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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
1,429 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
992 by vmulligan
Fri, 2020-04-10 02:54
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,276 by rmoretti
Tue, 2016-07-12 08:56
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,577 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
222 by Astghik
Thu, 2020-12-03 02:35
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,110 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
1,024 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
5
638 by mieczyslaw
Thu, 2020-10-29 07:52
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
623 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,021 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
6,402 by belousoff
Mon, 2017-06-26 16:46
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
2,526 by maxebert
Mon, 2014-04-21 06:47
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,571 by lanselibai
Tue, 2015-02-24 02:36
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
404 by Ruska322
Sat, 2019-09-07 05:21
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
1,729 by rmoretti
Fri, 2018-11-23 11:23
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
4,872 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
215 by almeida85
Mon, 2020-08-31 07:17
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
2,824 by rmoretti
Thu, 2017-08-24 08:19
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,316 by attesor
Tue, 2015-01-27 02:20
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,358 by everyday847
Sun, 2014-09-28 21:16
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,702 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,024 by rmoretti
Fri, 2017-04-21 07:41
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
310 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
2,507 by Pernille
Thu, 2014-07-03 07:21
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,354 by Pernille
Fri, 2014-06-20 00:17
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
30,991 by rmoretti
Fri, 2018-05-18 12:35
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,101 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,233 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
192 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,137 by Derek
Wed, 2016-04-27 01:31
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,561 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
1,841 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
698 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
957 by Marius1987
Sun, 2016-04-10 12:09
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
4,329 by albumns
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,431 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,028 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
5,350 by Anonymous
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
9,508 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
3,807 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,763 by kamau
Wed, 2014-09-24 11:35
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
8,058 by kamau
Mon, 2014-09-22 09:39
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,354 by rmoretti
Tue, 2015-11-24 16:16
Normal topic fixing sequence during grafting in antibody_designer
by COM » Fri, 2020-01-24 11:38
1
462 by jadolfbr
Tue, 2020-01-28 09:13
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,963 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,027 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,160 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
3,775 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
4,321 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
2,411 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
103 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,202 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
1,756 by cam11
Wed, 2014-08-13 10:06
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
2,709 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
2,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,831 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
493 by mbakalar
Fri, 2018-08-31 13:06
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
615 by evo_umich
Mon, 2018-04-02 12:13
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
194 by jlawrie
Tue, 2020-09-15 12:52
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,388 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,626 by ays
Tue, 2014-09-30 08:31
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
280 by jcampecino
Wed, 2020-05-13 12:22
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,037 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
4,281 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
903 by tiagogomes89
Mon, 2015-01-19 02:45
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
10,667 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
2,619 by felipet
Mon, 2014-04-21 06:47
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,067 by smlewis
Fri, 2016-11-11 08:33
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
1,505 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
2,151 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,723 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
5,256 by smlewis
Mon, 2014-04-21 06:47
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,357 by danielles
Mon, 2014-04-21 06:47
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
2,543 by rmoretti
Fri, 2015-06-19 13:53
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
5,150 by smlewis
Fri, 2017-09-08 09:16
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
2,169 by dgront
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
2,324 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
4,229 by yarovoy
Mon, 2014-04-21 06:47
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
990 by alex
Sun, 2017-02-19 08:12
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
6,776 by smlewis
Wed, 2016-08-17 07:56
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
2,114 by exchhattu
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,244 by David Hoover
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
3,021 by gw
Mon, 2014-04-21 06:47
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
7,875 by starone
Fri, 2016-06-24 18:29
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,248 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
902 by achambe
Mon, 2016-01-04 11:26
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
11,953 by skovacs
Mon, 2014-04-21 06:47
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
242 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
2,630 by jrcf
Mon, 2015-10-05 21:32
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
2,499 by deltag
Mon, 2014-04-21 06:47
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,121 by smlewis
Wed, 2016-03-09 04:11
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
442 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
1,396 by smlewis
Tue, 2017-08-15 23:19
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
213 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
1,864 by lanselibai
Tue, 2014-11-11 04:42
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
820 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
2,600 by jessye
Fri, 2017-11-03 20:15
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
2,874 by protos_heis
Tue, 2014-08-05 12:47
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