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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
1,033 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
590 by rmoretti
Tue, 2017-08-22 09:03
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
464 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
560 by staciekim
Thu, 2017-08-17 17:06
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
519 by smlewis
Tue, 2017-08-15 23:19
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
4,214 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
364 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
1,137 by rmoretti
Tue, 2017-07-18 09:00
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
869 by smlewis
Tue, 2017-07-11 07:53
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
1,572 by rmoretti
Thu, 2017-07-06 13:00
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
735 by jrporter
Wed, 2017-07-05 06:30
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
1,277 by smlewis
Tue, 2017-07-04 15:42
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
415 by rmoretti
Mon, 2017-07-03 09:17
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
874 by SenyorDrew
Fri, 2017-06-30 09:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
2,220 by belousoff
Mon, 2017-06-26 16:46
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
461 by smlewis
Thu, 2017-06-22 13:31
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
2,586 by rmoretti
Tue, 2017-06-20 09:02
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
986 by felipet
Fri, 2017-06-16 11:42
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
497 by smlewis
Fri, 2017-06-16 07:35
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
771 by Denise
Thu, 2017-06-15 04:26
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
2,716 by attesor
Wed, 2017-06-14 07:32
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
18
3,741 by smlewis
Mon, 2017-06-12 06:44
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
748 by subha
Fri, 2017-06-09 15:42
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
1,727 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
1,151 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
716 by brspurri
Thu, 2017-06-01 10:58
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
15,863 by smlewis
Thu, 2017-06-01 10:02
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
396 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
1,233 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
406 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
683 by everyday847
Wed, 2017-05-17 20:03
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
743 by brspurri
Mon, 2017-05-15 11:48
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
604 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
421 by rmoretti
Mon, 2017-05-15 08:54
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
451 by rmoretti
Thu, 2017-04-27 07:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
617 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
426 by rmoretti
Fri, 2017-04-21 07:41
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
631 by sn
Thu, 2017-04-20 21:43
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
861 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
655 by rmoretti
Thu, 2017-04-20 13:57
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
2,406 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
447 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
822 by MJG
Tue, 2017-04-04 23:59
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
0
741 by brspurri
Wed, 2017-03-29 13:19
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
762 by rmoretti
Tue, 2017-03-28 08:51
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
411 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
921 by brspurri
Fri, 2017-03-24 11:35
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
1,076 by attesor
Thu, 2017-03-16 01:21
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
337 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
1,047 by David Weis
Mon, 2017-03-13 10:59
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
589 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
748 by David Weis
Mon, 2017-03-13 06:40
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
744 by bogac
Tue, 2017-03-07 02:11
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
404 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
734 by sn
Mon, 2017-03-06 10:03
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
925 by jhm13c
Thu, 2017-03-02 12:01
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
795 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
583 by smlewis
Tue, 2017-02-21 14:10
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
460 by smlewis
Tue, 2017-02-21 07:58
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
1,204 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
463 by alex
Sun, 2017-02-19 08:12
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
643 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
823 by smlewis
Wed, 2017-02-15 07:43
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
391 by smlewis
Thu, 2017-02-09 21:50
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
554 by smlewis
Mon, 2017-02-06 20:46
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
460 by smlewis
Mon, 2017-02-06 06:57
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
857 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
632 by smlewis
Fri, 2017-01-27 07:20
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
1,472 by rmoretti
Mon, 2017-01-23 08:52
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
785 by smlewis
Mon, 2017-01-23 06:26
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
1,031 by smlewis
Fri, 2017-01-20 08:14
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
1,331 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
558 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
598 by rmoretti
Wed, 2017-01-11 13:00
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
3,266 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
381 by ac.research
Mon, 2017-01-09 00:59
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
565 by smlewis
Fri, 2016-12-23 07:04
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
725 by bp
Thu, 2016-12-22 07:54
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
693 by msardejani
Mon, 2016-12-12 17:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
706 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
552 by smlewis
Thu, 2016-12-08 15:50
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
325 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
650 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
3,029 by cossio
Mon, 2016-11-21 07:56
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
587 by smlewis
Fri, 2016-11-11 08:33
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
684 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
759 by rmoretti
Fri, 2016-10-14 08:42
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
2,086 by msardejani
Sat, 2016-10-01 12:55
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
1,035 by rmoretti
Wed, 2016-09-14 02:05
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
890 by banshee
Mon, 2016-09-12 23:41
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
1,827 by ks
Mon, 2016-09-12 03:14
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
768 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
740 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
897 by rmoretti
Mon, 2016-09-05 11:10
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
1,665 by rmoretti
Mon, 2016-09-05 10:59
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
4,041 by smlewis
Wed, 2016-08-17 07:56
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
824 by aep
Sat, 2016-08-13 13:03
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
905 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
675 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
1,403 by rmoretti
Tue, 2016-07-12 09:41
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