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Rosetta 3 - Applications
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
1,738 |
by JadAbbass Mon, 2014-04-21 06:48 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
2,371 |
by ytao Mon, 2014-04-21 06:47 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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1,297 |
by fglaser Mon, 2014-04-21 06:47 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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374 |
by bharat_46010 Mon, 2017-03-13 22:39 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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1,460 |
by chelsell Wed, 2014-10-08 12:25 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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1,324 |
by smlewis Mon, 2014-04-21 06:48 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
201 |
by jlapin Wed, 2018-08-01 07:15 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
1,353 |
by ytao Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
7,129 |
by smlewis Mon, 2014-04-21 06:47 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
1,723 |
by alexn Mon, 2014-04-21 06:47 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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1,103 |
by lanselibai Thu, 2015-01-29 00:50 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
2,632 |
by fred Mon, 2014-04-21 06:48 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
4,999 |
by lanselibai Wed, 2014-10-01 02:13 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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36 |
by BuddySphinx Mon, 2018-12-31 16:22 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
2,546 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
1,670 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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78 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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87 |
by smlewis Wed, 2018-12-12 16:51 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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482 |
by rmoretti Mon, 2017-05-15 08:54 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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1,240 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
1,752 |
by rmoretti Mon, 2016-09-05 10:59 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
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1,642 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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1,903 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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583 |
by hzhekova Tue, 2018-01-16 10:31 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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1,882 |
by nkemjika Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
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3,892 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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398 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
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1,331 |
by brspurri Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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236 |
by tsztain Tue, 2018-12-11 13:41 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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992 |
by rmoretti Tue, 2015-07-14 14:59 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
3,509 |
by jarod Mon, 2014-04-21 06:47 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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416 |
by rmoretti Thu, 2017-08-03 09:29 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
1,036 |
by jhm13c Thu, 2017-03-02 12:01 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
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2,039 |
by eskici Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
2,589 |
by yogeshkd Mon, 2014-04-21 06:47 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
28,575 |
by rmoretti Fri, 2018-05-18 12:40 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
557 |
by smlewis Thu, 2018-06-14 10:26 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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396 |
by tong Sun, 2018-06-24 23:30 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
2,917 |
by Anonymous Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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133 |
by smlewis Mon, 2018-10-15 08:42 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
6 |
3,866 |
by tigerous Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
687 |
by rmoretti Tue, 2017-04-25 06:41 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
1,638 |
by jarod Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
5,272 |
by rmoretti Fri, 2016-06-17 10:22 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
671 |
by rmoretti Fri, 2016-06-17 10:24 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
1,367 |
by jrcf Fri, 2016-02-12 16:42 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
4 |
2,324 |
by rmoretti Fri, 2016-04-29 07:49 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
1,483 |
by jrcf Mon, 2015-09-21 11:10 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
1,585 |
by fred Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
1,399 |
by smlewis Mon, 2014-04-21 06:47 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
1,310 |
by rmoretti Thu, 2014-03-13 08:04 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
4,184 |
by ast Thu, 2014-03-13 07:17 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
311 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
1,008 |
by rmoretti Mon, 2015-02-09 12:33 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
2,743 |
by rmoretti Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
3,399 |
by rmoretti Mon, 2014-04-21 06:47 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
472 |
by rmoretti Mon, 2017-07-03 09:17 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
703 |
by smlewis Fri, 2017-01-27 07:20 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
1,974 |
by Anonymous Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
4,262 |
by rmoretti Mon, 2014-04-21 06:47 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
4,473 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
2,003 |
by smlewis Mon, 2014-04-21 06:47 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
470 |
by rmoretti Thu, 2017-05-18 13:51 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
3,053 |
by brspurri Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
138 |
by smlewis Fri, 2018-07-27 13:32 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
1,847 |
by rmoretti Mon, 2014-04-21 06:48 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
0 |
240 |
by Neeraj Wed, 2018-01-03 02:24 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
1,872 |
by loreseeker Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
1,957 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
741 |
by shaunmk Mon, 2015-04-27 02:33 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
1,606 |
by rmoretti Wed, 2015-09-02 12:33 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
816 |
by sn Mon, 2017-03-06 10:03 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
1,466 |
by attesor Mon, 2014-06-16 07:34 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
381 |
by rmoretti Fri, 2017-09-15 13:11 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
328 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
1,854 |
by ic3reyes Mon, 2014-04-21 06:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
1,853 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
2,396 |
by felipet Wed, 2015-02-11 05:13 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
83 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
1,993 |
by kxiao Thu, 2014-06-05 08:37 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
1,372 |
by franfdez Mon, 2014-07-28 01:04 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
106 |
by jadolfbr Fri, 2018-11-09 14:28 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
1,602 |
by sacch Mon, 2014-04-21 06:47 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
2,141 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
3,740 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
3,506 |
by linucks Mon, 2016-06-20 12:02 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
839 |
by rmoretti Fri, 2016-10-14 08:42 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
883 |
by rmoretti Thu, 2014-08-28 09:42 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
76 |
by rmoretti Wed, 2018-11-21 15:31 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
2,777 |
by jljbbc Mon, 2014-04-21 06:47 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
1,750 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
1,166 |
by smlewis Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
1,533 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
2,138 |
by xfliu Mon, 2014-04-21 06:47 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
936 |
by rmoretti Thu, 2014-10-23 13:55 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
0 |
167 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
2,078 |
by mumdonar Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
1,857 |
by smlewis Mon, 2014-04-21 06:47 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
3,590 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
960 |
by rmoretti Thu, 2017-04-20 13:59 |
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