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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,515 by admin
Fri, 2015-09-04 16:17
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
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25 by shadrinams
Mon, 2018-02-12 12:14
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
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31 by sn
Wed, 2018-02-14 11:00
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
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54 by rmoretti
Tue, 2018-01-16 07:24
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
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55 by rmoretti
Tue, 2018-01-30 07:51
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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59 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
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64 by rmoretti
Tue, 2018-01-30 07:35
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
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64 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
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65 by rmoretti
Mon, 2018-01-15 16:14
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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69 by sdh_h
Sun, 2017-12-17 06:07
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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70 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
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75 by rmoretti
Mon, 2018-01-15 16:07
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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77 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
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82 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
1
85 by Florent Langenfeld
Mon, 2018-02-05 01:04
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
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85 by smlewis
Mon, 2017-12-04 12:18
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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87 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
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89 by rmoretti
Tue, 2018-01-30 07:20
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
89 by smlewis
Mon, 2017-11-13 10:43
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
92 by hzhekova
Tue, 2018-01-16 10:31
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
95 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
97 by rmoretti
Tue, 2017-10-17 09:03
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
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99 by kamau
Wed, 2017-12-13 14:31
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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111 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
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122 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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125 by sn
Thu, 2017-10-05 17:07
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
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127 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
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130 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
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132 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
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138 by rmoretti
Tue, 2017-10-10 10:08
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
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145 by smlewis
Sat, 2017-12-23 15:56
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
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152 by smlewis
Wed, 2017-12-13 09:54
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
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171 by dyu
Thu, 2017-09-28 18:54
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
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184 by rmoretti
Thu, 2017-08-03 09:29
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
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197 by rmoretti
Fri, 2017-12-01 12:05
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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197 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
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198 by cdegut
Fri, 2017-11-03 05:50
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
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202 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
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202 by Loki01
Thu, 2018-02-15 13:54
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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223 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
224 by smlewis
Tue, 2017-08-15 23:19
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
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225 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
228 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
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240 by staciekim
Thu, 2017-08-17 17:06
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
243 by rmoretti
Tue, 2017-10-10 10:05
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
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244 by fradom
Tue, 2017-12-05 01:52
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
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250 by smlewis
Thu, 2017-06-22 13:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
250 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
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254 by rmoretti
Fri, 2017-04-21 07:41
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
255 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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257 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
260 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
262 by rmoretti
Mon, 2017-05-15 08:54
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
270 by rmoretti
Tue, 2017-10-10 09:58
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
274 by rmoretti
Fri, 2017-03-24 13:39
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
278 by smlewis
Fri, 2017-06-16 07:35
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
287 by rmoretti
Thu, 2017-04-27 07:10
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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288 by ac.research
Mon, 2017-01-09 00:59
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
290 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
291 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
299 by smlewis
Thu, 2017-02-09 21:50
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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313 by alex
Sun, 2017-02-19 08:12
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
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314 by jessye
Fri, 2017-11-03 20:15
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
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323 by smlewis
Tue, 2017-02-21 07:58
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
335 by brspurri
Sat, 2017-08-26 07:08
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
338 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
342 by smlewis
Mon, 2017-02-06 06:57
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
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355 by everyday847
Wed, 2017-05-17 20:03
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
359 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
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371 by sn
Thu, 2017-04-20 21:43
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
372 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
372 by brspurri
Thu, 2017-06-01 10:58
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
374 by smlewis
Tue, 2017-02-21 14:10
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
392 by brspurri
Mon, 2017-05-15 11:48
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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392 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
398 by rmoretti
Thu, 2017-04-20 13:57
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
399 by jrporter
Wed, 2017-07-05 06:30
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
404 by rmoretti
Mon, 2017-09-04 10:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
404 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
408 by smlewis
Mon, 2017-02-06 20:46
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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410 by achambe
Mon, 2016-01-04 11:26
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
413 by rmoretti
Thu, 2017-08-24 08:19
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
413 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
0
418 by brspurri
Wed, 2017-03-29 13:19
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
423 by subha
Fri, 2017-06-09 15:42
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
423 by cdbahl
Sat, 2017-02-18 13:02
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
427 by aaj
Fri, 2016-02-26 08:40
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
430 by smlewis
Fri, 2016-12-23 07:04
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
433 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
445 by smlewis
Thu, 2016-12-08 15:50
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
457 by David Weis
Mon, 2017-03-13 06:40
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
459 by smlewis
Fri, 2017-01-27 07:20
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
462 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
468 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
476 by Sandy
Tue, 2016-05-31 18:48
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
478 by Denise
Thu, 2017-06-15 04:26
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
479 by smlewis
Fri, 2016-11-11 08:33
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
479 by rmoretti
Tue, 2017-03-28 08:51
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
487 by bogac
Tue, 2017-03-07 02:11
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
489 by yigallah
Mon, 2014-12-15 08:46

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