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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,251 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
939 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
3,372 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
1,747 by max
Thu, 2014-11-27 02:56
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
669 by smlewis
Fri, 2017-06-16 07:35
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
1,306 by sushreet
Tue, 2014-08-26 13:02
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
887 by everyday847
Wed, 2017-05-17 20:03
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,023 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
594 by smlewis
Thu, 2017-06-22 13:31
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,356 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
1,562 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
2,302 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
2,200 by aloshbau
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
1,528 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
2,469 by rmoretti
Thu, 2015-04-30 16:46
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
4,335 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
5,171 by akpole
Mon, 2014-04-21 06:47
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
2,746 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
1,020 by subha
Fri, 2017-06-09 15:42
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,462 by rmoretti
Mon, 2014-04-21 06:48
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
1,585 by smlewis
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
16,443 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,063 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
876 by rmoretti
Tue, 2016-07-12 08:56
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
2,349 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
111 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
1,562 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
3,192 by belousoff
Mon, 2017-06-26 16:46
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
1,938 by maxebert
Mon, 2014-04-21 06:47
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
1,724 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
614 by rmoretti
Fri, 2018-11-23 11:23
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
3,831 by rmoretti
Mon, 2014-04-21 10:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
1,391 by rmoretti
Thu, 2017-08-24 08:19
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
2,410 by attesor
Tue, 2015-01-27 02:20
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
941 by everyday847
Sun, 2014-09-28 21:16
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,163 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
550 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,000 by Pernille
Fri, 2014-06-20 00:17
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
1,773 by Pernille
Thu, 2014-07-03 07:21
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
19,394 by rmoretti
Fri, 2018-05-18 12:35
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
2,173 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
2,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
719 by Derek
Wed, 2016-04-27 01:31
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
783 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
1,281 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,452 by smlewis
Mon, 2014-04-21 06:47
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
672 by Marius1987
Sun, 2016-04-10 12:09
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
2,816 by albumns
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
2,424 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
2,050 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
3,766 by Anonymous
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
6,584 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
2,847 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,321 by kamau
Wed, 2014-09-24 11:35
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
5,851 by kamau
Mon, 2014-09-22 09:39
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
875 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,512 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
1,631 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
1,616 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
2,686 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
3,245 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
1,839 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
1,644 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
1,244 by cam11
Wed, 2014-08-13 10:06
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
1,891 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
1,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
153 by mbakalar
Fri, 2018-08-31 13:06
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
248 by evo_umich
Mon, 2018-04-02 12:13
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
2,635 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,108 by ays
Tue, 2014-09-30 08:31
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
1,471 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
2,978 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
649 by tiagogomes89
Mon, 2015-01-19 02:45
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
7,482 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
1,998 by felipet
Mon, 2014-04-21 06:47
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
680 by smlewis
Fri, 2016-11-11 08:33
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
1,089 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
1,373 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
1,536 by smlewis
Mon, 2014-04-21 06:47
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,287 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
3,806 by smlewis
Mon, 2014-04-21 06:47
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,090 by danielles
Mon, 2014-04-21 06:47
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
1,870 by rmoretti
Fri, 2015-06-19 13:53
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
2,666 by smlewis
Fri, 2017-09-08 09:16
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
1,718 by dgront
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
1,779 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
2,958 by yarovoy
Mon, 2014-04-21 06:47
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
602 by alex
Sun, 2017-02-19 08:12
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
4,563 by smlewis
Wed, 2016-08-17 07:56
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
1,537 by exchhattu
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
958 by David Hoover
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
2,245 by gw
Mon, 2014-04-21 06:47
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
4,845 by starone
Fri, 2016-06-24 18:29
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,808 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
572 by achambe
Mon, 2016-01-04 11:26
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
8,285 by skovacs
Mon, 2014-04-21 06:47
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
1,485 by jrcf
Mon, 2015-10-05 21:32
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
1,904 by deltag
Mon, 2014-04-21 06:47
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
736 by smlewis
Wed, 2016-03-09 04:11
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