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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
1,945 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
3,248 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
3,448 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,410 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
1,699 by Ashafix
Mon, 2014-04-21 06:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,347 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
1,574 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,345 by smlewis
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
2,672 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
2,451 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,683 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
1
1,633 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,245 by smlewis
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
2,532 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,293 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,563 by smlewis
Mon, 2014-04-21 06:48
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,614 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
8
4,235 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
7,021 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
1,962 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
3
2,210 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
2,472 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
1,867 by mumdonar
Mon, 2014-04-21 06:48
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,263 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
2,705 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
3,103 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
2,846 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
2,075 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,251 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,352 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
2,349 by Ryhon Wang
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
7,889 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
1,819 by rmoretti
Mon, 2014-04-21 06:48
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
1,481 by tfliu
Mon, 2014-04-21 06:48
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
1,367 by rmoretti
Mon, 2014-04-21 06:48
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
5,294 by rmoretti
Mon, 2014-04-21 06:48
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,302 by nawsad
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
5,069 by Run
Mon, 2014-04-21 06:48
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
1,696 by ast
Mon, 2014-04-21 06:48
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,208 by ytao
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
1,520 by ast
Mon, 2014-04-21 06:48
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,259 by rmoretti
Mon, 2014-04-21 06:48
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,247 by smlewis
Mon, 2014-04-21 06:48
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
6
3,561 by tigerous
Mon, 2014-04-21 06:48
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
2,550 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
1,682 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
2,453 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,271 by rmoretti
Mon, 2014-04-21 06:48
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,018 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
1,941 by agulsevin
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
1,919 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
1,851 by smlewis
Mon, 2014-04-21 06:48
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
2,131 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
2,310 by rmoretti
Mon, 2014-04-21 06:47
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
1,541 by jarod
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
1,829 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
2,274 by rmoretti
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,236 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
2,138 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
2,851 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
1,995 by rmoretti
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
2,999 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
1,909 by jarod
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
2,205 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
3,209 by jarod
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
6,671 by Basantab
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
1,525 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
1,798 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
2,217 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
5,480 by jarod
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
2,786 by brspurri
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
1,938 by aloshbau
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
1,585 by smlewis
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
1,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
1,341 by weehee
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
6,510 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
1,087 by ronj
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
2,649 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
1,141 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,132 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
937 by nawsad
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
3,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
2,361 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
3,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
3,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
1,926 by rmoretti
Mon, 2014-04-21 06:47
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
3,124 by benniu2004
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
2,577 by smlewis
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
1,374 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
1,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
1,575 by aroop
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
2,240 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
3,553 by deltag
Mon, 2014-04-21 06:47
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
7,011 by aroop
Mon, 2014-04-21 06:47
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12
11
3,594 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
5,375 by deltag
Mon, 2014-04-21 06:47
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
2,662 by dktest
Mon, 2014-04-21 06:47
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