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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,647 by admin
Fri, 2015-09-04 16:17
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
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30 by rkirchdo
Fri, 2018-08-03 11:01
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
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41 by smlewis
Fri, 2018-07-27 13:32
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
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55 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
59 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
60 by jlapin
Wed, 2018-08-01 07:15
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
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60 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
4
70 by mdeklotz
Fri, 2018-08-03 09:42
Normal topic KofNConstraint used only in the final pose scoring
by allan.ferrari » Sun, 2018-07-08 18:18
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74 by allan.ferrari
Sat, 2018-08-04 00:39
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
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89 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
89 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
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93 by smlewis
Wed, 2018-08-08 15:48
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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94 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
98 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
99 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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101 by enmirts
Wed, 2018-03-28 10:34
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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104 by evo_umich
Mon, 2018-04-02 12:13
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
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105 by smlewis
Mon, 2018-05-07 11:42
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
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112 by AJVincelli
Sat, 2018-07-14 13:24
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
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120 by asbelx
Mon, 2018-06-18 22:34
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
125 by rmoretti
Thu, 2018-06-28 12:58
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
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132 by rmoretti
Tue, 2018-04-10 15:34
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
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138 by guffysl
Thu, 2018-07-26 12:19
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
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149 by cossio
Fri, 2018-05-18 09:51
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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151 by asbelx
Fri, 2018-04-20 03:33
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
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155 by tong
Sun, 2018-06-24 23:30
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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164 by sdh_h
Sun, 2017-12-17 06:07
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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167 by Neeraj
Wed, 2018-01-03 02:24
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
175 by rmoretti
Thu, 2018-06-28 12:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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177 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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181 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
187 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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190 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
194 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
200 by rmoretti
Mon, 2018-01-15 16:07
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
201 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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208 by sn
Thu, 2017-10-05 17:07
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
213 by subha
Fri, 2018-04-20 12:49
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
214 by rmoretti
Tue, 2018-01-16 07:24
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
218 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
218 by rmoretti
Tue, 2017-10-17 09:03
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
221 by smlewis
Mon, 2017-12-04 12:18
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
222 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
225 by smlewis
Thu, 2018-06-14 10:26
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
229 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
230 by smlewis
Mon, 2017-11-13 10:43
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
235 by kamau
Wed, 2017-12-13 14:31
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
244 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
248 by Loki01
Thu, 2018-04-12 08:28
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
1
252 by rmoretti
Tue, 2018-01-30 07:35
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
259 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
263 by rmoretti
Tue, 2017-10-10 10:08
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
271 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
279 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
283 by cossio
Sun, 2018-03-11 09:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
311 by shadrinams
Wed, 2018-03-14 07:46
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
315 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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318 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
329 by rmoretti
Thu, 2017-08-03 09:29
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
337 by dyu
Thu, 2017-09-28 18:54
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
350 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
361 by ac.research
Mon, 2017-01-09 00:59
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
363 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
367 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
372 by smlewis
Thu, 2017-02-09 21:50
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
375 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
377 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
377 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
379 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
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381 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
382 by rmoretti
Mon, 2017-05-15 08:54
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
397 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
398 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
398 by rmoretti
Fri, 2017-04-21 07:41
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
408 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
409 by rmoretti
Sat, 2017-04-15 13:30
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
411 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
412 by swarekwood
Fri, 2017-08-25 05:08
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
415 by rmoretti
Thu, 2017-04-27 07:10
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
420 by smlewis
Thu, 2017-06-22 13:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
420 by smlewis
Wed, 2017-12-13 09:54
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
425 by smlewis
Tue, 2017-02-21 07:58
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
431 by alex
Sun, 2017-02-19 08:12
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
442 by smlewis
Mon, 2017-02-06 06:57
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
452 by smlewis
Tue, 2017-08-15 23:19
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
460 by rmoretti
Tue, 2017-10-10 10:05
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
465 by smlewis
Fri, 2017-06-16 07:35
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
465 by achambe
Mon, 2016-01-04 11:26
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
473 by smlewis
Sat, 2017-12-23 15:56
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
489 by aaj
Fri, 2016-02-26 08:40
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
492 by rmoretti
Mon, 2018-03-19 12:12
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
494 by cdegut
Fri, 2017-11-03 05:50
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
496 by staciekim
Thu, 2017-08-17 17:06
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
526 by smlewis
Mon, 2017-02-06 20:46
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
526 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
526 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
527 by rmoretti
Fri, 2017-12-01 12:05
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
530 by smlewis
Thu, 2016-12-08 15:50
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
535 by smlewis
Fri, 2016-12-23 07:04
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
536 by yigallah
Mon, 2014-12-15 08:46

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