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Rosetta 3 - Applications
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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1,242 |
by matteoferla Wed, 2021-09-15 06:04 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,240 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,238 |
by chandana Tue, 2022-08-09 20:36 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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1,238 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,237 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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1,236 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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1,236 |
by rmoretti Fri, 2020-11-27 10:47 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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1,231 |
by ssrb Mon, 2020-06-22 13:12 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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1,221 |
by marinok Mon, 2020-09-28 14:11 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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1,218 |
by Prasoon Wed, 2022-02-09 09:04 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,218 |
by drewaight Mon, 2020-11-02 17:07 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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1,215 |
by xfradera Fri, 2023-01-27 06:36 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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1,213 |
by dhirajks Thu, 2018-12-13 19:34 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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1,206 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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1,205 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,200 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,200 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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1,199 |
by rmoretti Sun, 2020-11-08 18:56 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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1,194 |
by asbelx Fri, 2018-04-20 03:33 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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1,193 |
by bjharris Fri, 2021-01-22 17:34 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,171 |
by mbakalar Fri, 2018-08-31 13:06 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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1,171 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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1,168 |
by smlewis Wed, 2021-03-24 14:59 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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1,155 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
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1,154 |
by ldx022 Thu, 2023-03-16 04:13 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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1,154 |
by sn Thu, 2017-10-05 17:07 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,153 |
by rmoretti Fri, 2022-09-23 09:38 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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1,149 |
by bhavranek Sun, 2021-12-26 21:05 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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1,149 |
by ssrb Tue, 2020-09-29 12:37 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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1,147 |
by rmoretti Tue, 2022-05-17 07:29 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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1,142 |
by stannowitz Tue, 2023-01-17 23:48 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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1,140 |
by everyday847 Sun, 2021-04-04 12:48 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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1,134 |
by CameronJA Tue, 2021-06-15 20:02 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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1,134 |
by enmirts Wed, 2018-03-28 10:34 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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1,131 |
by jlawrie Wed, 2020-08-12 08:47 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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1,123 |
by cjy318 Tue, 2020-07-28 19:47 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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1,122 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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1,121 |
by rmoretti Fri, 2022-07-15 13:50 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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1,108 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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1,103 |
by sdh_h Wed, 2020-03-25 12:43 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
1,101 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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1,100 |
by sdh_h Sun, 2017-12-17 06:07 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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1,094 |
by jcampecino Wed, 2020-05-13 12:22 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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1,091 |
by Wenithor Thu, 2022-01-06 12:20 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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1,090 |
by Corvin Wed, 2020-12-30 09:21 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
1,078 |
by vmulligan Wed, 2021-04-28 12:59 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
0 |
1,076 |
by ylwang Sun, 2018-11-18 17:51 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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1,072 |
by Hirbond Tue, 2022-03-01 13:16 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
1 |
1,065 |
by rmoretti Fri, 2021-03-05 09:35 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
1,063 |
by rmoretti Fri, 2022-07-08 10:27 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
1 |
1,060 |
by everyday847 Fri, 2021-07-30 13:26 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
1 |
1,057 |
by rmoretti Thu, 2021-04-29 10:44 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
1,054 |
by everyday847 Mon, 2021-08-16 10:43 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
1,050 |
by sc19 Thu, 2022-07-14 03:40 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
6 |
1,050 |
by yueyuedake Sun, 2023-07-16 19:17 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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1,050 |
by Martin Floor Wed, 2022-01-26 07:46 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
0 |
1,045 |
by chrisHKL Fri, 2020-02-28 14:52 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
1,044 |
by memilton Thu, 2021-12-16 09:09 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
1,041 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
1,041 |
by Soler Fri, 2020-09-18 08:09 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
1,037 |
by almeida85 Mon, 2020-08-31 07:17 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
1,034 |
by rohi Mon, 2021-01-11 13:58 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
1,028 |
by Ruska322 Sat, 2019-09-07 05:21 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
1,026 |
by samuel_k Thu, 2022-01-27 01:08 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
1,021 |
by matteoferla Wed, 2022-07-20 10:50 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
1,019 |
by sia Wed, 2022-04-27 19:59 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
0 |
1,019 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
1,019 |
by LanMei Wed, 2020-10-07 09:58 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
1,018 |
by pwging13 Thu, 2019-12-19 09:53 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
1,018 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
1,013 |
by sizhang Wed, 2018-12-05 15:22 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
1,012 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
1,010 |
by engand93 Wed, 2019-03-27 02:43 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
1,009 |
by wangtao Thu, 2022-05-05 02:46 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
1,008 |
by wentlewi Fri, 2020-03-13 03:24 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
0 |
1,002 |
by MA Wed, 2018-09-05 00:50 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
1,002 |
by Corvin Thu, 2020-04-02 00:16 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
1,000 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
998 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
996 |
by Corvin Mon, 2021-12-13 09:07 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
0 |
991 |
by Corvin Mon, 2019-12-02 02:00 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
991 |
by lanselibai Sat, 2020-04-11 02:10 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
990 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
0 |
984 |
by e3lm Tue, 2022-05-17 11:58 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
984 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
0 |
983 |
by chrisHKL Thu, 2020-03-05 12:58 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
0 |
974 |
by aralz Thu, 2021-02-11 00:46 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
0 |
974 |
by ChiauShu Sat, 2020-08-22 20:16 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
973 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
0 |
972 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
965 |
by GebauerJ Tue, 2022-08-16 07:44 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
964 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
0 |
962 |
by SubhaK Wed, 2023-01-18 23:33 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
959 |
by amorin Mon, 2021-09-27 12:16 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
959 |
by Ken Fri, 2021-12-17 09:49 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
0 |
953 |
by sc19 Thu, 2022-07-14 01:34 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
951 |
by agctomer Tue, 2021-01-19 22:45 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
948 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
947 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
938 |
by almeida85 Thu, 2022-08-18 07:53 |
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