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Rosetta 3 - Applications
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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by Corvin Mon, 2019-12-02 02:00 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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359 |
by amorin Fri, 2021-02-12 08:53 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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359 |
by CATarr Wed, 2019-10-09 19:05 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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361 |
by Genta Tue, 2019-10-29 18:46 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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366 |
by pwging13 Thu, 2019-12-19 09:53 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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367 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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368 |
by sdh_h Wed, 2020-03-25 12:43 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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370 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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370 |
by matteoferla Mon, 2020-05-04 02:02 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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374 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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374 |
by jlawrie Thu, 2020-08-20 11:00 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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375 |
by matteoferla Mon, 2020-05-04 01:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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379 |
by jlawrie Wed, 2020-08-12 08:57 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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381 |
by nannemdp Sun, 2020-06-07 08:01 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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382 |
by jlawrie Wed, 2020-08-12 07:27 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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384 |
by rmoretti Wed, 2020-03-04 09:56 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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389 |
by jlawrie Wed, 2020-08-12 08:56 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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390 |
by matteoferla Thu, 2020-07-02 07:27 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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399 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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401 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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402 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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by scyphs Mon, 2020-08-10 08:09 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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405 |
by almeida85 Wed, 2020-09-02 06:14 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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by danpf Fri, 2020-02-21 17:05 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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410 |
by almeida85 Tue, 2020-09-01 01:29 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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410 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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412 |
by engand93 Wed, 2019-03-27 02:43 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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418 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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428 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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429 |
by MA Wed, 2018-09-05 00:50 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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by danpf Thu, 2020-09-24 13:44 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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433 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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435 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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438 |
by rmoretti Mon, 2019-08-26 12:17 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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440 |
by danpf Tue, 2019-09-03 10:15 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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441 |
by ylwang Sun, 2018-11-18 17:51 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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445 |
by smlewis Fri, 2019-09-27 11:54 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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447 |
by danpf Fri, 2020-02-21 18:23 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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449 |
by smlewis Mon, 2019-09-16 12:22 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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450 |
by jadolfbr Sun, 2020-12-06 17:41 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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450 |
by ssrb Fri, 2020-08-14 09:18 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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451 |
by sizhang Wed, 2018-12-05 15:22 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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456 |
by everyday847 Fri, 2019-08-23 04:08 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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459 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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462 |
by tuleshwori Thu, 2020-05-21 02:08 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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466 |
by brspurri Thu, 2020-05-14 12:24 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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472 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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473 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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473 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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by rmoretti Mon, 2019-08-26 12:03 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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482 |
by bjharris Thu, 2020-07-02 11:09 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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485 |
by smlewis Tue, 2019-10-22 09:45 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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488 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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488 |
by mbakalar Fri, 2018-08-31 13:06 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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488 |
by cm21 Wed, 2020-05-20 11:22 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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489 |
by rmoretti Wed, 2019-09-18 10:36 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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492 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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493 |
by JackMaguire Fri, 2019-11-22 13:45 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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496 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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502 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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502 |
by smlewis Tue, 2019-09-24 12:43 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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508 |
by danpf Wed, 2019-10-16 13:03 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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512 |
by danpf Thu, 2019-10-10 09:55 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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513 |
by enmirts Wed, 2018-03-28 10:34 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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519 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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519 |
by rmoretti Fri, 2020-07-10 09:59 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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520 |
by vmulligan Tue, 2020-03-17 11:35 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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522 |
by dhirajks Thu, 2018-12-13 19:34 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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523 |
by chrisHKL Wed, 2020-03-04 10:49 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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526 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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529 |
by Astghik Thu, 2020-10-15 00:48 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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536 |
by vmulligan Thu, 2019-06-13 15:01 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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537 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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542 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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546 |
by aloshbau Fri, 2020-01-10 16:48 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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547 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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547 |
by rmoretti Mon, 2019-06-24 14:42 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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549 |
by sdh_h Sun, 2017-12-17 06:07 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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550 |
by benhardy Fri, 2020-06-19 07:55 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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552 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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553 |
by lanselibai Fri, 2019-12-27 09:38 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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553 |
by lanselibai Tue, 2020-05-12 20:25 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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556 |
by bjharris Wed, 2020-07-01 23:25 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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557 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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566 |
by ctqwong Mon, 2020-07-27 01:48 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
0 |
568 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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569 |
by rmoretti Mon, 2019-08-26 12:49 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
0 |
571 |
by asbelx Fri, 2018-04-20 03:33 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
571 |
by rmoretti Tue, 2020-07-28 08:24 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
571 |
by Martin Floor Tue, 2020-01-21 11:15 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
572 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
573 |
by sn Thu, 2017-10-05 17:07 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
578 |
by hdelrisco Fri, 2019-10-18 17:16 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
583 |
by benhardy Sun, 2020-09-20 11:15 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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584 |
by chenna Wed, 2020-03-04 03:24 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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585 |
by ylwang Thu, 2020-03-12 20:42 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
585 |
by G Mustafa Wed, 2018-10-17 05:41 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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594 |
by rmoretti Wed, 2019-07-10 09:24 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
601 |
by rmoretti Mon, 2019-06-24 13:43 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
601 |
by rmoretti Wed, 2018-11-21 15:10 |
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