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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
1,617 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
643 by smlewis
Wed, 2018-08-08 15:48
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
2,508 by lzx32
Mon, 2014-04-21 06:47
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
1,218 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
509 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
962 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
2,878 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
2,327 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
3,667 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
1,705 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
2,233 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,043 by rmoretti
Mon, 2015-05-25 12:30
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
6,361 by lanselibai
Fri, 2014-11-07 02:06
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
2,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,485 by smlewis
Mon, 2014-04-21 06:48
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
2,554 by smlewis
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
2,968 by siciliu
Thu, 2014-04-10 09:50
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
1,843 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
2,488 by ytao
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,356 by fglaser
Mon, 2014-04-21 06:47
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
435 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
1,538 by chelsell
Wed, 2014-10-08 12:25
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,373 by smlewis
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
296 by jlapin
Wed, 2018-08-01 07:15
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
1,438 by ytao
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
7,535 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
1,817 by alexn
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,195 by lanselibai
Thu, 2015-01-29 00:50
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,735 by fred
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
5,251 by lanselibai
Wed, 2014-10-01 02:13
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
54 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
1
140 by rmoretti
Fri, 2019-03-29 13:06
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
2,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
1,804 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
205 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
253 by smlewis
Wed, 2018-12-12 16:51
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
573 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,295 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
1,899 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
1,724 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
796 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
1,988 by nkemjika
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
4,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
524 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,382 by brspurri
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
487 by tsztain
Tue, 2018-12-11 13:41
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,067 by rmoretti
Tue, 2015-07-14 14:59
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
3,705 by jarod
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
496 by rmoretti
Thu, 2017-08-03 09:29
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
1,192 by jhm13c
Thu, 2017-03-02 12:01
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
2,150 by eskici
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
2,721 by yogeshkd
Mon, 2014-04-21 06:47
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
30,240 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
843 by smlewis
Thu, 2018-06-14 10:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
610 by tong
Sun, 2018-06-24 23:30
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
0
21 by ValentinaSora
Mon, 2019-05-20 05:59
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
3,109 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
273 by smlewis
Mon, 2018-10-15 08:42
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
6
4,055 by tigerous
Mon, 2014-04-21 06:48
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
792 by rmoretti
Tue, 2017-04-25 06:41
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
1,710 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
5,597 by rmoretti
Fri, 2016-06-17 10:22
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
722 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
1,483 by jrcf
Fri, 2016-02-12 16:42
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
4
2,458 by rmoretti
Fri, 2016-04-29 07:49
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
1,569 by jrcf
Mon, 2015-09-21 11:10
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
1,715 by fred
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,464 by smlewis
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
1,394 by rmoretti
Thu, 2014-03-13 08:04
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
4,409 by ast
Thu, 2014-03-13 07:17
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
389 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,067 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
2,914 by rmoretti
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
3,639 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
558 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
808 by smlewis
Fri, 2017-01-27 07:20
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
2,101 by Anonymous
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
4,438 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
4,779 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
2,119 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
542 by rmoretti
Thu, 2017-05-18 13:51
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
3,237 by brspurri
Mon, 2014-04-21 06:47
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
209 by smlewis
Fri, 2018-07-27 13:32
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
1,954 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
0
297 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
1,967 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
2,074 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
789 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
1,744 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
929 by sn
Mon, 2017-03-06 10:03
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
1,568 by attesor
Mon, 2014-06-16 07:34
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
462 by rmoretti
Fri, 2017-09-15 13:11
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
397 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
1,945 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
1,992 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
2,540 by felipet
Wed, 2015-02-11 05:13
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
156 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
2,128 by kxiao
Thu, 2014-06-05 08:37
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,449 by franfdez
Mon, 2014-07-28 01:04
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