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Rosetta 3 - Applications
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,176 |
by smlewis Wed, 2016-03-09 04:11 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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513 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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1,471 |
by smlewis Tue, 2017-08-15 23:19 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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255 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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1,947 |
by lanselibai Tue, 2014-11-11 04:42 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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939 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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2,775 |
by jessye Fri, 2017-11-03 20:15 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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2,953 |
by protos_heis Tue, 2014-08-05 12:47 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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377 |
by tylerborrman Tue, 2021-02-09 16:33 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,182 |
by smlewis Thu, 2015-10-22 08:04 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,148 |
by Sandy Tue, 2016-05-31 18:48 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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450 |
by engand93 Wed, 2019-03-27 02:43 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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4,344 |
by lzx32 Mon, 2014-04-21 06:47 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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63 |
by rmoretti Thu, 2021-04-29 10:44 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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2,710 |
by rmoretti Mon, 2014-05-12 15:16 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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2,312 |
by tfliu Mon, 2014-04-21 06:48 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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783 |
by nannemdp Thu, 2019-04-25 07:58 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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1,751 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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3,588 |
by rmoretti Mon, 2014-04-21 06:47 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,212 |
by smlewis Mon, 2014-04-21 06:48 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
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12,293 |
by xpzhang Mon, 2014-04-21 06:47 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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1,949 |
by jharamesh Sat, 2015-08-08 19:51 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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3,373 |
by pdbb Mon, 2014-04-21 06:47 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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516 |
by jlawrie Wed, 2020-08-12 08:56 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,358 |
by bernhardcl Tue, 2015-08-11 09:11 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,027 |
by Derek Smith Wed, 2016-02-03 05:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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4,123 |
by rmoretti Mon, 2014-04-21 06:47 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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466 |
by danpf Fri, 2020-02-21 17:05 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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5,147 |
by lanselibai Wed, 2014-11-12 11:17 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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913 |
by asbelx Sat, 2019-06-08 17:03 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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2,431 |
by ahonegger Mon, 2014-05-12 09:08 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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3,545 |
by wangyr Mon, 2014-04-21 06:47 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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by JackMaguire Fri, 2019-08-16 07:41 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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by daniloboskovic Thu, 2020-07-16 08:14 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,338 |
by rmoretti Thu, 2015-08-06 08:57 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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by smlewis Tue, 2019-09-24 12:43 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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1,747 |
by sn Thu, 2017-04-20 21:43 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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389 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
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2,243 |
by MajorID Mon, 2014-04-21 06:47 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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520 |
by smlewis Mon, 2019-09-16 12:22 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,217 |
by lanselibai Wed, 2015-01-21 02:40 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,091 |
by smlewis Mon, 2014-04-21 06:47 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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948 |
by jadolfbr Fri, 2020-07-24 07:24 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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1,065 |
by danpf Tue, 2020-05-12 10:58 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,096 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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by Kotimedidhi Mon, 2020-06-22 16:19 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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5,772 |
by lzx32 Mon, 2014-04-21 06:47 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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662 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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1,807 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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1,980 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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3,789 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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4,784 |
by attesor Wed, 2017-06-14 07:32 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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1,205 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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3,557 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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629 |
by aloshbau Fri, 2020-01-10 16:48 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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by Sunyp_IM Sun, 2017-12-10 19:43 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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by qq7678500549 Sun, 2020-08-09 18:59 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,057 |
by rmoretti Wed, 2019-09-18 10:21 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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1,093 |
by Danielsebas Wed, 2019-09-11 00:44 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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2,341 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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9,269 |
by rmoretti Fri, 2015-09-11 13:27 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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3,735 |
by lanselibai Wed, 2014-10-15 03:52 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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3,238 |
by cossio Mon, 2015-01-19 07:10 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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2,009 |
by rmoretti Tue, 2017-10-10 09:58 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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1,589 |
by tevang Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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1,785 |
by rmoretti Thu, 2018-06-28 12:44 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,290 |
by felipet Wed, 2014-07-02 07:26 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
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6,071 |
by jfhuang Mon, 2014-04-21 06:47 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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1,457 |
by aep Fri, 2016-07-01 06:54 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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414 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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1,747 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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681 |
by lanselibai Tue, 2020-05-12 20:25 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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1,500 |
by msardejani Mon, 2016-12-12 17:48 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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358 |
by ssrb Mon, 2020-06-22 13:12 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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2,505 |
by lanselibai Mon, 2014-10-06 15:30 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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1,287 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
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7,232 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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122 |
by everyday847 Sun, 2021-04-04 12:48 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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680 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,209 |
by rmoretti Sat, 2015-07-11 13:38 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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473 |
by aloshbau Mon, 2021-03-01 20:06 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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1,909 |
by rmoretti Wed, 2017-03-01 13:10 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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69 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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690 |
by rmoretti Fri, 2019-03-29 09:45 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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320 |
by leygkn Tue, 2020-09-22 22:46 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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2,249 |
by jadolfbr Mon, 2014-04-21 06:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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4,589 |
by lanselibai Tue, 2014-12-02 09:43 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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685 |
by chenna Wed, 2020-03-04 03:24 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
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8,838 |
by jarod Mon, 2014-04-21 06:47 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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1,433 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
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4,485 |
by rpavlov Tue, 2017-06-06 11:45 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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1,808 |
by rmoretti Fri, 2014-08-15 08:06 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
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5,573 |
by rmoretti Mon, 2014-04-21 06:47 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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689 |
by rmoretti Tue, 2019-04-16 11:07 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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323 |
by ssrb Tue, 2020-09-29 12:37 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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5,452 |
by eyong123 Wed, 2015-12-09 07:17 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,370 |
by rmoretti Wed, 2014-11-26 07:51 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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606 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,408 |
by smlewis Tue, 2017-02-21 14:10 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,094 |
by smlewis Mon, 2014-04-21 06:47 |
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