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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,457 by admin
Fri, 2015-09-04 16:17
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
21 by smlewis
Mon, 2017-11-13 10:43
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
24 by a-eatemadi@razi...
Wed, 2017-11-15 04:19
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
31 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
5
37 by nawsad
Tue, 2017-11-21 08:59
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
42 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
43 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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59 by sn
Thu, 2017-10-05 17:07
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
60 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
63 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
73 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
88 by cdegut
Fri, 2017-11-03 05:50
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
94 by dyu
Thu, 2017-09-28 18:54
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
102 by rmoretti
Thu, 2017-08-03 09:29
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
112 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
113 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
124 by rmoretti
Tue, 2017-10-10 10:05
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
134 by rmoretti
Tue, 2017-10-10 09:58
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
137 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
138 by staciekim
Thu, 2017-08-17 17:06
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
143 by jessye
Fri, 2017-11-03 20:15
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
146 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
149 by smlewis
Tue, 2017-08-15 23:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
161 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
163 by smlewis
Thu, 2017-06-22 13:31
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
177 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
179 by smlewis
Fri, 2017-06-16 07:35
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
179 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
186 by brspurri
Sat, 2017-08-26 07:08
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
187 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
188 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
189 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
193 by rmoretti
Mon, 2017-05-15 08:54
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
197 by rmoretti
Thu, 2017-04-27 07:10
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
201 by rmoretti
Fri, 2017-03-24 13:39
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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209 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
217 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
227 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
227 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
230 by smlewis
Thu, 2017-02-09 21:50
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
231 by rmoretti
Mon, 2017-09-04 10:10
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
235 by ac.research
Mon, 2017-01-09 00:59
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
242 by alex
Sun, 2017-02-19 08:12
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
242 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
244 by brspurri
Thu, 2017-06-01 10:58
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
250 by everyday847
Wed, 2017-05-17 20:03
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
254 by jrporter
Wed, 2017-07-05 06:30
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
258 by smlewis
Tue, 2017-02-21 07:58
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
265 by smlewis
Mon, 2017-02-06 06:57
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
279 by sn
Thu, 2017-04-20 21:43
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
284 by brspurri
Mon, 2017-05-15 11:48
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
289 by subha
Fri, 2017-06-09 15:42
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
302 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
306 by smlewis
Tue, 2017-02-21 14:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
310 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
311 by rmoretti
Thu, 2017-04-20 13:57
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
0
319 by brspurri
Wed, 2017-03-29 13:19
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
322 by smlewis
Tue, 2017-07-11 07:53
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
331 by rmoretti
Mon, 2017-03-13 08:01
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
338 by rmoretti
Wed, 2017-01-11 13:00
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
339 by Denise
Thu, 2017-06-15 04:26
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
339 by smlewis
Mon, 2017-02-06 20:46
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
340 by David Weis
Mon, 2017-03-13 06:40
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
345 by felipet
Fri, 2017-06-16 11:42
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
346 by cdbahl
Sat, 2017-02-18 13:02
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
348 by smlewis
Fri, 2016-12-23 07:04
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
354 by rmoretti
Tue, 2017-03-28 08:51
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
359 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
361 by smlewis
Thu, 2016-12-08 15:50
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
366 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
372 by smlewis
Fri, 2017-01-27 07:20
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
372 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
372 by achambe
Mon, 2016-01-04 11:26
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
373 by dkozuch
Sat, 2017-09-09 08:51
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
379 by rmoretti
Thu, 2017-04-20 13:59
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
382 by bogac
Tue, 2017-03-07 02:11
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
390 by sn
Mon, 2017-03-06 10:03
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
393 by aaj
Fri, 2016-02-26 08:40
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
393 by rmoretti
Tue, 2017-07-18 09:00
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
400 by smlewis
Fri, 2016-11-11 08:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
407 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
411 by MJG
Tue, 2017-04-04 23:59
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
412 by Sandy
Tue, 2016-05-31 18:48
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
414 by brspurri
Fri, 2017-03-24 11:35
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
424 by msardejani
Mon, 2016-12-12 17:48
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
425 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
439 by ashu4487
Sun, 2016-12-11 19:03
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
447 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
447 by smlewis
Tue, 2017-07-04 15:42
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
447 by smlewis
Wed, 2016-03-09 04:11
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
449 by bp
Thu, 2016-12-22 07:54
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
450 by yigallah
Mon, 2014-12-15 08:46
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
454 by Derek
Wed, 2016-04-27 01:31
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
456 by smlewis
Mon, 2017-01-23 06:26
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
457 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
457 by sjyang7
Sat, 2017-06-03 06:09
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
460 by rmoretti
Fri, 2016-06-17 10:24
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
463 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
465 by rmoretti
Mon, 2016-09-05 11:29
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
475 by jhm13c
Thu, 2017-03-02 12:01

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