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Rosetta 3 - Applications
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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1,617 |
by rmoretti Tue, 2016-07-12 09:41 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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643 |
by smlewis Wed, 2018-08-08 15:48 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
2,508 |
by lzx32 Mon, 2014-04-21 06:47 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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1,218 |
by rmoretti Mon, 2015-05-25 11:30 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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509 |
by rmoretti Mon, 2017-03-06 12:39 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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962 |
by rmoretti Sat, 2015-06-20 20:07 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
2,878 |
by wsgosal Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
2,327 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
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3,667 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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1,705 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
2,233 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,043 |
by rmoretti Mon, 2015-05-25 12:30 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
6,361 |
by lanselibai Fri, 2014-11-07 02:06 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
2,696 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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1,485 |
by smlewis Mon, 2014-04-21 06:48 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
2,554 |
by smlewis Mon, 2014-04-21 06:47 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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2,968 |
by siciliu Thu, 2014-04-10 09:50 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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1,843 |
by JadAbbass Mon, 2014-04-21 06:48 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
2,488 |
by ytao Mon, 2014-04-21 06:47 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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1,356 |
by fglaser Mon, 2014-04-21 06:47 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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435 |
by bharat_46010 Mon, 2017-03-13 22:39 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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1,538 |
by chelsell Wed, 2014-10-08 12:25 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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1,373 |
by smlewis Mon, 2014-04-21 06:48 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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296 |
by jlapin Wed, 2018-08-01 07:15 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
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1,438 |
by ytao Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
7,535 |
by smlewis Mon, 2014-04-21 06:47 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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1,817 |
by alexn Mon, 2014-04-21 06:47 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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1,195 |
by lanselibai Thu, 2015-01-29 00:50 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
2,735 |
by fred Mon, 2014-04-21 06:48 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
5,251 |
by lanselibai Wed, 2014-10-01 02:13 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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54 |
by rmoretti Fri, 2019-04-26 12:13 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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140 |
by rmoretti Fri, 2019-03-29 13:06 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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2,702 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
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1,804 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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205 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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253 |
by smlewis Wed, 2018-12-12 16:51 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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573 |
by rmoretti Mon, 2017-05-15 08:54 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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1,295 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
1,899 |
by rmoretti Mon, 2016-09-05 10:59 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
1,724 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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2,008 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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796 |
by hzhekova Tue, 2018-01-16 10:31 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
1,988 |
by nkemjika Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
4,170 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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524 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
1,382 |
by brspurri Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
487 |
by tsztain Tue, 2018-12-11 13:41 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
1,067 |
by rmoretti Tue, 2015-07-14 14:59 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
3,705 |
by jarod Mon, 2014-04-21 06:47 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
496 |
by rmoretti Thu, 2017-08-03 09:29 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
1,192 |
by jhm13c Thu, 2017-03-02 12:01 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
2,150 |
by eskici Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
2,721 |
by yogeshkd Mon, 2014-04-21 06:47 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
30,240 |
by rmoretti Fri, 2018-05-18 12:40 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
843 |
by smlewis Thu, 2018-06-14 10:26 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
610 |
by tong Sun, 2018-06-24 23:30 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
0 |
21 |
by ValentinaSora Mon, 2019-05-20 05:59 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
3,109 |
by Anonymous Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
273 |
by smlewis Mon, 2018-10-15 08:42 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
6 |
4,055 |
by tigerous Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
792 |
by rmoretti Tue, 2017-04-25 06:41 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
1,710 |
by jarod Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
5,597 |
by rmoretti Fri, 2016-06-17 10:22 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
722 |
by rmoretti Fri, 2016-06-17 10:24 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
1,483 |
by jrcf Fri, 2016-02-12 16:42 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
4 |
2,458 |
by rmoretti Fri, 2016-04-29 07:49 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
1,569 |
by jrcf Mon, 2015-09-21 11:10 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
1,715 |
by fred Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
1,464 |
by smlewis Mon, 2014-04-21 06:47 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
1,394 |
by rmoretti Thu, 2014-03-13 08:04 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
4,409 |
by ast Thu, 2014-03-13 07:17 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
389 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
1,067 |
by rmoretti Mon, 2015-02-09 12:33 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
2,914 |
by rmoretti Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
3,639 |
by rmoretti Mon, 2014-04-21 06:47 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
558 |
by rmoretti Mon, 2017-07-03 09:17 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
808 |
by smlewis Fri, 2017-01-27 07:20 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
2,101 |
by Anonymous Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
4,438 |
by rmoretti Mon, 2014-04-21 06:47 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
4,779 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
2,119 |
by smlewis Mon, 2014-04-21 06:47 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
542 |
by rmoretti Thu, 2017-05-18 13:51 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
3,237 |
by brspurri Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
209 |
by smlewis Fri, 2018-07-27 13:32 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
1,954 |
by rmoretti Mon, 2014-04-21 06:48 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
0 |
297 |
by Neeraj Wed, 2018-01-03 02:24 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
1,967 |
by loreseeker Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
2,074 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
789 |
by shaunmk Mon, 2015-04-27 02:33 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
1,744 |
by rmoretti Wed, 2015-09-02 12:33 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
929 |
by sn Mon, 2017-03-06 10:03 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
1,568 |
by attesor Mon, 2014-06-16 07:34 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
462 |
by rmoretti Fri, 2017-09-15 13:11 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
397 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
1,945 |
by ic3reyes Mon, 2014-04-21 06:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
1,992 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
2,540 |
by felipet Wed, 2015-02-11 05:13 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
156 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
2,128 |
by kxiao Thu, 2014-06-05 08:37 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
1,449 |
by franfdez Mon, 2014-07-28 01:04 |
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