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Rosetta 3 - Applications
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,052 |
by ctqwong Thu, 2021-03-18 02:04 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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1,169 |
by smlewis Wed, 2021-03-24 14:59 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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1,572 |
by sam_dc Fri, 2021-03-26 12:04 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,215 |
by yels Wed, 2021-03-31 18:31 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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1,140 |
by everyday847 Sun, 2021-04-04 12:48 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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780 |
by code_Monkey Mon, 2021-04-05 10:40 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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2,005 |
by agctomer Thu, 2021-04-08 07:37 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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771 |
by georg Thu, 2021-04-08 09:31 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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2,810 |
by He Xiao Sun, 2021-04-11 19:29 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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2,417 |
by sam_dc Mon, 2021-04-12 07:24 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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743 |
by ojmel Mon, 2021-04-12 07:50 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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1,575 |
by chenna Mon, 2021-04-12 22:08 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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1,490 |
by ii_cnr Mon, 2021-04-12 23:44 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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820 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,907 |
by rmoretti Tue, 2021-04-20 13:27 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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1,527 |
by csaylan Tue, 2021-04-20 16:13 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,759 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,471 |
by chenna Wed, 2021-04-28 07:18 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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1,080 |
by vmulligan Wed, 2021-04-28 12:59 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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2,380 |
by DGR95 Wed, 2021-04-28 16:13 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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975 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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1,057 |
by rmoretti Thu, 2021-04-29 10:44 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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3,285 |
by ziruiw Fri, 2021-04-30 12:01 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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2,269 |
by duz Mon, 2021-05-03 07:50 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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2,802 |
by nc-ring Tue, 2021-05-04 12:26 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,645 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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794 |
by DGR95 Fri, 2021-05-14 12:51 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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1,336 |
by rmoretti Tue, 2021-05-18 07:21 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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827 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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1,295 |
by taylorjones Wed, 2021-06-09 16:38 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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37,965 |
by rmoretti Mon, 2021-06-14 12:56 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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1,135 |
by CameronJA Tue, 2021-06-15 20:02 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,864 |
by matteoferla Sat, 2021-06-19 03:07 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,388 |
by browns02 Tue, 2021-06-29 11:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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2,688 |
by happycaapi Tue, 2021-06-29 15:35 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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687 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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1,543 |
by vmulligan Tue, 2021-07-06 08:27 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,425 |
by rmoretti Fri, 2021-07-09 15:05 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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6,519 |
by matteoferla Mon, 2021-07-19 06:13 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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731 |
by nrollins Mon, 2021-07-26 14:16 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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779 |
by nrollins Mon, 2021-07-26 14:29 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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1,063 |
by everyday847 Fri, 2021-07-30 13:26 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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795 |
by listofdina Mon, 2021-08-02 06:51 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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1,244 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
1,056 |
by everyday847 Mon, 2021-08-16 10:43 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
2,018 |
by vizcarra Thu, 2021-08-26 10:16 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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3,751 |
by e3lm Tue, 2021-09-14 10:02 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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1,244 |
by matteoferla Wed, 2021-09-15 06:04 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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960 |
by amorin Mon, 2021-09-27 12:16 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,292 |
by nannemdp Mon, 2021-09-27 14:22 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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784 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
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2,369 |
by ozsolomon Thu, 2021-10-07 14:25 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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815 |
by sam_dc Sat, 2021-10-09 05:38 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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731 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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1,893 |
by chenna Tue, 2021-10-12 20:51 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
2,146 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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1,021 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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1,103 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,512 |
by zivben Sat, 2021-11-13 04:49 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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907 |
by Corvin Tue, 2021-11-16 07:22 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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849 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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6,488 |
by rayyoung Thu, 2021-11-18 10:13 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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860 |
by Soler Sun, 2021-11-21 22:20 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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965 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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3,160 |
by smlewis Wed, 2021-12-08 13:02 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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996 |
by Corvin Mon, 2021-12-13 09:07 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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1,048 |
by memilton Thu, 2021-12-16 09:09 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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960 |
by Ken Fri, 2021-12-17 09:49 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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2,776 |
by alonwenger Sat, 2021-12-18 12:32 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
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3,634 |
by danbo Wed, 2021-12-22 23:51 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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1,151 |
by bhavranek Sun, 2021-12-26 21:05 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,353 |
by dgm3 Fri, 2021-12-31 17:42 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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929 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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1,095 |
by Wenithor Thu, 2022-01-06 12:20 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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1,020 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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1,042 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
1,298 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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1,053 |
by Martin Floor Wed, 2022-01-26 07:46 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
1,029 |
by samuel_k Thu, 2022-01-27 01:08 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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1,219 |
by Prasoon Wed, 2022-02-09 09:04 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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3,722 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
3 |
2,048 |
by gezmi Tue, 2022-02-15 21:47 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
1,246 |
by tbelec Mon, 2022-02-28 12:37 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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1,076 |
by Hirbond Tue, 2022-03-01 13:16 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,673 |
by guowuchen Mon, 2022-03-07 23:34 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
0 |
825 |
by Ken Mon, 2022-03-14 15:14 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,556 |
by tingting Tue, 2022-03-15 23:55 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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2,115 |
by rmoretti Tue, 2022-03-22 09:10 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
1 |
1,474 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
1,576 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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950 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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772 |
by Isomerase Mon, 2022-03-28 01:19 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,200 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,930 |
by Corvin Thu, 2022-04-21 00:50 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,078 |
by dnamkr Fri, 2022-04-22 17:00 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
1,019 |
by sia Wed, 2022-04-27 19:59 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
1,282 |
by almeida85 Mon, 2022-05-02 05:05 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
881 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
1,010 |
by wangtao Thu, 2022-05-05 02:46 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
1,150 |
by rmoretti Tue, 2022-05-17 07:29 |
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