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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
3,150 by eskici
Mon, 2014-04-21 06:47
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
351 by rmoretti
Mon, 2018-01-15 16:14
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
1,941 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
288 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
2,043 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
1,002 by jrporter
Wed, 2017-07-05 06:30
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
3,350 by rmoretti
Tue, 2015-03-31 08:56
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,564 by smlewis
Mon, 2014-05-12 08:32
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
1,870 by kbuhr
Mon, 2016-03-28 01:08
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,397 by smlewis
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
1,689 by smlewis
Tue, 2017-07-04 15:42
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
1,367 by attesor
Thu, 2017-03-16 01:21
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
113 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
626 by fred
Wed, 2014-12-03 12:28
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,443 by nawsad
Mon, 2014-04-21 06:48
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,000 by aaj
Wed, 2016-02-24 07:37
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,063 by rmoretti
Mon, 2014-05-26 09:29
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,046 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
3,991 by petrikigor
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
3,498 by Marius1987
Fri, 2016-02-05 07:20
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,120 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
23,504 by jfeuva
Tue, 2014-12-09 14:49
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
896 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
229 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
6,716 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
154 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
2,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
2,196 by jarod
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
1,854 by yperez
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
2,031 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
1,981 by smlewis
Fri, 2014-03-07 13:02
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
2,526 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
2,455 by rmoretti
Wed, 2014-07-02 16:55
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
290 by asbelx
Fri, 2018-04-20 03:33
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,043 by rmoretti
Fri, 2015-10-02 12:30
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
3,280 by afmo
Thu, 2014-05-22 01:19
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
636 by shadrinams
Wed, 2018-03-14 07:46
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
2,124 by yperez
Mon, 2014-04-21 06:47
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
1,101 by rmoretti
Mon, 2018-03-19 12:12
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
7,357 by rmoretti
Thu, 2016-04-28 16:43
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
5,650 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
973 by rmoretti
Tue, 2015-01-13 07:44
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
1,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
3,202 by lanselibai
Sun, 2015-03-01 15:00
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
711 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
803 by rmoretti
Wed, 2016-11-30 07:46
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
3,398 by rmoretti
Thu, 2015-04-16 11:23
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
1,610 by smlewis
Mon, 2016-05-02 08:20
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
1,366 by dee2711453
Fri, 2016-03-11 21:32
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
0
71 by MNP1986
Mon, 2019-03-25 07:53
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
3,570 by rmoretti
Mon, 2014-04-21 06:47
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
6,190 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
131 by ylwang
Sun, 2018-11-18 17:51
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,267 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
660 by smlewis
Thu, 2016-12-08 15:50
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
1,581 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
892 by rmoretti
Wed, 2016-02-24 14:39
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
1,381 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
1,680 by cossio
Tue, 2015-01-20 06:40
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
1,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
3,681 by IAndre
Mon, 2014-04-21 06:47
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
2,415 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
3,500 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
2,544 by zcrook
Tue, 2014-11-25 10:27
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,357 by zadie1118
Mon, 2014-04-21 06:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
1,781 by fred
Mon, 2014-04-21 06:48
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
316 by sn
Thu, 2017-10-05 17:07
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
5,922 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
2,306 by AmelieH
Wed, 2014-11-19 11:26
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
2,729 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
1,040 by smlewis
Wed, 2017-02-15 07:43
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
1,652 by rmoretti
Mon, 2014-08-04 14:51
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
159 by rmoretti
Tue, 2018-12-04 08:55
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
1,108 by MJG
Tue, 2017-04-04 23:59
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
566 by smlewis
Tue, 2017-02-21 07:58
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
705 by msk
Tue, 2014-06-03 11:09
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
1,814 by rosend
Tue, 2015-11-17 12:12
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
2,876 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
1
91 by rmoretti
Fri, 2019-03-29 10:11
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
0
150 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
1,208 by rmoretti
Fri, 2015-01-02 09:43
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
2,468 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
4,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
1,339 by mintseris
Wed, 2015-06-24 22:04
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
959 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
2,578 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
1,582 by lanselibai
Tue, 2015-01-13 14:25
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
676 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
1,348 by felipet
Fri, 2017-06-16 11:42
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
4,508 by smlewis
Mon, 2014-04-21 06:47
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
441 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
959 by David Weis
Mon, 2017-03-13 06:40
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
3,996 by protos_heis
Mon, 2015-06-08 07:00
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
1,611 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
3,414 by eyong123
Mon, 2015-06-29 04:44
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,081 by eyong123
Wed, 2015-04-22 11:33
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
2,888 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
849 by rmoretti
Fri, 2016-04-08 07:39
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
2,012 by petrikigor
Mon, 2014-04-21 06:47
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