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Rosetta 3 - Applications
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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2,429 |
by cossio Tue, 2015-01-20 06:40 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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2,790 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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1,713 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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793 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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376 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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2,794 |
by jarod Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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1,825 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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474 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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1,912 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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575 |
by chrisHKL Thu, 2020-03-05 09:11 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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2,681 |
by harshkhare Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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1,617 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,202 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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484 |
by bjharris Thu, 2020-07-02 11:09 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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3,166 |
by sacch Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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1,701 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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463 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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2,611 |
by felipet Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
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2,059 |
by mpacella Mon, 2014-04-21 06:47 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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2,599 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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2,505 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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1,841 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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1,298 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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660 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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498 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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1,901 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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1,941 |
by mintseris Wed, 2015-06-24 22:04 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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2,226 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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1,232 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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1,887 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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1,689 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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573 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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1,767 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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384 |
by jlawrie Wed, 2020-08-12 08:57 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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2,362 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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663 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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2,757 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,004 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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404 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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3,478 |
by frichter Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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1,672 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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410 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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2,311 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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2,399 |
by jrcf Mon, 2015-09-21 11:10 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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3,563 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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1,176 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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490 |
by cm21 Wed, 2020-05-20 11:22 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
3,884 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
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2,643 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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2,770 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
1,828 |
by brspurri Thu, 2017-06-01 10:58 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
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2,821 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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255 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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196 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
2,113 |
by exchhattu Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,267 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
2,561 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
1,477 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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410 |
by scyphs Mon, 2020-08-10 08:09 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
2,522 |
by maxebert Mon, 2014-04-21 06:47 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
1,874 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
1,634 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
1,009 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
879 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,268 |
by sacch Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,116 |
by smlewis Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
2,857 |
by agulsevin Mon, 2014-04-21 06:48 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
1,473 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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814 |
by mags33 Wed, 2019-11-06 09:35 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
2,438 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
1,626 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
1,057 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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469 |
by brspurri Thu, 2020-05-14 12:24 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,149 |
by lchen Mon, 2014-04-21 06:47 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
2,666 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
1,068 |
by gszwabowski Wed, 2019-06-26 10:25 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
1,038 |
by dnamkr Mon, 2019-12-30 11:43 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
222 |
by Astghik Thu, 2020-12-03 02:35 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
2,768 |
by eskici Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
1,173 |
by cossio Sun, 2018-03-11 09:12 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
2,156 |
by rlwoltz Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
2,221 |
by krlitros87 Wed, 2014-10-22 09:31 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
1,738 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
1,472 |
by bp Thu, 2016-12-22 07:54 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
899 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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474 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
2,154 |
by MajorID Mon, 2014-04-21 06:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
2 |
389 |
by jlawrie Wed, 2020-08-12 07:27 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
1,639 |
by sn Thu, 2017-04-20 21:43 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
825 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
381 |
by jlawrie Thu, 2020-08-20 11:00 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
1,653 |
by eyong123 Wed, 2015-04-22 11:33 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
1,374 |
by aep Fri, 2016-07-01 06:54 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,066 |
by dnamkr Thu, 2019-12-26 10:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
557 |
by lanselibai Tue, 2020-05-12 20:25 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
2 |
257 |
by tylerborrman Tue, 2021-02-09 16:33 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
3,209 |
by jingwei xu Wed, 2016-05-04 23:28 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
2 |
587 |
by ylwang Thu, 2020-03-12 20:42 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
2 |
3,516 |
by zcrook Tue, 2014-11-25 10:27 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
1,946 |
by cossio Tue, 2015-09-15 12:48 |
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