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Rosetta 3 - Applications
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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164 |
by jlawrie Tue, 2020-09-15 12:52 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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489 |
by enmirts Wed, 2018-03-28 10:34 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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497 |
by dhirajks Thu, 2018-12-13 19:34 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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71 |
by rohi Mon, 2021-01-11 13:58 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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886 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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164 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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204 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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1,246 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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318 |
by wentlewi Fri, 2020-03-13 03:24 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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841 |
by daniloboskovic Fri, 2019-11-08 08:27 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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167 |
by mxp Tue, 2020-07-07 01:21 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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193 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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380 |
by Ruska322 Sat, 2019-09-07 05:21 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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655 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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555 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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201 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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591 |
by evo_umich Mon, 2018-04-02 12:13 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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377 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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258 |
by benhardy Wed, 2020-09-30 08:42 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,078 |
by shaunmk Mon, 2015-04-27 02:33 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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221 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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203 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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1,691 |
by smlewis Mon, 2014-04-21 06:47 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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1,760 |
by rmoretti Mon, 2014-04-21 06:48 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,253 |
by rmoretti Fri, 2016-09-09 07:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,324 |
by Pernille Fri, 2014-06-20 00:17 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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1,763 |
by everyday847 Wed, 2017-05-17 20:03 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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219 |
by rmoretti Mon, 2020-09-14 06:36 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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1,799 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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2,445 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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562 |
by danpf Fri, 2020-02-21 18:37 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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388 |
by rmoretti Fri, 2020-07-10 09:59 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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887 |
by rmoretti Mon, 2017-03-06 12:39 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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579 |
by rmoretti Tue, 2019-04-16 11:07 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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932 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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416 |
by smlewis Mon, 2019-09-16 12:22 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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1,898 |
by nawsad Mon, 2014-04-21 06:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,559 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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1,796 |
by rmoretti Wed, 2015-03-25 11:33 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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2,559 |
by smlewis Mon, 2014-04-21 06:47 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,321 |
by rmoretti Tue, 2015-11-24 16:16 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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2,253 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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684 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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204 |
by leygkn Tue, 2020-09-22 22:46 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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1,710 |
by rmoretti Fri, 2014-08-15 08:06 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,014 |
by rmoretti Mon, 2017-07-03 09:17 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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190 |
by rmoretti Wed, 2020-10-14 08:25 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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2,272 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
1 |
2,093 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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704 |
by rmoretti Tue, 2018-04-10 15:29 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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713 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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477 |
by danpf Wed, 2019-10-16 13:03 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
2,137 |
by dgront Mon, 2014-04-21 06:47 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
2,647 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,476 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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924 |
by rmoretti Mon, 2019-06-24 13:46 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
1 |
889 |
by smlewis Thu, 2017-02-09 21:50 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,300 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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286 |
by danpf Tue, 2020-07-14 10:27 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
993 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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597 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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112 |
by rmoretti Wed, 2020-12-02 07:27 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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636 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
635 |
by rmoretti Mon, 2019-08-26 12:57 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
1,994 |
by rmoretti Mon, 2014-04-21 06:47 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,048 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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891 |
by rmoretti Tue, 2017-10-10 09:54 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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1,921 |
by smlewis Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,067 |
by jarod Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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814 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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379 |
by danpf Fri, 2020-02-21 17:05 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
1,342 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
1 |
1,286 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
1 |
1,314 |
by rmoretti Wed, 2017-01-11 13:00 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
1 |
1,086 |
by rmoretti Fri, 2019-03-29 13:06 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
1 |
57 |
by bjharris Fri, 2021-01-22 17:34 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
1,623 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
1 |
1,725 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
1,777 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
818 |
by smlewis Mon, 2018-05-07 11:42 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
1 |
270 |
by ssrb Sun, 2020-09-20 15:50 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
1 |
1,230 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
890 |
by smlewis Mon, 2017-12-04 12:18 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
1 |
1,731 |
by smlewis Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,106 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
596 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
1 |
408 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
304 |
by vmulligan Thu, 2020-05-21 18:33 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
1,683 |
by ytao Mon, 2014-04-21 06:48 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
2,516 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
1,251 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
569 |
by rmoretti Mon, 2019-06-24 13:43 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
1 |
302 |
by rmoretti Sun, 2020-09-06 10:10 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
2,285 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
754 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
618 |
by matteoferla Tue, 2020-08-04 09:30 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
2,439 |
by jadolfbr Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
1,384 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
1,093 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
719 |
by rmoretti Wed, 2019-07-10 09:47 |
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