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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort descending
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,508 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
1,795 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
4,168 by lanselibai
Sun, 2015-03-01 15:00
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
1,988 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
1,863 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
1,791 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,678 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
2,208 by jennifer
Fri, 2015-03-27 05:56
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
2,839 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,014 by rmoretti
Tue, 2015-03-31 08:56
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
4,276 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,079 by jennifer
Wed, 2015-04-08 05:29
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
2,299 by rmoretti
Thu, 2015-04-16 10:38
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
4,526 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
2,453 by dswhit
Tue, 2015-04-21 10:14
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,617 by eyong123
Wed, 2015-04-22 11:33
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
3,963 by rmoretti
Fri, 2015-04-24 12:02
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,108 by Wizard
Sun, 2015-04-26 22:36
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,076 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,655 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
3,405 by rmoretti
Thu, 2015-04-30 16:46
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
1,722 by rmoretti
Mon, 2015-05-25 11:30
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,104 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,429 by rmoretti
Mon, 2015-05-25 12:30
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,298 by rmoretti
Mon, 2015-05-25 12:37
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,293 by chelsell
Wed, 2015-05-27 14:36
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,410 by mtyras
Mon, 2015-06-08 03:18
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,194 by smlewis
Mon, 2015-06-08 06:35
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
5,432 by protos_heis
Mon, 2015-06-08 07:00
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
2,495 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
1,387 by rmoretti
Sat, 2015-06-20 20:07
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
2,618 by beowulfey
Tue, 2015-06-23 16:10
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
1,898 by mintseris
Wed, 2015-06-24 22:04
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
4,576 by eyong123
Mon, 2015-06-29 04:44
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,356 by rmoretti
Fri, 2015-07-03 14:41
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
2,084 by rmoretti
Sat, 2015-07-11 13:38
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,592 by rmoretti
Tue, 2015-07-14 14:59
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
1,246 by rmoretti
Thu, 2015-08-06 08:57
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
1,835 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
1,282 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
4,418 by rmoretti
Tue, 2015-08-18 16:47
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,281 by sgourn
Tue, 2015-08-18 18:25
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
1,781 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
2,644 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
4,970 by rmoretti
Wed, 2015-09-02 12:43
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
2,689 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
1,825 by rmoretti
Fri, 2015-09-04 10:25
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,234 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,264 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,489 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
8,682 by rmoretti
Fri, 2015-09-11 13:27
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
1,899 by cossio
Tue, 2015-09-15 12:48
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
2,097 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,326 by jrcf
Mon, 2015-09-21 11:10
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,692 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,361 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
11,011 by rmoretti
Mon, 2015-09-28 15:00
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,430 by rmoretti
Fri, 2015-10-02 12:30
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
2,560 by jrcf
Mon, 2015-10-05 21:32
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
4,506 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,439 by rmoretti
Mon, 2015-10-12 15:20
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
5,431 by attesor
Wed, 2015-10-21 13:53
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,085 by smlewis
Thu, 2015-10-22 08:04
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,566 by attesor
Mon, 2015-10-26 09:01
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,379 by rmoretti
Sat, 2015-10-31 08:57
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
4,171 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,119 by rmoretti
Tue, 2015-11-10 11:10
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
2,494 by rmoretti
Tue, 2015-11-10 11:35
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,826 by attesor
Tue, 2015-11-17 07:36
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,514 by rosend
Tue, 2015-11-17 12:12
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
4,799 by rmoretti
Tue, 2015-11-24 15:30
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,461 by rmoretti
Tue, 2015-11-24 16:07
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,315 by rmoretti
Tue, 2015-11-24 16:16
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
2,735 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
5,119 by eyong123
Wed, 2015-12-09 07:17
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,197 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
874 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,635 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,916 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
2,835 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
4,604 by Marius1987
Fri, 2016-02-05 07:20
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,096 by jrcf
Fri, 2016-02-12 16:42
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,537 by jrcf
Mon, 2016-02-15 17:59
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,489 by aaj
Wed, 2016-02-24 07:37
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,311 by rmoretti
Wed, 2016-02-24 14:39
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
825 by aaj
Fri, 2016-02-26 08:40
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,088 by smlewis
Wed, 2016-03-09 04:11
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,074 by dee2711453
Fri, 2016-03-11 21:32
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,477 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
2,625 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,248 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
931 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,095 by Derek
Wed, 2016-04-27 01:31
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
10,019 by rmoretti
Thu, 2016-04-28 16:43
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,545 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
8,254 by rmoretti
Fri, 2016-04-29 08:57
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,153 by rmoretti
Fri, 2016-04-29 09:21
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
2,350 by smlewis
Mon, 2016-05-02 08:20
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,591 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,104 by jingwei xu
Wed, 2016-05-04 23:28
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