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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
2,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
833 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
1,133 by ytao
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
4,496 by attesor
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
1,963 by smlewis
Mon, 2014-04-21 06:47
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
2,001 by protos_heis
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
2,081 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
5,140 by joeg
Mon, 2014-04-21 06:47
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
1,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
1,737 by eskici
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
2,889 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
866 by danielles
Mon, 2014-04-21 06:47
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
1,782 by RMJ
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
2,475 by eskici
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
2,687 by skovacs
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
1,547 by yperez
Mon, 2014-04-21 06:47
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
2,338 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
2,930 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
2,564 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
1,176 by mpacella
Mon, 2014-04-21 06:47
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
1,597 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
2,904 by jfhuang
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
1,307 by lchen
Mon, 2014-04-21 06:47
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
2,325 by Anonymous
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
1,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
2,265 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
1,333 by mdyini
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
1,627 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
2,860 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
1,561 by glemmon
Mon, 2014-04-21 06:47
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,238 by smlewis
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
1,284 by fred
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,037 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
1,651 by sacch
Mon, 2014-04-21 06:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
1,242 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
1,555 by yperez
Mon, 2014-04-21 06:47
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
1,371 by yzhou
Mon, 2014-04-21 06:47
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
1,525 by dgront
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
3,332 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
2,423 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
881 by tevang
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
7,321 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
1,786 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
4,393 by smlewis
Mon, 2014-04-21 06:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
3,376 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
1,182 by smlewis
Mon, 2014-04-21 06:47
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
5,621 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
2,002 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
1,659 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
904 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
773 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
5,075 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,031 by smlewis
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
1,311 by cn
Mon, 2014-04-21 06:47
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
1,094 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
1,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
2,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
2,484 by franfdez
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
2,155 by justin
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
3,637 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
1,635 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
1,476 by deltag
Mon, 2014-04-21 06:47
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
1,221 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
1,231 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
1,296 by rmoretti
Mon, 2014-04-21 06:47
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
960 by sacch
Mon, 2014-04-21 06:47
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
1,842 by sacch
Mon, 2014-04-21 06:47
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
1,481 by xun
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
2,007 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
5,434 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
6,539 by grisha
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
1,857 by lzx32
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
1,704 by wangyr
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
2,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
3,545 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
1,273 by mark.wilson
Mon, 2014-04-21 06:47
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
5,944 by skovacs
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
1,544 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
1,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
1,408 by alexn
Mon, 2014-04-21 06:47
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
1,688 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
14,038 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
1,557 by loreseeker
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
2,506 by fred
Mon, 2014-04-21 06:47
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,165 by fred
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
2,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
2,633 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
3,583 by weitzner
Mon, 2014-04-21 06:47
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
1,247 by exchhattu
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
1,312 by sacch
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
3,803 by fred
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
2,485 by petrikigor
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
1,232 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
2,115 by parmef
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
3,741 by akpole
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
1,725 by gw
Mon, 2014-04-21 06:47
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