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Rosetta 3 - Applications

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Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
1,782 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
2
983 by lanselibai
Wed, 2014-11-19 08:01
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
727 by rmoretti
Tue, 2014-11-18 09:10
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
2,677 by lanselibai
Wed, 2014-11-12 11:17
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
1,997 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
1,092 by lanselibai
Tue, 2014-11-11 04:42
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
5,051 by lanselibai
Fri, 2014-11-07 02:06
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
957 by rmoretti
Tue, 2014-11-04 10:33
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
2,679 by rmoretti
Tue, 2014-11-04 10:28
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
1,040 by rmoretti
Tue, 2014-11-04 08:53
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
2,173 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
1,632 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,598 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
853 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
768 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
801 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
2,001 by lanselibai
Thu, 2014-10-23 03:26
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
1,272 by krlitros87
Wed, 2014-10-22 09:31
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
1,355 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
18,394 by rmoretti
Fri, 2014-10-17 10:17
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
3,621 by lanselibai
Fri, 2014-10-17 05:10
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
1,082 by lanselibai
Fri, 2014-10-17 03:36
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
2,056 by lanselibai
Wed, 2014-10-15 03:52
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
8,780 by lanselibai
Wed, 2014-10-15 01:54
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
1,389 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
1,290 by chelsell
Wed, 2014-10-08 12:25
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
1,108 by Pernille
Wed, 2014-10-08 10:41
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
2,589 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
4,410 by lanselibai
Tue, 2014-10-07 02:58
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
1,277 by rmoretti
Mon, 2014-10-06 16:00
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
1,673 by lanselibai
Mon, 2014-10-06 15:30
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
4,294 by lanselibai
Wed, 2014-10-01 02:13
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
866 by ays
Tue, 2014-09-30 08:31
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
3,451 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
2,506 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
752 by everyday847
Sun, 2014-09-28 21:16
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
1,167 by lanselibai
Fri, 2014-09-26 14:58
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
1,809 by lanselibai
Wed, 2014-09-24 13:21
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,038 by kamau
Wed, 2014-09-24 11:35
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
4,676 by kamau
Mon, 2014-09-22 09:39
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
760 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
1,051 by sushreet
Tue, 2014-08-26 13:02
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,015 by rmoretti
Fri, 2014-08-15 08:06
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
1,009 by cam11
Wed, 2014-08-13 10:06
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
3,493 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
6,155 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
1,686 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
1,363 by rmoretti
Mon, 2014-08-04 14:51
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,173 by franfdez
Mon, 2014-07-28 01:04
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
759 by rmoretti
Sun, 2014-07-27 10:48
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
956 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
927 by felipet
Thu, 2014-07-17 10:13
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
868 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
1,496 by Pernille
Thu, 2014-07-03 07:21
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
1,900 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
540 by felipet
Wed, 2014-07-02 10:23
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
1,277 by felipet
Wed, 2014-07-02 07:26
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
817 by Pernille
Fri, 2014-06-20 00:17
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
1,501 by rmoretti
Tue, 2014-06-17 08:51
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
1,256 by attesor
Mon, 2014-06-16 07:34
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
1,179 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
1,698 by kxiao
Thu, 2014-06-05 08:37
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
908 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
572 by msk
Tue, 2014-06-03 11:09
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
861 by rmoretti
Mon, 2014-05-26 09:29
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
2,720 by afmo
Thu, 2014-05-22 01:19
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
1,627 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,231 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
1,984 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
1,590 by ahonegger
Mon, 2014-05-12 09:08
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
1,746 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,364 by smlewis
Mon, 2014-05-12 08:32
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,452 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
5,588 by rmoretti
Thu, 2014-04-24 14:43
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
3,082 by rmoretti
Mon, 2014-04-21 10:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
1,526 by fred
Mon, 2014-04-21 06:48
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
1,524 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
3,312 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,327 by fred
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
2,353 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,357 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
2,596 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
1,378 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
1,836 by rmoretti
Mon, 2014-04-21 06:48
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
2,556 by tfliu
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,361 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
1,650 by Ashafix
Mon, 2014-04-21 06:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,314 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
1,509 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,306 by smlewis
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
2,548 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
2,378 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,628 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
1
1,557 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
3,135 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
3,272 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
2,419 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,258 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,522 by smlewis
Mon, 2014-04-21 06:48
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,569 by rmoretti
Mon, 2014-04-21 06:48
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