 11:42
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
215 by rmoretti
Tue, 2018-04-10 15:34
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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217 by sdh_h
Sun, 2017-12-17 06:07
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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218 by asbelx
Fri, 2018-04-20 03:33
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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219 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
222 by ashu4487
Mon, 2018-07-16 19:24
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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235 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
235 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
241 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
249 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
254 by sn
Thu, 2017-10-05 17:07
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
262 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
266 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
270 by cossio
Fri, 2018-05-18 09:51
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
272 by asbelx
Mon, 2018-06-18 22:34
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
273 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
274 by rmoretti
Tue, 2017-10-17 09:03
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
288 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
289 by rmoretti
Mon, 2018-01-15 16:07
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
291 by rmoretti
Thu, 2018-06-28 12:58
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
300 by rmoretti
Tue, 2018-01-16 07:24
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
306 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
310 by smlewis
Mon, 2017-12-04 12:18
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
317 by smlewis
Mon, 2017-11-13 10:43
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
321 by kamau
Wed, 2017-12-13 14:31
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
329 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
335 by rmoretti
Tue, 2017-10-10 10:08
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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341 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
341 by smlewis
Wed, 2018-08-08 15:48
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
343 by rmoretti
Tue, 2017-10-10 09:54
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
344 by rmoretti
Tue, 2018-01-30 07:51
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
346 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
349 by tong
Sun, 2018-06-24 23:30
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
361 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
362 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
363 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
372 by subha
Fri, 2018-04-20 12:49
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
388 by cossio
Sun, 2018-03-11 09:12
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
389 by rmoretti
Fri, 2018-11-23 11:23
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
7
391 by guffysl
Thu, 2018-07-26 12:19
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
398 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
404 by ac.research
Mon, 2017-01-09 00:59
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
407 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
414 by Loki01
Thu, 2018-04-12 08:28
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
419 by smlewis
Thu, 2017-02-09 21:50
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
425 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
425 by rmoretti
Mon, 2017-03-06 12:39
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
439 by rmoretti
Fri, 2017-03-24 13:39
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
440 by dyu
Thu, 2017-09-28 18:54
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
445 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
447 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
454 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
455 by rmoretti
Mon, 2017-05-15 08:54
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
460 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
461 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
463 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
471 by smlewis
Thu, 2018-06-14 10:26

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