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Rosetta 3 - Applications
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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5,802 |
by afmo Thu, 2014-05-22 01:19 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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2,289 |
by rmoretti Mon, 2014-05-26 09:29 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,540 |
by msk Tue, 2014-06-03 11:09 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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2,743 |
by mdidonato Wed, 2014-06-04 14:55 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,734 |
by kxiao Thu, 2014-06-05 08:37 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,363 |
by ahonegger Fri, 2014-06-06 09:31 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,518 |
by attesor Mon, 2014-06-16 07:34 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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5,598 |
by rmoretti Tue, 2014-06-17 08:51 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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2,136 |
by Pernille Fri, 2014-06-20 00:17 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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3,307 |
by felipet Wed, 2014-07-02 07:26 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,489 |
by felipet Wed, 2014-07-02 10:23 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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5,182 |
by rmoretti Wed, 2014-07-02 16:55 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,973 |
by Pernille Thu, 2014-07-03 07:21 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,355 |
by smlewis Mon, 2014-07-07 11:58 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,780 |
by felipet Thu, 2014-07-17 10:13 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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2,515 |
by rmoretti Mon, 2014-07-21 10:51 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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2,185 |
by rmoretti Sun, 2014-07-27 10:48 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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3,097 |
by franfdez Mon, 2014-07-28 01:04 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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3,019 |
by rmoretti Mon, 2014-08-04 14:51 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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4,294 |
by protos_heis Tue, 2014-08-05 12:47 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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16,444 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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9,660 |
by rmoretti Tue, 2014-08-12 08:15 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,886 |
by cam11 Wed, 2014-08-13 10:06 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,750 |
by rmoretti Fri, 2014-08-15 08:06 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,953 |
by sushreet Tue, 2014-08-26 13:02 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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2,144 |
by rmoretti Thu, 2014-08-28 09:42 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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12,122 |
by kamau Mon, 2014-09-22 09:39 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,486 |
by kamau Wed, 2014-09-24 11:35 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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5,076 |
by lanselibai Wed, 2014-09-24 13:21 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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3,970 |
by lanselibai Fri, 2014-09-26 14:58 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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2,210 |
by everyday847 Sun, 2014-09-28 21:16 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,355 |
by lanselibai Tue, 2014-09-30 02:28 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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10,068 |
by lanselibai Tue, 2014-09-30 03:45 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
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2,728 |
by ays Tue, 2014-09-30 08:31 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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10,340 |
by lanselibai Wed, 2014-10-01 02:13 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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3,620 |
by lanselibai Mon, 2014-10-06 15:30 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,368 |
by rmoretti Mon, 2014-10-06 16:00 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,954 |
by lanselibai Tue, 2014-10-07 02:58 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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5,892 |
by jadolfbr Tue, 2014-10-07 16:05 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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3,076 |
by Pernille Wed, 2014-10-08 10:41 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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3,249 |
by chelsell Wed, 2014-10-08 12:25 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,535 |
by lanselibai Mon, 2014-10-13 10:10 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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24,833 |
by lanselibai Wed, 2014-10-15 01:54 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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5,656 |
by lanselibai Wed, 2014-10-15 03:52 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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3,060 |
by lanselibai Fri, 2014-10-17 03:36 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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7,508 |
by lanselibai Fri, 2014-10-17 05:10 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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21,109 |
by rmoretti Fri, 2014-10-17 10:17 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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3,136 |
by jadolfbr Mon, 2014-10-20 13:42 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,428 |
by krlitros87 Wed, 2014-10-22 09:31 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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4,621 |
by lanselibai Thu, 2014-10-23 03:26 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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2,183 |
by rmoretti Thu, 2014-10-23 13:55 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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2,298 |
by jadolfbr Fri, 2014-10-31 08:45 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,374 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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3,034 |
by jharamesh Mon, 2014-11-03 12:50 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,800 |
by lanselibai Mon, 2014-11-03 13:15 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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7,288 |
by rmoretti Mon, 2014-11-03 15:47 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,871 |
by rmoretti Tue, 2014-11-04 08:53 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,695 |
by rmoretti Tue, 2014-11-04 10:28 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,902 |
by rmoretti Tue, 2014-11-04 10:33 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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14,004 |
by lanselibai Fri, 2014-11-07 02:06 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,968 |
by lanselibai Tue, 2014-11-11 04:42 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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6,210 |
by lanselibai Tue, 2014-11-11 15:28 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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7,869 |
by lanselibai Wed, 2014-11-12 11:17 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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2,240 |
by rmoretti Tue, 2014-11-18 09:10 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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5,424 |
by AmelieH Wed, 2014-11-19 11:26 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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5,192 |
by lanselibai Thu, 2014-11-20 02:15 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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6,169 |
by rmoretti Thu, 2014-11-20 10:46 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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6,198 |
by brianmlee Mon, 2014-11-24 19:40 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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6,382 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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5,075 |
by zcrook Tue, 2014-11-25 10:27 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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2,154 |
by rmoretti Wed, 2014-11-26 07:51 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,875 |
by max Thu, 2014-11-27 02:56 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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7,254 |
by lanselibai Tue, 2014-12-02 09:43 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
18 |
24,694 |
by lanselibai Tue, 2014-12-02 09:46 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,417 |
by fred Wed, 2014-12-03 12:28 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,680 |
by rmoretti Wed, 2014-12-03 19:07 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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24,431 |
by jfeuva Tue, 2014-12-09 14:49 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,435 |
by yigallah Mon, 2014-12-15 08:46 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,882 |
by rmoretti Fri, 2015-01-02 09:43 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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2,070 |
by rmoretti Fri, 2015-01-02 11:06 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,204 |
by rmoretti Fri, 2015-01-02 11:45 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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10,930 |
by lanselibai Sat, 2015-01-03 08:18 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,674 |
by lanselibai Sun, 2015-01-11 10:50 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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2,146 |
by rmoretti Tue, 2015-01-13 07:44 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,692 |
by lanselibai Tue, 2015-01-13 14:25 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,535 |
by lanselibai Sat, 2015-01-17 07:57 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
0 |
1,437 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,953 |
by cossio Mon, 2015-01-19 07:10 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,764 |
by cossio Mon, 2015-01-19 07:14 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
1 |
3,195 |
by lanselibai Wed, 2015-01-21 02:40 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,950 |
by rmoretti Mon, 2015-01-26 12:15 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,088 |
by attesor Tue, 2015-01-27 02:20 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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20,592 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,278 |
by lanselibai Thu, 2015-01-29 00:50 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
5 |
5,292 |
by rmoretti Mon, 2015-02-09 12:04 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,360 |
by rmoretti Mon, 2015-02-09 12:33 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
5,935 |
by felipet Wed, 2015-02-11 05:13 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,906 |
by lanselibai Tue, 2015-02-24 02:36 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
3,074 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
6,400 |
by lanselibai Sun, 2015-03-01 15:00 |
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