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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,298 |
by admin Fri, 2015-09-04 16:17 |
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Match Application Error: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed by Payne » Sun, 2024-03-24 07:26 |
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28 |
by Payne Sun, 2024-03-24 07:26 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:48 |
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76 |
by JSK Tue, 2024-03-19 09:21 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
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81 |
by rmoretti Mon, 2024-03-18 08:55 |
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Error Run Blueprint File by ileanexis » Thu, 2024-03-07 10:28 |
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87 |
by ileanexis Thu, 2024-03-07 10:28 |
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Stub Libraries for DockWithHotspotMover by ayush_patel » Sat, 2024-03-09 22:43 |
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90 |
by ayush_patel Sat, 2024-03-09 22:43 |
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Creation of crystal_complex.pdb for docking by HBenson » Mon, 2024-03-11 08:57 |
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108 |
by HBenson Mon, 2024-03-11 08:57 |
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Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
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121 |
by mandar Tue, 2024-03-12 23:07 |
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How to use rewrite_rosetta_script.py to update XML script file? by intomybioverse » Fri, 2024-03-15 06:44 |
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123 |
by intomybioverse Sun, 2024-03-17 06:22 |
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several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
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126 |
by lluoto Tue, 2024-03-19 05:28 |
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How to debug the XML script file? by intomybioverse » Wed, 2024-03-06 06:32 |
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144 |
by rmoretti Wed, 2024-03-06 06:51 |
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Deciding -nstruct for RNA FARFAR2 by mandar » Thu, 2024-03-07 22:16 |
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160 |
by mandar Thu, 2024-03-14 22:25 |
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'Use_filters true' option - failure of AbInitio Relax application by Corvin » Wed, 2023-11-08 06:34 |
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194 |
by Corvin Wed, 2023-11-08 06:34 |
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Inquiry about MPI-Rosetta: Issue with -nstruct Parameter by serena » Wed, 2024-01-24 00:59 |
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210 |
by rmoretti Wed, 2024-01-24 08:46 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
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223 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap) by Seongsung » Fri, 2023-11-24 05:09 |
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230 |
by Seongsung Fri, 2023-11-24 13:14 |
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BridgeChains mover deletes residues at break by kmj » Thu, 2024-02-22 12:14 |
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231 |
by kmj Thu, 2024-02-22 12:14 |
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Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
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240 |
by uka147 Thu, 2023-11-09 01:36 |
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Broken structure of local docking of replicadock2 by Jun » Thu, 2023-12-28 00:26 |
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241 |
by Jun Thu, 2023-12-28 00:26 |
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the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
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265 |
by rmoretti Thu, 2024-01-11 14:39 |
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PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
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284 |
by Skelly Tue, 2024-01-30 14:08 |
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Errors about rifdock step 15 by ng98 » Thu, 2024-02-01 17:41 |
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286 |
by ng98 Thu, 2024-02-01 17:41 |
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Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
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294 |
by ramon-arg Mon, 2023-07-24 17:56 |
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Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
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297 |
by Corvin Thu, 2023-07-13 05:30 |
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How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
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300 |
by franz72 Sun, 2023-08-06 10:10 |
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nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
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300 |
by lei Wed, 2023-11-22 06:23 |
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I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi by Edward » Sat, 2023-11-25 04:58 |
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326 |
by Edward Sat, 2023-11-25 05:17 |
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analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
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331 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
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Error about rifdocking step 15 by ng98 » Sun, 2024-01-21 16:30 |
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366 |
by ng98 Tue, 2024-01-23 17:01 |
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Silent File Scores Missing: RNA Protein Complex Predition by axio23 » Fri, 2023-06-16 05:45 |
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369 |
by axio23 Fri, 2023-06-16 05:45 |
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Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
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374 |
by ng98 Tue, 2024-01-09 23:42 |
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Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
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380 |
by vijay.anand Tue, 2023-06-20 12:08 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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398 |
by rmoretti Thu, 2023-07-20 10:08 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
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398 |
by top-gun98 Wed, 2023-06-07 17:19 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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398 |
by rmoretti Tue, 2023-08-29 20:13 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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424 |
by skorro Fri, 2023-07-28 12:20 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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438 |
by jadolfbr Mon, 2023-07-10 09:05 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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443 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Memory Leak: Relax Density MPI RAM overusage kills process by mmfarrugia » Sun, 2023-12-31 12:02 |
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445 |
by mmfarrugia Fri, 2024-01-12 10:35 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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453 |
