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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
2,687 by jfhuang
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
1,259 by lchen
Mon, 2014-04-21 06:47
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
2,216 by Anonymous
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
1,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
2,151 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
1,231 by mdyini
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
1,490 by yperez
Mon, 2014-04-21 06:47
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
2,267 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
2,828 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
2,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
1,474 by glemmon
Mon, 2014-04-21 06:47
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
1,224 by fred
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
986 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
1,572 by sacch
Mon, 2014-04-21 06:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
1,460 by yperez
Mon, 2014-04-21 06:47
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
1,284 by yzhou
Mon, 2014-04-21 06:47
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
1,469 by dgront
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
3,190 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
2,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
840 by tevang
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
1,577 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
1,726 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
4,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
3,251 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
1,123 by smlewis
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
7,101 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
1,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
1,602 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
873 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
754 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
4,840 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
982 by smlewis
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
1,259 by cn
Mon, 2014-04-21 06:47
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
5,180 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
1,282 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
2,001 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
2,364 by franfdez
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
2,077 by justin
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
3,485 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
1,561 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
1,396 by deltag
Mon, 2014-04-21 06:47
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
1,059 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
3,433 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
1,215 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
1,263 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
966 by smlewis
Mon, 2014-04-21 06:47
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
1,430 by xun
Mon, 2014-04-21 06:47
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
1,177 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
1,191 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
914 by sacch
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
1,629 by wangyr
Mon, 2014-04-21 06:47
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
1,754 by sacch
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
1,940 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
5,242 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
6,253 by grisha
Mon, 2014-04-21 06:47
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
5,394 by skovacs
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
1,768 by lzx32
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
2,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
2,367 by petrikigor
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
2,043 by parmef
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
3,551 by akpole
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
1,650 by gw
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
1,507 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
1,351 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
1,356 by alexn
Mon, 2014-04-21 06:47
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
1,637 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
13,582 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
1,487 by loreseeker
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
2,302 by fred
Mon, 2014-04-21 06:47
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,121 by fred
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
2,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
3,464 by weitzner
Mon, 2014-04-21 06:47
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
1,203 by exchhattu
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
1,241 by sacch
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
3,454 by fred
Mon, 2014-04-21 06:47
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
1,386 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
3,187 by glemmon
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
1,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
3,144 by lzx32
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
1,394 by dgront
Mon, 2014-04-21 06:47
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
1,572 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
1,671 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
2,431 by nannemdp
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
1,181 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
1,317 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
2,077 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
1,542 by nkemjika
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
2,549 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
2,587 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,126 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,090 by zadie1118
Mon, 2014-04-21 06:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
2,937 by dimaio
Mon, 2014-04-21 06:47
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
2,426 by weitzner
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
1,536 by felipet
Mon, 2014-04-21 06:47
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