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Rosetta 3 - Applications
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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by Nicole Deng Fri, 2020-12-18 00:28 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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368 |
by SWM Fri, 2020-01-24 07:35 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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368 |
by brspurri Wed, 2021-01-20 08:11 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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370 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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370 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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by zdaw Tue, 2020-12-15 15:38 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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by Nicole Deng Thu, 2020-11-05 03:04 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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by wentlewi Fri, 2020-03-13 03:24 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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388 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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388 |
by everyday847 Wed, 2020-12-09 21:46 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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390 |
by Corvin Mon, 2019-12-02 02:00 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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396 |
by vmulligan Thu, 2020-05-21 18:33 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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398 |
by danpf Tue, 2020-07-14 10:27 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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399 |
by ssrb Sun, 2020-09-20 15:50 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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399 |
by CATarr Wed, 2019-10-09 19:05 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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400 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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400 |
by jlawrie Fri, 2020-08-14 14:09 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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400 |
by benhardy Thu, 2020-05-28 08:45 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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407 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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407 |
by cryosky Mon, 2021-03-01 21:37 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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407 |
by Genta Tue, 2019-10-29 18:46 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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409 |
by He Xiao Sun, 2021-04-11 19:29 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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410 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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410 |
by pwging13 Thu, 2019-12-19 09:53 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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413 |
by ksteczk Sat, 2020-04-11 11:23 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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by matteoferla Mon, 2020-05-04 02:02 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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by sdh_h Wed, 2020-03-25 12:43 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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421 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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430 |
by danpf Sun, 2020-08-30 22:23 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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439 |
by benhardy Wed, 2020-09-30 08:42 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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442 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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by nannemdp Sun, 2020-06-07 08:01 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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by aloshbau Mon, 2021-03-01 20:06 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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447 |
by rmoretti Wed, 2020-09-16 22:11 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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448 |
by engand93 Wed, 2019-03-27 02:43 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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448 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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by Ruska322 Sat, 2019-09-07 05:21 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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451 |
by rmoretti Wed, 2020-03-04 09:56 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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452 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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460 |
by danpf Fri, 2020-02-21 17:05 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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460 |
by matteoferla Mon, 2020-05-04 01:43 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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by qq7678500549 Sun, 2020-08-09 18:59 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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464 |
by amorin Fri, 2021-02-12 08:53 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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468 |
by MA Wed, 2018-09-05 00:50 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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472 |
by matteoferla Thu, 2020-07-02 07:27 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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476 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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477 |
by jlawrie Wed, 2020-08-12 07:27 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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479 |
by ylwang Sun, 2018-11-18 17:51 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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481 |
by jlawrie Thu, 2020-08-20 11:00 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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487 |
by jlawrie Wed, 2020-08-12 08:57 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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488 |
by scyphs Mon, 2020-08-10 08:09 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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489 |
by sizhang Wed, 2018-12-05 15:22 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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492 |
by rmoretti Mon, 2019-08-26 12:17 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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496 |
by danpf Tue, 2019-09-03 10:15 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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496 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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498 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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502 |
by Corvin Wed, 2020-11-25 02:58 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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505 |
by danpf Fri, 2020-02-21 18:23 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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506 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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510 |
by smlewis Fri, 2019-09-27 11:54 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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512 |
by everyday847 Fri, 2019-08-23 04:08 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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513 |
by jlawrie Wed, 2020-08-12 08:56 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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by smlewis Mon, 2019-09-16 12:22 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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518 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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521 |
by almeida85 Wed, 2020-09-02 06:14 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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527 |
by jadolfbr Tue, 2020-01-28 09:13 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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533 |
by smlewis Tue, 2019-10-22 09:45 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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535 |
by almeida85 Tue, 2020-09-01 01:29 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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537 |
by rmoretti Mon, 2019-08-26 12:03 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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544 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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547 |
by enmirts Wed, 2018-03-28 10:34 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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548 |
by brspurri Thu, 2020-05-14 12:24 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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549 |
by JackMaguire Fri, 2019-11-22 13:45 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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550 |
by rmoretti Wed, 2019-09-18 10:36 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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550 |
by mbakalar Fri, 2018-08-31 13:06 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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565 |
by dhirajks Thu, 2018-12-13 19:34 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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566 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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567 |
by danpf Thu, 2020-09-24 13:44 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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569 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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574 |
by cm21 Wed, 2020-05-20 11:22 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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575 |
by danpf Wed, 2019-10-16 13:03 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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578 |
by jadolfbr Thu, 2019-09-19 08:53 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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578 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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579 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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580 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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580 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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581 |
by smlewis Tue, 2019-09-24 12:43 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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585 |
by bjharris Thu, 2020-07-02 11:09 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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586 |
by danpf Thu, 2019-10-10 09:55 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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587 |
by sdh_h Sun, 2017-12-17 06:07 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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588 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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594 |
by vmulligan Thu, 2019-06-13 15:01 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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596 |
by chrisHKL Wed, 2020-03-04 10:49 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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600 |
by vmulligan Tue, 2020-03-17 11:35 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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602 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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603 |
by sn Thu, 2017-10-05 17:07 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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603 |
by rmoretti Mon, 2019-06-24 14:42 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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610 |
by ssrb Fri, 2020-08-14 09:18 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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612 |
by asbelx Fri, 2018-04-20 03:33 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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618 |
by bjharris Wed, 2020-07-01 23:25 |
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