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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
6,723 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
1,589 by alexn
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,007 by lanselibai
Thu, 2015-01-29 00:50
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
2,507 by fred
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
4,715 by lanselibai
Wed, 2014-10-01 02:13
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
2,374 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
1,510 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
378 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,183 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
1,593 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
1,559 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
1,782 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
362 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
1,767 by nkemjika
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
3,571 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
218 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,267 by brspurri
Mon, 2014-04-21 06:47
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
919 by rmoretti
Tue, 2015-07-14 14:59
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
3,320 by jarod
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
327 by rmoretti
Thu, 2017-08-03 09:29
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
859 by jhm13c
Thu, 2017-03-02 12:01
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
1,916 by eskici
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
2,431 by yogeshkd
Mon, 2014-04-21 06:47
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
26,077 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
209 by smlewis
Thu, 2018-06-14 10:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
148 by tong
Sun, 2018-06-24 23:30
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
2,664 by Anonymous
Mon, 2014-04-21 06:47
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
6
3,663 by tigerous
Mon, 2014-04-21 06:48
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
579 by rmoretti
Tue, 2017-04-25 06:41
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
1,570 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
4,820 by rmoretti
Fri, 2016-06-17 10:22
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
586 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
1,246 by jrcf
Fri, 2016-02-12 16:42
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
4
2,157 by rmoretti
Fri, 2016-04-29 07:49
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
1,356 by jrcf
Mon, 2015-09-21 11:10
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
1,436 by fred
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,339 by smlewis
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
1,214 by rmoretti
Thu, 2014-03-13 08:04
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
3,921 by ast
Thu, 2014-03-13 07:17
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
216 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
953 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
2,540 by rmoretti
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
3,150 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
375 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
596 by smlewis
Fri, 2017-01-27 07:20
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
1,819 by Anonymous
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
4,029 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
4,047 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
1,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
377 by rmoretti
Thu, 2017-05-18 13:51
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
2,869 by brspurri
Mon, 2014-04-21 06:47
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
37 by smlewis
Fri, 2018-07-27 13:32
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
1,735 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
0
166 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
1,716 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
1,854 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
687 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
1,470 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
694 by sn
Mon, 2017-03-06 10:03
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
1,365 by attesor
Mon, 2014-06-16 07:34
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
276 by rmoretti
Fri, 2017-09-15 13:11
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
226 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
1,758 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
1
1,684 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
2,222 by felipet
Wed, 2015-02-11 05:13
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
1,867 by kxiao
Thu, 2014-06-05 08:37
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,270 by franfdez
Mon, 2014-07-28 01:04
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
1,457 by sacch
Mon, 2014-04-21 06:47
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,055 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
3,524 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
3,244 by linucks
Mon, 2016-06-20 12:02
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
721 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
823 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
2,581 by jljbbc
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
1,658 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,101 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
1,411 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
1,932 by xfliu
Mon, 2014-04-21 06:47
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
874 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
93 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
1,940 by mumdonar
Mon, 2014-04-21 06:48
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
1,695 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
3,264 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
802 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
1,949 by RMJ
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
6,868 by Basantab
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
2,342 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,005 by mdidonato
Wed, 2014-06-04 14:55
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
334 by dyu
Thu, 2017-09-28 18:54
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
3,818 by glemmon
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
2,947 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,443 by rmoretti
Mon, 2014-04-21 06:48
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
1,637 by xun
Mon, 2014-04-21 06:47
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
569 by cdbahl
Sat, 2017-02-18 13:02
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
2,346 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
3,445 by dimaio
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,345 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
1,269 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
2,754 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
647 by rmoretti
Tue, 2015-11-10 11:10
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