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Rosetta 3 - Applications

Topic / Topic startersort ascending Replies Views Last post
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
3,666 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
829 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
4,482 by Anpu
Tue, 2018-09-25 19:06
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,538 by smlewis
Mon, 2014-04-21 06:47
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
4,371 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
381 by jlawrie
Thu, 2020-08-20 11:00
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,790 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
848 by maruhuang
Thu, 2019-09-26 18:52
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
430 by MA
Wed, 2018-09-05 00:50
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
2,664 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
1
316 by ssrb
Sun, 2020-09-20 15:50
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,604 by ast
Mon, 2014-04-21 06:48
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,038 by brianmlee
Mon, 2014-11-24 19:40
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
1,497 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
4,432 by smlewis
Mon, 2014-04-21 06:47
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
850 by rmoretti
Tue, 2018-04-10 15:34
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,057 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
879 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,473 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,577 by jrcf
Mon, 2016-02-15 17:59
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,252 by lanselibai
Tue, 2014-09-30 02:28
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
17,301 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,319 by smlewis
Fri, 2017-01-20 08:14
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
922 by smlewis
Thu, 2017-02-09 21:50
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
3,367 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,017 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
2,788 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
11,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,187 by brspurri
Fri, 2017-03-24 11:35
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
213 by Kazu
Wed, 2020-05-20 08:49
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
1,839 by smlewis
Wed, 2017-12-13 09:54
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,327 by rmoretti
Mon, 2015-05-25 12:37
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
5,475 by cossio
Mon, 2016-11-21 07:56
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
2,937 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
3,622 by fede
Wed, 2020-09-23 11:24
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
935 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,289 by ast
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
1,521 by subha
Fri, 2018-04-20 12:49
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,196 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
1,557 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
773 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
5,217 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
1,755 by Corvin
Tue, 2020-11-10 01:22
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
2,351 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
362 by CATarr
Wed, 2019-10-09 19:05
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
51 by almeida85
Thu, 2021-02-11 02:56
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
515 by enmirts
Wed, 2018-03-28 10:34
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,396 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
9,199 by rmoretti
Thu, 2014-04-24 14:43
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
3,735 by rmoretti
Thu, 2014-11-20 10:46
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,176 by rmoretti
Tue, 2016-07-12 09:05
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
539 by Astghik
Thu, 2020-10-15 00:48
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
410 by almeida85
Wed, 2020-09-02 06:14
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
227 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
3,792 by fred
Tue, 2014-04-01 08:24
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
2,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
984 by rmoretti
Fri, 2017-03-24 13:39
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,738 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
3,965 by weitzner
Mon, 2014-04-21 06:47
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
273 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,238 by rmoretti
Fri, 2015-01-02 11:06
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,470 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,463 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
620 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,378 by fukamitka
Mon, 2014-04-21 06:47
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,192 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,467 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,360 by weehee
Mon, 2014-04-21 06:47
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
4
2,496 by Morrian_Lynn
Thu, 2020-03-05 10:07
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
1,787 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
8,357 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
11,714 by grisha
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
3,877 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,466 by mtyras
Mon, 2015-06-08 03:18
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,121 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,068 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
605 by rmoretti
Mon, 2019-06-24 13:43
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
1,608 by bjharris
Sun, 2020-08-23 14:03
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
6,058 by rmoretti
Fri, 2014-02-07 08:01
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
4,642 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,059 by mpacella
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
1,763 by Yero
Thu, 2019-07-18 01:39
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
240 by zdaw
Tue, 2020-12-15 15:38
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,587 by rmoretti
Fri, 2016-04-29 08:26
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
2,790 by jtmacd
Fri, 2015-12-04 03:11
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
575 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
856 by kamau
Wed, 2017-12-13 14:31
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,071 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,416 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,037 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,296 by rmoretti
Fri, 2016-10-14 08:56
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,347 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
685 by rmoretti
Mon, 2019-08-26 12:57
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,726 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,969 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,147 by rmoretti
Tue, 2018-01-16 07:24
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
4,325 by Gerdes
Fri, 2014-02-07 06:48
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
8,670 by joeg
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
6,118 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
835 by xingqing326
Tue, 2020-04-21 19:11
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