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Rosetta 3 - Applications

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Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
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347 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
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58 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
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129 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
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390 by Corvin
Mon, 2019-12-02 02:00
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,808 by kamau
Wed, 2014-09-24 11:35
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
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414 by sdh_h
Wed, 2020-03-25 12:43
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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891 by fred
Wed, 2014-12-03 12:28
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,694 by fred
Mon, 2014-04-21 06:47
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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1,128 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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470 by MA
Wed, 2018-09-05 00:50
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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984 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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588 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
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278 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
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313 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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699 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
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276 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
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160 by aralz
Thu, 2021-02-11 00:46
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
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449 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
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356 by lanselibai
Sat, 2020-04-11 02:10
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,468 by MajorID
Mon, 2014-04-21 06:47
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
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369 by SWM
Fri, 2020-01-24 07:35
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
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96 by ojmel
Mon, 2021-04-12 07:50
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
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340 by aarono
Tue, 2020-06-02 00:13
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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816 by ac.research
Mon, 2017-01-09 00:59
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
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226 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
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123 by Corvin
Wed, 2021-01-13 04:00
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
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321 by jcampecino
Wed, 2020-05-13 12:22
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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2,214 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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613 by asbelx
Fri, 2018-04-20 03:33
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
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252 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
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134 by Poladu
Tue, 2021-01-26 07:50
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,396 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
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1,882 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
676 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
549 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
1,827 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
248 by rmoretti
Sun, 2020-11-08 18:56
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
409 by cryosky
Mon, 2021-03-01 21:37
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,116 by smlewis
Mon, 2014-04-21 06:47
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
1,699 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
719 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,275 by smlewis
Mon, 2015-06-08 06:35
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,481 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,076 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
987 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
907 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
509 by danpf
Fri, 2020-02-21 18:23
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
797 by rmoretti
Tue, 2017-10-17 09:03
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
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955 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic The difference between the H1 regions of modeled camelid antibody and the crystal structure.
by Sunyp_IM » Sun, 2020-06-07 02:34
1
446 by nannemdp
Sun, 2020-06-07 08:01
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
579 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,129 by smlewis
Mon, 2014-05-12 08:32
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,255 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
677 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,916 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,934 by smlewis
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,695 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,618 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
1,468 by smlewis
Tue, 2017-08-15 23:19
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
688 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,506 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
685 by rmoretti
Mon, 2019-06-24 14:39
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
431 by danpf
Sun, 2020-08-30 22:23
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,316 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,078 by smlewis
Mon, 2017-02-06 06:57
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,942 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,510 by rmoretti
Fri, 2015-10-02 12:30
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
372 by brspurri
Wed, 2021-01-20 08:11
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
669 by rmoretti
Wed, 2018-11-21 15:10
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
228 by rmoretti
Fri, 2020-11-27 10:47
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,185 by Derek
Wed, 2016-04-27 01:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
994 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
980 by rmoretti
Fri, 2018-08-03 08:26
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
618 by bjharris
Wed, 2020-07-01 23:25
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,132 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,113 by smlewis
Fri, 2016-11-11 08:33
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
474 by matteoferla
Thu, 2020-07-02 07:27
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,088 by smlewis
Mon, 2014-04-21 06:47
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
464 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,013 by rmoretti
Mon, 2014-04-21 06:48
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,122 by rmoretti
Mon, 2014-04-21 06:47
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,043 by rmoretti
Fri, 2017-03-24 13:39
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
650 by rmoretti
Wed, 2019-07-10 09:24
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
506 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,106 by smlewis
Fri, 2016-12-23 07:04
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,228 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
585 by smlewis
Tue, 2019-09-24 12:43
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
695 by smlewis
Fri, 2018-07-27 13:32
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
1,544 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
513 by everyday847
Fri, 2019-08-23 04:08
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,081 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,463 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
90 by vmulligan
Wed, 2021-04-28 12:59
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,668 by rmoretti
Mon, 2014-04-21 06:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,781 by rmoretti
Tue, 2014-11-04 10:33
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
918 by kamau
Wed, 2017-12-13 14:31
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
687 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,506 by rmoretti
Mon, 2015-05-25 12:30
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