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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
912 by rmoretti
Mon, 2017-05-15 08:54
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,034 by rmoretti
Thu, 2017-04-27 07:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,289 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
905 by rmoretti
Fri, 2017-04-21 07:41
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
1,464 by sn
Thu, 2017-04-20 21:43
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
1,849 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
4,956 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,018 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
1,839 by MJG
Tue, 2017-04-04 23:59
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
1,569 by rmoretti
Tue, 2017-03-28 08:51
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
862 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
1,946 by brspurri
Fri, 2017-03-24 11:35
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
2,134 by attesor
Thu, 2017-03-16 01:21
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
2,338 by David Weis
Mon, 2017-03-13 10:59
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
1,186 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
1,527 by David Weis
Mon, 2017-03-13 06:40
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
1,543 by bogac
Tue, 2017-03-07 02:11
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
830 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
1,485 by sn
Mon, 2017-03-06 10:03
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
1,837 by jhm13c
Thu, 2017-03-02 12:01
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
1,617 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,212 by smlewis
Tue, 2017-02-21 14:10
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
926 by smlewis
Tue, 2017-02-21 07:58
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
2,401 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
914 by alex
Sun, 2017-02-19 08:12
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
1,684 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
1,562 by smlewis
Wed, 2017-02-15 07:43
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
826 by smlewis
Thu, 2017-02-09 21:50
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,156 by smlewis
Mon, 2017-02-06 20:46
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
928 by smlewis
Mon, 2017-02-06 06:57
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
1,648 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,304 by smlewis
Fri, 2017-01-27 07:20
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
2,934 by rmoretti
Mon, 2017-01-23 08:52
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,487 by smlewis
Mon, 2017-01-23 06:26
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,054 by smlewis
Fri, 2017-01-20 08:14
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
2,524 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,027 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,212 by rmoretti
Wed, 2017-01-11 13:00
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
4,635 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
718 by ac.research
Mon, 2017-01-09 00:59
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
969 by smlewis
Fri, 2016-12-23 07:04
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,334 by bp
Thu, 2016-12-22 07:54
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
1,313 by msardejani
Mon, 2016-12-12 17:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,246 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
983 by smlewis
Thu, 2016-12-08 15:50
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
620 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
1,230 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
5,033 by cossio
Mon, 2016-11-21 07:56
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
979 by smlewis
Fri, 2016-11-11 08:33
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,195 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,309 by rmoretti
Fri, 2016-10-14 08:42
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
3,427 by msardejani
Sat, 2016-10-01 12:55
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
2,054 by rmoretti
Wed, 2016-09-14 02:05
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
1,716 by banshee
Mon, 2016-09-12 23:41
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
2,996 by ks
Mon, 2016-09-12 03:14
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,188 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,414 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,484 by rmoretti
Mon, 2016-09-05 11:10
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
2,658 by rmoretti
Mon, 2016-09-05 10:59
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
6,244 by smlewis
Wed, 2016-08-17 07:56
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,376 by aep
Sat, 2016-08-13 13:03
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,477 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,253 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,281 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
2,705 by rmoretti
Tue, 2016-07-12 09:35
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
2,421 by rmoretti
Tue, 2016-07-12 09:30
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,016 by rmoretti
Tue, 2016-07-12 09:05
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,181 by rmoretti
Tue, 2016-07-12 08:56
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,262 by aep
Fri, 2016-07-01 06:54
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
7,229 by starone
Fri, 2016-06-24 18:29
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
1,198 by rmoretti
Thu, 2016-06-23 10:55
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
4,873 by linucks
Mon, 2016-06-20 12:02
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
2,393 by rmoretti
Fri, 2016-06-17 10:36
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,033 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
7,257 by rmoretti
Fri, 2016-06-17 10:22
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,339 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,005 by Sandy
Tue, 2016-05-31 18:48
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
2,952 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,497 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
2,233 by smlewis
Mon, 2016-05-02 08:20
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,078 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
8,000 by rmoretti
Fri, 2016-04-29 08:57
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,461 by rmoretti
Fri, 2016-04-29 08:26
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
9,558 by rmoretti
Thu, 2016-04-28 16:43
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,033 by Derek
Wed, 2016-04-27 01:31
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
890 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,175 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
2,503 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,357 by Marius1987
Mon, 2016-03-14 04:34
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
1,948 by dee2711453
Fri, 2016-03-11 21:32
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,036 by smlewis
Wed, 2016-03-09 04:11
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
782 by aaj
Fri, 2016-02-26 08:40
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,250 by rmoretti
Wed, 2016-02-24 14:39
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,401 by aaj
Wed, 2016-02-24 07:37
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,450 by jrcf
Mon, 2016-02-15 17:59
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
1,992 by jrcf
Fri, 2016-02-12 16:42
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
4,395 by Marius1987
Fri, 2016-02-05 07:20
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
2,705 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,832 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,465 by Ryhon Wang
Mon, 2016-01-04 19:59
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