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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
817 by aaj
Wed, 2016-02-24 07:37
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
834 by jrcf
Mon, 2016-02-15 17:59
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
1,171 by jrcf
Fri, 2016-02-12 16:42
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
3,032 by Marius1987
Fri, 2016-02-05 07:20
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
1,640 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,093 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
2,111 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
444 by achambe
Mon, 2016-01-04 11:26
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
651 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
2,723 by eyong123
Wed, 2015-12-09 07:17
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
1,009 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
675 by rmoretti
Tue, 2015-11-24 16:16
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
823 by rmoretti
Tue, 2015-11-24 16:07
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
2,837 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
1,427 by rosend
Tue, 2015-11-17 12:12
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,039 by attesor
Tue, 2015-11-17 07:36
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
1,360 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
618 by rmoretti
Tue, 2015-11-10 11:10
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
2,471 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
791 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
856 by attesor
Mon, 2015-10-26 09:01
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
598 by smlewis
Thu, 2015-10-22 08:04
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
3,903 by attesor
Wed, 2015-10-21 13:53
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
1,335 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
2,756 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
1,103 by jrcf
Mon, 2015-10-05 21:32
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
796 by rmoretti
Fri, 2015-10-02 12:30
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
6,933 by rmoretti
Mon, 2015-09-28 15:00
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
1,970 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,033 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
1,282 by jrcf
Mon, 2015-09-21 11:10
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
1,058 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
1,091 by cossio
Tue, 2015-09-15 12:48
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
5,364 by rmoretti
Fri, 2015-09-11 13:27
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
872 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
2,021 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
697 by rmoretti
Wed, 2015-09-09 12:01
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
980 by rmoretti
Fri, 2015-09-04 10:25
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
1,515 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
2,880 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
1,410 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
1,023 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
762 by sgourn
Tue, 2015-08-18 18:25
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
2,568 by rmoretti
Tue, 2015-08-18 16:47
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
785 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
1,097 by jharamesh
Sat, 2015-08-08 19:51
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
733 by rmoretti
Thu, 2015-08-06 08:57
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
883 by rmoretti
Tue, 2015-07-14 14:59
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
1,247 by rmoretti
Sat, 2015-07-11 13:38
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
800 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
2,899 by eyong123
Mon, 2015-06-29 04:44
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
1,107 by mintseris
Wed, 2015-06-24 22:04
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
1,638 by beowulfey
Tue, 2015-06-23 16:10
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
822 by rmoretti
Sat, 2015-06-20 20:07
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
1,539 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
3,309 by protos_heis
Mon, 2015-06-08 07:00
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
708 by smlewis
Mon, 2015-06-08 06:35
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
1,438 by mtyras
Mon, 2015-06-08 03:18
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
1,319 by chelsell
Wed, 2015-05-27 14:36
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
765 by rmoretti
Mon, 2015-05-25 12:37
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
852 by rmoretti
Mon, 2015-05-25 12:30
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
1,313 by rmoretti
Mon, 2015-05-25 11:49
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
1,021 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
2,045 by rmoretti
Thu, 2015-04-30 16:46
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
982 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
663 by shaunmk
Mon, 2015-04-27 02:33
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
1,313 by Wizard
Sun, 2015-04-26 22:36
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
2,457 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
894 by eyong123
Wed, 2015-04-22 11:33
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
1,484 by dswhit
Tue, 2015-04-21 10:14
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
2,791 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
1,366 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
707 by jennifer
Wed, 2015-04-08 05:29
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
2,720 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
2,858 by rmoretti
Tue, 2015-03-31 08:56
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
1,677 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
1,339 by jennifer
Fri, 2015-03-27 05:56
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,058 by rmoretti
Wed, 2015-03-25 12:39
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
1,103 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
1,154 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
1,239 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
2,672 by lanselibai
Sun, 2015-03-01 15:00
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
1,100 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
1,344 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
2,130 by felipet
Wed, 2015-02-11 05:13
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
927 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
1,819 by rmoretti
Mon, 2015-02-09 12:04
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
967 by lanselibai
Thu, 2015-01-29 00:50
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
9,082 by masterofpuppets
Tue, 2015-01-27 04:26
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
2,056 by attesor
Tue, 2015-01-27 02:20
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
1,113 by rmoretti
Mon, 2015-01-26 12:15
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
1,254 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
1,401 by cossio
Tue, 2015-01-20 06:40
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
1,838 by cossio
Mon, 2015-01-19 07:14
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
1,784 by cossio
Mon, 2015-01-19 07:10
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
555 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
554 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
1,317 by lanselibai
Tue, 2015-01-13 14:25
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
817 by rmoretti
Tue, 2015-01-13 07:44
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
557 by lanselibai
Sun, 2015-01-11 10:50
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