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Rosetta 3 - Applications
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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347 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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58 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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129 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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390 |
by Corvin Mon, 2019-12-02 02:00 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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1,808 |
by kamau Wed, 2014-09-24 11:35 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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414 |
by sdh_h Wed, 2020-03-25 12:43 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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891 |
by fred Wed, 2014-12-03 12:28 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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1,694 |
by fred Mon, 2014-04-21 06:47 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,128 |
by jennifer Wed, 2015-04-08 05:29 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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470 |
by MA Wed, 2018-09-05 00:50 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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984 |
by lanselibai Sat, 2015-01-17 07:57 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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588 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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278 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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313 |
by chrisHKL Thu, 2020-03-05 12:58 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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699 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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276 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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160 |
by aralz Thu, 2021-02-11 00:46 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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449 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
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356 |
by lanselibai Sat, 2020-04-11 02:10 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
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1,468 |
by MajorID Mon, 2014-04-21 06:47 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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369 |
by SWM Fri, 2020-01-24 07:35 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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96 |
by ojmel Mon, 2021-04-12 07:50 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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340 |
by aarono Tue, 2020-06-02 00:13 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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816 |
by ac.research Mon, 2017-01-09 00:59 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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226 |
by inorgchem Tue, 2020-06-16 20:45 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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123 |
by Corvin Wed, 2021-01-13 04:00 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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321 |
by jcampecino Wed, 2020-05-13 12:22 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,214 |
by cossio Mon, 2015-01-19 07:14 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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613 |
by asbelx Fri, 2018-04-20 03:33 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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252 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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134 |
by Poladu Tue, 2021-01-26 07:50 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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1,396 |
by rmoretti Tue, 2014-11-18 09:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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1,882 |
by cdbahl Sat, 2017-02-18 13:02 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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676 |
by rmoretti Fri, 2019-04-05 00:18 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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549 |
by JackMaguire Fri, 2019-11-22 13:45 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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1,827 |
by rmoretti Mon, 2015-05-25 11:30 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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248 |
by rmoretti Sun, 2020-11-08 18:56 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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1,898 |
by smlewis Mon, 2014-04-21 06:47 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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409 |
by cryosky Mon, 2021-03-01 21:37 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
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2,116 |
by smlewis Mon, 2014-04-21 06:47 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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1,699 |
by rmoretti Wed, 2014-12-03 19:07 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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719 |
by rmoretti Thu, 2019-05-09 15:40 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,275 |
by smlewis Mon, 2015-06-08 06:35 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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1,481 |
by rmoretti Fri, 2016-10-14 08:42 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,076 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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987 |
by AJVincelli Sun, 2018-11-25 11:29 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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907 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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509 |
by danpf Fri, 2020-02-21 18:23 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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797 |
by rmoretti Tue, 2017-10-17 09:03 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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955 |
by jeliazkov Fri, 2018-12-07 12:51 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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446 |
by nannemdp Sun, 2020-06-07 08:01 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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579 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,129 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,255 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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677 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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1,916 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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1,751 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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1,934 |
by smlewis Mon, 2014-04-21 06:48 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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2,695 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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1,618 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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1,468 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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688 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,506 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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685 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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431 |
by danpf Sun, 2020-08-30 22:23 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,316 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,078 |
by smlewis Mon, 2017-02-06 06:57 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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1,942 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,510 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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372 |
by brspurri Wed, 2021-01-20 08:11 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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669 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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228 |
by rmoretti Fri, 2020-11-27 10:47 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,185 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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994 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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980 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
618 |
by bjharris Wed, 2020-07-01 23:25 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
3,132 |
by rmoretti Mon, 2014-04-21 06:47 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
1 |
1,113 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
474 |
by matteoferla Thu, 2020-07-02 07:27 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,088 |
by smlewis Mon, 2014-04-21 06:47 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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464 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,013 |
by rmoretti Mon, 2014-04-21 06:48 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,122 |
by rmoretti Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
1 |
1,043 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
650 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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506 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
1 |
1,106 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
1 |
1,228 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
1 |
585 |
by smlewis Tue, 2019-09-24 12:43 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
695 |
by smlewis Fri, 2018-07-27 13:32 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
1,544 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
513 |
by everyday847 Fri, 2019-08-23 04:08 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,081 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
3,463 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
90 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
2,668 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
1,781 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
918 |
by kamau Wed, 2017-12-13 14:31 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
687 |
by rmoretti Fri, 2019-03-29 09:45 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
1,506 |
by rmoretti Mon, 2015-05-25 12:30 |
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