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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
1,505 by rmoretti
Mon, 2014-08-04 14:51
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,333 by franfdez
Mon, 2014-07-28 01:04
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
870 by rmoretti
Sun, 2014-07-27 10:48
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,066 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,071 by felipet
Thu, 2014-07-17 10:13
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
994 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
1,652 by Pernille
Thu, 2014-07-03 07:21
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
2,204 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
603 by felipet
Wed, 2014-07-02 10:23
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
1,442 by felipet
Wed, 2014-07-02 07:26
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
915 by Pernille
Fri, 2014-06-20 00:17
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
1,704 by rmoretti
Tue, 2014-06-17 08:51
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
1,424 by attesor
Mon, 2014-06-16 07:34
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
1,336 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
1,934 by kxiao
Thu, 2014-06-05 08:37
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,063 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
641 by msk
Tue, 2014-06-03 11:09
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
970 by rmoretti
Mon, 2014-05-26 09:29
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
3,042 by afmo
Thu, 2014-05-22 01:19
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
1,789 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,332 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,123 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
1,709 by ahonegger
Mon, 2014-05-12 09:08
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
1,927 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,482 by smlewis
Mon, 2014-05-12 08:32
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,630 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
6,428 by rmoretti
Thu, 2014-04-24 14:43
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
3,509 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
1,654 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
3,716 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,582 by fred
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
2,630 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
1,660 by fred
Mon, 2014-04-21 06:48
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
1,520 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,049 by rmoretti
Mon, 2014-04-21 06:48
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
2,887 by tfliu
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,454 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
2,817 by rmoretti
Mon, 2014-04-21 06:48
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
1,694 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,409 by smlewis
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
2,838 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
2,567 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,768 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
3,407 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
3,639 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,492 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
1,779 by Ashafix
Mon, 2014-04-21 06:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,402 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
2,097 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
3
2,381 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
2,644 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
2,011 by mumdonar
Mon, 2014-04-21 06:48
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,327 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
2,908 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
3,342 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
3,085 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,309 by smlewis
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
2,677 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,367 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,631 by smlewis
Mon, 2014-04-21 06:48
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,698 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
8
4,564 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
7,554 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
8,587 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
1,964 by rmoretti
Mon, 2014-04-21 06:48
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
1,564 by tfliu
Mon, 2014-04-21 06:48
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
1,431 by rmoretti
Mon, 2014-04-21 06:48
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
5,585 by rmoretti
Mon, 2014-04-21 06:48
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,366 by nawsad
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
5,524 by Run
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
2,187 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,307 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,464 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
2,534 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
2,586 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,416 by rmoretti
Mon, 2014-04-21 06:48
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,107 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
2,086 by agulsevin
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,011 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
1,945 by smlewis
Mon, 2014-04-21 06:48
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
2,241 by rmoretti
Mon, 2014-04-21 06:48
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
1,807 by ast
Mon, 2014-04-21 06:48
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,260 by ytao
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
1,617 by ast
Mon, 2014-04-21 06:48
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,326 by rmoretti
Mon, 2014-04-21 06:48
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,300 by smlewis
Mon, 2014-04-21 06:48
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
6
3,777 by tigerous
Mon, 2014-04-21 06:48
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
2,712 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
1,797 by rmoretti
Mon, 2014-04-21 06:48
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
3,275 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
2,044 by jarod
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,370 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
2,322 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
3,419 by jarod
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
7,057 by Basantab
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
1,605 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
1,907 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
2,355 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
5,851 by jarod
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
2,973 by brspurri
Mon, 2014-04-21 06:47
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