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Rosetta 3 - Applications
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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7,152 |
by rmoretti Tue, 2015-08-18 16:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
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7,830 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
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7,614 |
by rmoretti Mon, 2014-04-21 06:47 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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7,869 |
by lanselibai Wed, 2014-11-12 11:17 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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6,485 |
by rayyoung Thu, 2021-11-18 10:13 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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6,148 |
by rmoretti Thu, 2017-07-06 13:00 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
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7,813 |
by dimaio Mon, 2014-04-21 06:47 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,214 |
by yels Wed, 2021-03-31 18:31 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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5,447 |
by jessye Fri, 2017-11-03 20:15 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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5,252 |
by dantimatter Wed, 2019-11-06 09:51 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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6,519 |
by matteoferla Mon, 2021-07-19 06:13 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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9,112 |
by helenah Thu, 2020-10-08 05:29 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
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6,093 |
by lzx32 Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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6,210 |
by lanselibai Tue, 2014-11-11 15:28 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
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8,721 |
by rmoretti Fri, 2014-02-07 08:01 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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6,169 |
by rmoretti Thu, 2014-11-20 10:46 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
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7,285 |
by petrikigor Mon, 2014-04-21 06:47 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
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7,589 |
by jarod Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
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8,070 |
by smlewis Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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6,076 |
by Loki01 Thu, 2018-02-15 13:54 |
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Is Biopython required to run pdb_renumber.py? by ljjjxay » Wed, 2023-11-22 20:00 |
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761 |
by ljjjxay Wed, 2023-12-06 19:24 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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10,340 |
by lanselibai Wed, 2014-10-01 02:13 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
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7,725 |
by rmoretti Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
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6,398 |
by eskici Mon, 2014-04-21 06:47 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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4,190 |
by tong Sun, 2018-06-24 23:30 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
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7,925 |
by rmoretti Mon, 2014-04-21 06:48 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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4,200 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
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7,645 |
by skovacs Mon, 2014-04-21 06:47 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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6,573 |
by syoifczeri Sat, 2015-11-07 21:42 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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8,534 |
by rmoretti Wed, 2015-09-02 12:43 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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7,412 |
by rmoretti Wed, 2017-01-11 12:53 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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13,378 |
by rmoretti Fri, 2015-09-11 13:27 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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4,612 |
by rmoretti Fri, 2017-12-01 12:05 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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4,265 |
by chandana Tue, 2022-08-09 20:27 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
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5,885 |
by xfliu Mon, 2014-04-21 06:47 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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8,240 |
by lzx32 Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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6,257 |
by rmoretti Mon, 2014-04-21 06:47 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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6,806 |
by jadolfbr Tue, 2015-04-07 10:50 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
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7,189 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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6,287 |
by msardejani Sat, 2016-10-01 12:55 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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6,299 |
by Corvin Tue, 2019-10-15 01:12 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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4,864 |
by smlewis Wed, 2018-08-08 15:48 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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6,631 |
by lzx32 Mon, 2014-04-21 06:47 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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6,145 |
by smlewis Mon, 2014-04-21 06:47 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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7,220 |
by Marius1987 Fri, 2016-02-05 07:20 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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6,516 |
by tfliu Mon, 2014-04-21 06:48 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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5,998 |
by rmoretti Tue, 2017-07-18 09:00 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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3,441 |
by rmoretti Tue, 2020-07-14 10:54 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,926 |
by rmoretti Mon, 2017-01-23 08:52 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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6,526 |
by franfdez Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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5,000 |
by fradom Tue, 2017-12-05 01:52 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
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1,055 |
by yueyuedake Sun, 2023-07-16 19:17 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
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7,007 |
by Gerdes Fri, 2014-02-07 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,050 |
by ctqwong Thu, 2021-03-18 02:04 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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3,259 |
by jadolfbr Sun, 2020-12-06 17:41 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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1,519 |
by rmoretti Mon, 2023-07-10 08:57 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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7,425 |
by eyong123 Mon, 2015-06-29 04:44 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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7,027 |
by Aben Tue, 2023-04-18 01:31 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
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6,640 |
by yogeshkd Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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5,355 |
by petrikigor Mon, 2014-04-21 06:47 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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3,580 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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6,379 |
by siciliu Thu, 2014-04-10 09:50 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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3,594 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
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7,125 |
by smlewis Mon, 2014-04-21 06:47 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
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6,393 |
by Anonymous Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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5,052 |
by yperez Mon, 2014-04-21 06:47 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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6,382 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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5,018 |
by yzhou Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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5,460 |
by wangyr Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
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9,226 |
by deltag Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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5,155 |
by tsztain Tue, 2018-12-11 13:41 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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6,142 |
by jadolfbr Mon, 2014-04-21 06:48 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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5,072 |
by Anonymous Mon, 2014-04-21 06:47 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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3,465 |
by dantimatter Wed, 2019-10-30 09:43 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
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5,742 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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5,935 |
by felipet Wed, 2015-02-11 05:13 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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5,767 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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5,424 |
by AmelieH Wed, 2014-11-19 11:26 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
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7,068 |
by rmoretti Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,867 |
by rmoretti Mon, 2016-09-05 10:59 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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3,203 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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7,265 |
by rmoretti Tue, 2015-03-31 08:56 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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3,016 |
by brspurri Wed, 2020-06-03 13:20 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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5,656 |
by lanselibai Wed, 2014-10-15 03:52 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
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9,900 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,886 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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3,067 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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3,136 |
by everyday847 Wed, 2020-05-20 08:52 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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5,957 |
by mkoohim Mon, 2014-04-21 06:47 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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3,225 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,777 |
by attesor Wed, 2015-10-21 13:53 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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5,277 |
by rmoretti Thu, 2020-01-30 15:42 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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4,374 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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3,282 |
by smlewis Mon, 2019-09-23 11:42 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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7,068 |
by rmoretti Mon, 2014-04-21 10:47 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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3,291 |
by vmulligan Fri, 2020-04-10 02:54 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
4,438 |
by smlewis Fri, 2017-01-20 08:14 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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6,523 |
by brspurri Mon, 2014-04-21 06:47 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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5,089 |
by rmoretti Thu, 2017-06-01 08:52 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
4,962 |
by rmoretti Mon, 2018-11-12 14:31 |
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