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Rosetta 3 - Applications

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Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
2,332 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Comparing a prediction to the native structure and calculate RMSD for RNA
by danwolf_33 » Thu, 2023-02-09 09:32
0
2,065 by danwolf_33
Thu, 2023-02-09 09:34
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
1,070 by wentlewi
Fri, 2020-03-13 03:24
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
965 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
901 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
1,115 by Ruska322
Sat, 2019-09-07 05:21
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
0
1,021 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Protein Protein Docking with Linker
by mrinal » Mon, 2023-03-20 15:58
0
903 by mrinal
Mon, 2023-03-20 15:58
Normal topic Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job
by eyaaaan » Sun, 2022-08-07 22:03
0
969 by eyaaaan
Tue, 2022-08-09 21:59
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
839 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
1,355 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
1,201 by sn
Thu, 2017-10-05 17:07
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
958 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
0
996 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
1,035 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
1,445 by benhardy
Wed, 2020-09-30 08:42
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
1,337 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic Help to understand docking results
by rtorquato » Fri, 2022-11-25 12:05
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1,611 by rtorquato
Fri, 2022-11-25 12:05
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
2,244 by brspurri
Mon, 2014-04-21 06:47
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
1,315 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
0
896 by zmfowler
Thu, 2022-07-14 05:34
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
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938 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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1,730 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
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889 by sam_dc
Sat, 2021-10-09 05:38
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
2,258 by zadie1118
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
933 by brspurri
Fri, 2020-08-28 09:11
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
1,076 by engand93
Wed, 2019-03-27 02:43
Normal topic Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins"
by vitoralmeida1808 » Mon, 2023-11-06 09:43
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365 by vitoralmeida1808
Mon, 2023-11-06 09:43
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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1,530 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
1,039 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
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904 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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1,638 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
0
1,061 by Corvin
Thu, 2020-04-02 00:16
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,823 by Sandy
Tue, 2016-05-31 18:48
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
1,066 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
0
968 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
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1,202 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
1,147 by Corvin
Wed, 2020-12-30 09:21
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
1,112 by memilton
Thu, 2021-12-16 09:09
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
1,080 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
1,051 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
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819 by nrollins
Mon, 2021-07-26 14:16
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
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1,784 by almeida85
Tue, 2022-10-25 02:32
Normal topic PIPER-FlexPepDock [commercial user]
by Skelly » Tue, 2024-01-23 16:14
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427 by Skelly
Tue, 2024-01-30 14:08
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
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984 by ldlamini
Mon, 2021-01-11 07:23
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
0
1,117 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic non-zero ddG of binding even without mutations
by top-gun98 » Wed, 2023-06-07 17:19
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533 by top-gun98
Wed, 2023-06-07 17:19
Normal topic Stub Libraries for DockWithHotspotMover
by ayush_patel » Sat, 2024-03-09 22:43
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218 by ayush_patel
Sat, 2024-03-09 22:43
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
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1,413 by tbelec
Mon, 2022-02-28 12:37
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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2,307 by fred
Mon, 2014-04-21 06:47
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
1,292 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
1,320 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
924 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
774 by almeida85
Thu, 2021-02-11 02:56
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
0
1,039 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
884 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
1,488 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic prepack - residue count fails
by xfradera » Fri, 2023-01-27 06:36
0
1,339 by xfradera
Fri, 2023-01-27 06:36
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,593 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
1,097 by almeida85
Mon, 2020-08-31 07:17
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
1,076 by pwging13
Thu, 2019-12-19 09:53
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,849 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
1,584 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by ldx022 » Thu, 2023-03-16 04:13
0
1,256 by ldx022
Thu, 2023-03-16 04:13
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,544 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,484 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
910 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
830 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
1,062 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
854 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
1,534 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
900 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
744 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
0
976 by almeida85
Thu, 2022-09-08 06:54
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
1,321 by marinok
Mon, 2020-09-28 14:11
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
2,048 by MajorID
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,732 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,600 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,606 by jlawrie
Fri, 2020-08-14 14:09
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
1,117 by sc19
Thu, 2022-07-14 03:40
Normal topic BridgeChains mover deletes residues at break
by kmj » Thu, 2024-02-22 12:14
0
376 by kmj
Thu, 2024-02-22 12:14
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
1,526 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
937 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
0
1,093 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
0
503 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
2,294 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
1,195 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,348 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
945 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
1,070 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
906 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
957 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
0
891 by Ken
Mon, 2022-03-14 15:14
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
1,036 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
0
1,089 by sia
Wed, 2022-04-27 19:59
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,559 by kamau
Wed, 2014-09-24 11:35
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
960 by Corvin
Tue, 2021-11-16 07:22
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
0
2,280 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
1,168 by sdh_h
Wed, 2020-03-25 12:43
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,476 by fred
Wed, 2014-12-03 12:28
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