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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,844 by admin
Fri, 2015-09-04 16:17
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
16 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic Enzyme Design FlexBB Protocol Bug/Fix: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
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23 by kettner
Fri, 2019-06-14 14:29
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
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24 by orionshih
Thu, 2019-06-13 02:30
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
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24 by asbelx
Mon, 2019-06-10 07:53
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
2
28 by asbelx
Sat, 2019-06-08 17:03
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
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28 by hzhekova
Mon, 2019-06-10 14:22
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
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40 by jharamesh
Sun, 2019-05-26 19:34
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
45 by vmulligan
Thu, 2019-06-13 14:59
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
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52 by ValentinaSora
Mon, 2019-05-20 05:59
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
54 by vmulligan
Thu, 2019-06-13 15:01
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
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57 by Negarsardar
Wed, 2019-05-15 12:01
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
66 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
68 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
76 by nannemdp
Thu, 2019-04-25 07:58
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
76 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
79 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
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82 by johnnytam100
Wed, 2019-04-10 02:58
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
83 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
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87 by MNP1986
Mon, 2019-03-25 07:53
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
92 by ajasja
Wed, 2019-05-15 15:40
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
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93 by mainzer
Fri, 2019-04-12 01:35
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
97 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
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99 by rmoretti
Tue, 2019-04-16 11:07
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
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101 by rmoretti
Thu, 2019-05-09 15:40
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
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102 by engand93
Wed, 2019-03-27 02:43
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
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107 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
1
108 by rmoretti
Fri, 2019-03-29 10:11
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
111 by Corvin
Wed, 2019-06-12 00:04
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
111 by rmoretti
Fri, 2019-03-29 09:58
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
116 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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139 by sizhang
Wed, 2018-12-05 15:22
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
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142 by rmoretti
Fri, 2019-03-29 12:44
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
147 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
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149 by ylwang
Sun, 2018-11-18 17:51
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
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151 by ksy141
Mon, 2019-01-21 17:21
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
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163 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
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164 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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166 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
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166 by mbakalar
Fri, 2018-08-31 13:06
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
167 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
167 by rmoretti
Fri, 2019-03-29 13:21
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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170 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
1
173 by rmoretti
Fri, 2019-03-29 13:06
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
173 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
175 by rmoretti
Wed, 2018-11-21 15:10
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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178 by dhirajks
Thu, 2018-12-13 19:34
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
181 by rmoretti
Tue, 2018-12-04 08:55
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
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191 by everyday847
Fri, 2019-03-29 13:13
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
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202 by cossio
Thu, 2018-10-11 14:42
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
212 by rmoretti
Wed, 2018-11-21 15:31
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
216 by rmoretti
Fri, 2019-03-29 12:25
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
218 by rmoretti
Fri, 2018-11-23 07:59
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
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223 by smlewis
Fri, 2018-07-27 13:32
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
2
225 by vmulligan
Fri, 2019-05-17 16:15
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
227 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
231 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
231 by enmirts
Wed, 2018-03-28 10:34
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
2
232 by karenjgonzalez
Fri, 2019-05-31 07:18
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
235 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
238 by rmoretti
Fri, 2019-03-29 09:30
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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238 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
241 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
242 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
243 by rmoretti
Fri, 2018-08-03 08:16
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
249 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
251 by esozdemir
Thu, 2019-06-13 12:19
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
255 by rmoretti
Wed, 2018-11-21 15:40
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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264 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
266 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
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278 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
288 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
294 by smlewis
Wed, 2018-12-12 16:51
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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297 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
300 by tsztain
Mon, 2019-02-18 09:55
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
305 by smlewis
Mon, 2018-10-15 08:42
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
305 by rmoretti
Fri, 2018-08-03 08:26
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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306 by Neeraj
Wed, 2018-01-03 02:24
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
306 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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307 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
308 by asbelx
Fri, 2018-04-20 03:33
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
311 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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312 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
318 by jlapin
Wed, 2018-08-01 07:15
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
318 by cossio
Fri, 2018-10-12 04:43
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
0
322 by amorin
Thu, 2018-09-06 11:10
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
323 by sn
Thu, 2017-10-05 17:07
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
332 by rmoretti
Tue, 2018-04-10 15:34
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
340 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
347 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
350 by smlewis
Fri, 2018-09-14 10:34
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
365 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
367 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
374 by purvi24
Mon, 2019-03-11 06:43
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
395 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
397 by rmoretti
Mon, 2018-01-15 16:07
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
402 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
403 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
408 by smlewis
Mon, 2018-05-07 11:42
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
411 by a-eatemadi@razi...
Mon, 2017-12-04 23:52

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