You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
1,336 by rmoretti
Fri, 2015-01-02 11:45
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
722 by rmoretti
Fri, 2015-01-02 11:06
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
1,025 by rmoretti
Fri, 2015-01-02 09:43
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
518 by yigallah
Mon, 2014-12-15 08:46
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
23,400 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
851 by rmoretti
Wed, 2014-12-03 19:07
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
549 by fred
Wed, 2014-12-03 12:28
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
10,353 by lanselibai
Tue, 2014-12-02 09:46
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
2,556 by lanselibai
Tue, 2014-12-02 09:43
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
1,401 by max
Thu, 2014-11-27 02:56
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
688 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
2,030 by zcrook
Tue, 2014-11-25 10:27
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
2,649 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
2,499 by brianmlee
Mon, 2014-11-24 19:40
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
2,039 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
3,136 by lanselibai
Thu, 2014-11-20 02:15
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
1,914 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
2
1,049 by lanselibai
Wed, 2014-11-19 08:01
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
774 by rmoretti
Tue, 2014-11-18 09:10
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
2,875 by lanselibai
Wed, 2014-11-12 11:17
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
2,123 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
1,149 by lanselibai
Tue, 2014-11-11 04:42
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
5,321 by lanselibai
Fri, 2014-11-07 02:06
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,013 by rmoretti
Tue, 2014-11-04 10:33
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
2,845 by rmoretti
Tue, 2014-11-04 10:28
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
1,123 by rmoretti
Tue, 2014-11-04 08:53
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
2,334 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
1,718 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,635 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
893 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
811 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
843 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
2,145 by lanselibai
Thu, 2014-10-23 03:26
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
1,347 by krlitros87
Wed, 2014-10-22 09:31
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
1,396 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
18,513 by rmoretti
Fri, 2014-10-17 10:17
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
3,839 by lanselibai
Fri, 2014-10-17 05:10
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
1,142 by lanselibai
Fri, 2014-10-17 03:36
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
2,218 by lanselibai
Wed, 2014-10-15 03:52
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
9,519 by lanselibai
Wed, 2014-10-15 01:54
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
1,475 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
1,340 by chelsell
Wed, 2014-10-08 12:25
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
1,173 by Pernille
Wed, 2014-10-08 10:41
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
2,736 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
4,708 by lanselibai
Tue, 2014-10-07 02:58
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
1,341 by rmoretti
Mon, 2014-10-06 16:00
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
1,714 by lanselibai
Mon, 2014-10-06 15:30
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
4,545 by lanselibai
Wed, 2014-10-01 02:13
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
908 by ays
Tue, 2014-09-30 08:31
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
3,802 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
2,550 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
793 by everyday847
Sun, 2014-09-28 21:16
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
1,378 by lanselibai
Fri, 2014-09-26 14:58
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
1,982 by lanselibai
Wed, 2014-09-24 13:21
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,112 by kamau
Wed, 2014-09-24 11:35
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
4,988 by kamau
Mon, 2014-09-22 09:39
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
802 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
1,098 by sushreet
Tue, 2014-08-26 13:02
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,070 by rmoretti
Fri, 2014-08-15 08:06
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
1,060 by cam11
Wed, 2014-08-13 10:06
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
3,629 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
6,508 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
1,788 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
1,421 by rmoretti
Mon, 2014-08-04 14:51
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,229 by franfdez
Mon, 2014-07-28 01:04
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
802 by rmoretti
Sun, 2014-07-27 10:48
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,005 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
988 by felipet
Thu, 2014-07-17 10:13
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
917 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
1,559 by Pernille
Thu, 2014-07-03 07:21
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
2,032 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
567 by felipet
Wed, 2014-07-02 10:23
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
1,330 by felipet
Wed, 2014-07-02 07:26
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
855 by Pernille
Fri, 2014-06-20 00:17
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
1,575 by rmoretti
Tue, 2014-06-17 08:51
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
1,321 by attesor
Mon, 2014-06-16 07:34
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
1,233 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
1,791 by kxiao
Thu, 2014-06-05 08:37
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
965 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
593 by msk
Tue, 2014-06-03 11:09
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
903 by rmoretti
Mon, 2014-05-26 09:29
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
2,869 by afmo
Thu, 2014-05-22 01:19
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
1,697 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,269 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,039 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
1,637 by ahonegger
Mon, 2014-05-12 09:08
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
1,824 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,404 by smlewis
Mon, 2014-05-12 08:32
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,521 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
5,973 by rmoretti
Thu, 2014-04-24 14:43
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
3,275 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
1,583 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
3,503 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,431 by fred
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
2,465 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
1,585 by fred
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
1,945 by rmoretti
Mon, 2014-04-21 06:48
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
2,676 by tfliu
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,394 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
2,699 by rmoretti
Mon, 2014-04-21 06:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications