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Rosetta 3 - Applications
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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1,158 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,161 |
by rmoretti Fri, 2022-09-23 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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1,170 |
by smlewis Wed, 2021-03-24 14:59 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,171 |
by mbakalar Fri, 2018-08-31 13:06 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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1,175 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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1,195 |
by asbelx Fri, 2018-04-20 03:33 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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1,197 |
by bjharris Fri, 2021-01-22 17:34 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,200 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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1,201 |
by rmoretti Sun, 2020-11-08 18:56 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,201 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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1,211 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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1,211 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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1,214 |
by dhirajks Thu, 2018-12-13 19:34 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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1,219 |
by xfradera Fri, 2023-01-27 06:36 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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1,220 |
by Prasoon Wed, 2022-02-09 09:04 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,222 |
by drewaight Mon, 2020-11-02 17:07 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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1,225 |
by marinok Mon, 2020-09-28 14:11 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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1,233 |
by ssrb Mon, 2020-06-22 13:12 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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1,237 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,238 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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1,240 |
by rmoretti Fri, 2020-11-27 10:47 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,242 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,246 |
by chandana Tue, 2022-08-09 20:36 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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1,247 |
by matteoferla Wed, 2021-09-15 06:04 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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1,247 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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1,249 |
by tbelec Mon, 2022-02-28 12:37 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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1,252 |
by evo_umich Mon, 2018-04-02 12:13 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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1,253 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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1,255 |
by vmulligan Thu, 2020-05-21 18:33 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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1,262 |
by benhardy Thu, 2020-05-28 08:45 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,262 |
by matteoferla Mon, 2020-05-04 02:02 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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1,267 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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1,270 |
by rmoretti Wed, 2020-12-02 07:27 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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1,285 |
by almeida85 Mon, 2022-05-02 05:05 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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1,298 |
by taylorjones Wed, 2021-06-09 16:38 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,299 |
by nannemdp Mon, 2021-09-27 14:22 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,299 |
by danpf Fri, 2020-02-21 17:05 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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1,301 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,307 |
by tylerborrman Tue, 2016-12-06 14:46 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,309 |
by brspurri Wed, 2021-01-20 08:11 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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1,310 |
by smlewis Fri, 2019-09-27 11:54 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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1,319 |
by rmoretti Wed, 2020-03-04 09:56 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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1,321 |
by leygkn Tue, 2020-09-22 22:46 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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1,331 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,335 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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1,341 |
by rmoretti Tue, 2021-05-18 07:21 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,351 |
by rmoretti Mon, 2020-09-14 06:36 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,354 |
by dgm3 Fri, 2021-12-31 17:42 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,364 |
by ac.research Mon, 2017-01-09 00:59 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,374 |
by nannemdp Sun, 2020-06-07 08:01 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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1,374 |
by benhardy Wed, 2020-09-30 08:42 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,378 |
by brspurri Mon, 2021-01-18 18:14 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,381 |
by danpf Tue, 2020-07-14 10:27 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,384 |
by mrconde96 Sun, 2022-10-02 05:34 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,389 |
by browns02 Tue, 2021-06-29 11:41 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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1,399 |
by jxw Wed, 2023-10-11 10:04 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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1,401 |
by liuwenxi Fri, 2022-08-05 09:50 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,405 |
by danpf Fri, 2020-02-21 18:23 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,414 |
by rmoretti Mon, 2019-08-26 12:17 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,419 |
by fred Wed, 2014-12-03 12:28 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,420 |
by JackMaguire Fri, 2019-11-22 13:45 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,422 |
by danpf Tue, 2019-09-03 10:15 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,424 |
by ksteczk Sat, 2020-04-11 11:23 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,427 |
by rmoretti Fri, 2021-07-09 15:05 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,429 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,430 |
by rmoretti Mon, 2019-08-26 12:03 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,434 |
by cryosky Mon, 2021-03-01 21:37 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,434 |
by jadolfbr Tue, 2020-01-28 09:13 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,436 |
by yigallah Mon, 2014-12-15 08:46 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,437 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,444 |
by everyday847 Fri, 2019-08-23 04:08 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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1,449 |
by code_Monkey Thu, 2021-03-04 12:14 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,454 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,455 |
by aaj Fri, 2016-02-26 08:40 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,469 |
by smlewis Mon, 2019-09-16 12:22 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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1,469 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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1,472 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,477 |
by chenna Wed, 2021-04-28 07:18 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,477 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,483 |
by vmulligan Thu, 2019-06-13 15:01 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,484 |
by matteoferla Mon, 2020-05-04 01:43 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,485 |
by rmoretti Mon, 2019-06-24 14:42 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,488 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,490 |
by felipet Wed, 2014-07-02 10:23 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,493 |
by danpf Wed, 2019-10-16 13:03 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
1,495 |
by ii_cnr Mon, 2021-04-12 23:44 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,495 |
by smlewis Tue, 2019-10-22 09:45 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,495 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
1,504 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,505 |
by yliang20 Tue, 2022-06-07 08:36 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,510 |
by rtorquato Fri, 2022-11-25 12:05 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,512 |
by zivben Sat, 2021-11-13 04:49 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,515 |
by rmoretti Wed, 2019-09-18 10:36 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,517 |
by rmoretti Wed, 2019-07-10 09:24 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,520 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,522 |
by rmoretti Tue, 2019-04-16 11:07 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
1,525 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
0 |
1,526 |
by jlawrie Fri, 2020-08-14 14:09 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
1,528 |
by rmoretti Fri, 2019-03-29 09:45 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
6 |
1,529 |
by rmoretti Mon, 2023-07-10 08:57 |
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