You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
363 by rmoretti
Mon, 2019-08-26 12:03
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
295 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
637 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
351 by everyday847
Fri, 2019-08-23 04:08
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
0
319 by tatsiana.bylund
Sun, 2019-08-18 23:17
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
329 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
488 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
676 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
287 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
1,424 by mxp
Mon, 2019-08-12 18:42
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
1,473 by Yero
Thu, 2019-07-18 01:39
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
521 by rmoretti
Wed, 2019-07-10 10:10
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
630 by rmoretti
Wed, 2019-07-10 09:47
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
480 by rmoretti
Wed, 2019-07-10 09:24
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
671 by rmoretti
Wed, 2019-07-10 09:22
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
1,131 by rmoretti
Tue, 2019-07-09 10:13
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
578 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
820 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
566 by orionshih
Wed, 2019-06-26 03:54
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
495 by rmoretti
Mon, 2019-06-24 15:19
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
439 by rmoretti
Mon, 2019-06-24 14:42
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
495 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
830 by rmoretti
Mon, 2019-06-24 13:46
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
470 by rmoretti
Mon, 2019-06-24 13:43
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
493 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
424 by vmulligan
Thu, 2019-06-13 15:01
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
525 by vmulligan
Thu, 2019-06-13 14:59
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
941 by esozdemir
Thu, 2019-06-13 12:19
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
665 by Corvin
Wed, 2019-06-12 00:04
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
2
609 by asbelx
Sat, 2019-06-08 17:03
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
2,443 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
650 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
478 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
616 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
887 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
976 by ajasja
Wed, 2019-05-15 15:40
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
501 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
513 by rmoretti
Thu, 2019-05-09 15:40
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
488 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
1,014 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
547 by nannemdp
Thu, 2019-04-25 07:58
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
1
501 by rmoretti
Tue, 2019-04-16 11:07
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
926 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
826 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
526 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
1,874 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
1,800 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
549 by rmoretti
Fri, 2019-03-29 13:21
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
634 by everyday847
Fri, 2019-03-29 13:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
1
920 by rmoretti
Fri, 2019-03-29 13:06
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
1,437 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
564 by rmoretti
Fri, 2019-03-29 09:58
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
486 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,190 by rmoretti
Fri, 2019-03-29 09:30
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
341 by engand93
Wed, 2019-03-27 02:43
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
1,648 by purvi24
Mon, 2019-03-11 06:43
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
1,141 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
832 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
827 by tsztain
Mon, 2019-02-18 09:55
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
756 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
432 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
916 by smlewis
Wed, 2018-12-12 16:51
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
1,696 by tsztain
Tue, 2018-12-11 13:41
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
684 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
394 by sizhang
Wed, 2018-12-05 15:22
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
706 by rmoretti
Tue, 2018-12-04 08:55
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
2,245 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
803 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
1,473 by rmoretti
Fri, 2018-11-23 11:23
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
752 by rmoretti
Fri, 2018-11-23 07:59
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
8,174 by rmoretti
Wed, 2018-11-21 15:45
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
733 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
595 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
498 by rmoretti
Wed, 2018-11-21 15:10
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
375 by ylwang
Sun, 2018-11-18 17:51
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,372 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
2,245 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
540 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,163 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
2,664 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,123 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
483 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
1,570 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
954 by smlewis
Mon, 2018-10-15 08:42
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
1,074 by cossio
Fri, 2018-10-12 04:43
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
3,960 by Anpu
Tue, 2018-09-25 19:06
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
2,244 by Anpu
Tue, 2018-09-25 18:53
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
608 by rmoretti
Thu, 2018-09-20 09:23
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
879 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
912 by smlewis
Fri, 2018-09-14 10:34
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
1,103 by smlewis
Mon, 2018-09-10 11:48
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
367 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
410 by mbakalar
Fri, 2018-08-31 13:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
603 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
1,738 by smlewis
Wed, 2018-08-08 15:48
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
788 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
571 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
608 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
785 by jlapin
Wed, 2018-08-01 07:15
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
546 by smlewis
Fri, 2018-07-27 13:32
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications