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Rosetta 3 - Applications

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Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,293 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,081 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
1,666 by ahonegger
Mon, 2014-05-12 09:08
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
1,871 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,442 by smlewis
Mon, 2014-05-12 08:32
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,578 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
6,206 by rmoretti
Thu, 2014-04-24 14:43
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
3,393 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
1,616 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
3,622 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,515 by fred
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
2,553 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
1,623 by fred
Mon, 2014-04-21 06:48
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
1,472 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
1,991 by rmoretti
Mon, 2014-04-21 06:48
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
2,791 by tfliu
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,423 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
2,754 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
2,748 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
2,511 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,726 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
1
1,684 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
3,324 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
3,525 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,444 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
1,732 by Ashafix
Mon, 2014-04-21 06:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,373 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
1,637 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,378 by smlewis
Mon, 2014-04-21 06:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
2,035 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
3
2,295 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
2,551 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
1,940 by mumdonar
Mon, 2014-04-21 06:48
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,298 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
2,806 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
3,232 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
2,970 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,280 by smlewis
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
2,611 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,328 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,596 by smlewis
Mon, 2014-04-21 06:48
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,652 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
8
4,407 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
7,266 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
1,887 by rmoretti
Mon, 2014-04-21 06:48
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
1,515 by tfliu
Mon, 2014-04-21 06:48
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
1,398 by rmoretti
Mon, 2014-04-21 06:48
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
5,453 by rmoretti
Mon, 2014-04-21 06:48
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,332 by nawsad
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
5,306 by Run
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
2,135 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,278 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,404 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
2,436 by Ryhon Wang
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
8,276 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
2,526 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,346 by rmoretti
Mon, 2014-04-21 06:48
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,055 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
2,013 by agulsevin
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
1,961 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
1,899 by smlewis
Mon, 2014-04-21 06:48
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
2,168 by rmoretti
Mon, 2014-04-21 06:48
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
1,746 by ast
Mon, 2014-04-21 06:48
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,230 by ytao
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
1,572 by ast
Mon, 2014-04-21 06:48
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,287 by rmoretti
Mon, 2014-04-21 06:48
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,273 by smlewis
Mon, 2014-04-21 06:48
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
6
3,668 by tigerous
Mon, 2014-04-21 06:48
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
2,630 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
1,737 by rmoretti
Mon, 2014-04-21 06:48
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
2,267 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
3,322 by jarod
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
6,874 by Basantab
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
1,560 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
1,857 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
2,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
5,686 by jarod
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
2,871 by brspurri
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
1,990 by aloshbau
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
2,367 by rmoretti
Mon, 2014-04-21 06:47
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
1,570 by jarod
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
1,883 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,183 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
2,345 by rmoretti
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,265 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
2,210 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
2,948 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
2,061 by rmoretti
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
3,142 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
1,968 by jarod
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
969 by nawsad
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
3,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
2,431 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
3,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
3,367 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
1,998 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
1,657 by smlewis
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
1,651 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
1,385 by weehee
Mon, 2014-04-21 06:47
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