by Ken Tue, 2023-05-09 08:52 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
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478 |
by lluoto Wed, 2024-02-21 17:39 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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491 |
by rmoretti Fri, 2023-05-05 13:44 |
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rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
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503 |
by ramon-arg Fri, 2023-07-14 07:47 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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512 |
by lei Wed, 2023-09-13 19:35 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
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519 |
by kameisel Wed, 2023-09-13 02:16 |
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dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
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523 |
by almeida85 Tue, 2023-05-16 01:02 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
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547 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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558 |
by rmoretti Wed, 2023-06-28 12:36 |
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Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
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565 |
by uka147 Mon, 2023-10-30 01:53 |
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Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
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567 |
by Seongsung Fri, 2023-11-24 04:52 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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584 |
by almeida85 Tue, 2023-05-16 01:00 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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669 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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669 |
by almeida85 Tue, 2023-05-23 08:23 |
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Is Biopython required to run pdb_renumber.py? by ljjjxay » Wed, 2023-11-22 20:00 |
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671 |
by ljjjxay Wed, 2023-12-06 19:24 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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708 |
by nrollins Mon, 2021-07-26 14:16 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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708 |
by almeida85 Thu, 2021-02-11 02:56 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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714 |
by ddhoyo Mon, 2021-10-11 06:18 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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723 |
by inorgchem Tue, 2020-06-16 20:45 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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726 |
by Corvin Wed, 2021-01-13 04:00 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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728 |
by ojmel Mon, 2021-04-12 07:50 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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754 |
by georg Thu, 2021-04-08 09:31 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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754 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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756 |
by Isomerase Mon, 2022-03-28 01:19 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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757 |
by nrollins Mon, 2021-07-26 14:29 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
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761 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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763 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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764 |
by code_Monkey Mon, 2021-04-05 10:40 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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766 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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774 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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774 |
by listofdina Mon, 2021-08-02 06:51 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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775 |
by jseco Mon, 2021-03-08 03:40 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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775 |
by DGR95 Fri, 2021-05-14 12:51 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
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783 |
by mrinal Mon, 2023-03-20 15:58 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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789 |
by Roberto Thu, 2022-08-04 07:11 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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794 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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801 |
by sam_dc Sat, 2021-10-09 05:38 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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803 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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805 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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805 |
by Ken Mon, 2022-03-14 15:14 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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813 |
by Kazu Wed, 2020-05-20 08:49 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
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815 |
by zmfowler Thu, 2022-07-14 05:34 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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817 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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822 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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823 |
by martongadanecz Wed, 2022-08-03 01:05 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
829 |
by rmoretti Mon, 2023-05-08 13:14 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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829 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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829 |
by rohi Fri, 2020-07-03 22:20 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
0 |
832 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
833 |
by almeida85 Thu, 2022-09-08 06:54 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
836 |
by Roberto Thu, 2022-08-04 07:22 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
839 |
by Soler Wed, 2020-09-16 19:08 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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840 |
by SWM Fri, 2020-01-24 11:22 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
844 |
by Soler Sun, 2021-11-21 22:20 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
853 |
by almeida85 Thu, 2022-06-23 05:50 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
0 |
855 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
0 |
855 |
by Poladu Tue, 2021-01-26 07:50 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
858 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
862 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
0 |
867 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
868 |
by kjs1728 Mon, 2022-05-02 21:57 |
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