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Rosetta 3 - Applications

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Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
1,709 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
1,714 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,719 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,726 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,732 by eyong123
Wed, 2015-04-22 11:33
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,735 by felipet
Thu, 2014-07-17 10:13
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,747 by smlewis
Mon, 2014-04-21 06:47
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,747 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
1,754 by sn
Thu, 2017-04-20 21:43
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,762 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,765 by mdidonato
Wed, 2014-06-04 14:55
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
1,766 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,767 by ytao
Mon, 2014-04-21 06:48
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
1,768 by David Weis
Mon, 2017-03-13 06:40
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,773 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,774 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,776 by kalabharath
Wed, 2015-04-29 16:21
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,789 by rmoretti
Tue, 2014-11-04 10:33
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
1,789 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
1,789 by sn
Mon, 2017-03-06 10:03
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
1,791 by rmoretti
Thu, 2018-06-28 12:44
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,792 by smlewis
Mon, 2017-01-23 06:26
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,798 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
1,799 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,800 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,801 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,811 by smlewis
Mon, 2014-04-21 06:48
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
1,811 by bogac
Tue, 2017-03-07 02:11
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,812 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,813 by kamau
Wed, 2014-09-24 11:35
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
1,814 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,820 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
1,823 by brspurri
Mon, 2017-05-15 11:48
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
1,829 by cam11
Wed, 2014-08-13 10:06
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,829 by smlewis
Mon, 2014-04-21 06:48
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
1,833 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
1,834 by bjharris
Sun, 2020-08-23 14:03
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
1,839 by rmoretti
Mon, 2015-05-25 11:30
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,842 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,858 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
1,858 by smlewis
Wed, 2017-02-15 07:43
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,874 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
1,879 by rmoretti
Fri, 2018-11-23 11:23
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
1,881 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
1,883 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
1,887 by cdbahl
Sat, 2017-02-18 13:02
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
1,900 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
1,904 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
1,906 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,906 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,909 by smlewis
Mon, 2014-04-21 06:47
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
1,913 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
1,915 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
1,922 by brspurri
Thu, 2017-06-01 10:58
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,924 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
1,925 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
1,926 by rmoretti
Mon, 2015-01-26 12:15
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
1,926 by sacch
Mon, 2014-04-21 06:47
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
1,927 by sushreet
Tue, 2014-08-26 13:02
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,931 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
1,935 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,941 by smlewis
Mon, 2014-04-21 06:48
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,950 by smlewis
Mon, 2014-04-21 06:47
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
1,950 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
1,951 by lanselibai
Tue, 2014-11-11 04:42
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
1,958 by rmoretti
Tue, 2014-11-04 08:53
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
1,960 by rmoretti
Fri, 2015-09-04 10:25
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
1,962 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,964 by attesor
Tue, 2015-11-17 07:36
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
1,981 by lanselibai
Fri, 2014-10-17 03:36
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
1,983 by ronj
Mon, 2014-04-21 06:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
1,987 by Pernille
Wed, 2014-10-08 10:41
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
1,989 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
1,989 by banshee
Mon, 2016-09-12 23:41
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,996 by nawsad
Mon, 2014-04-21 06:48
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
2,009 by tong
Sun, 2018-06-24 23:30
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,009 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
2,009 by Yero
Thu, 2019-07-18 01:39
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
2,012 by everyday847
Wed, 2017-05-17 20:03
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,012 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,014 by rmoretti
Tue, 2017-10-10 09:58
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,014 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,015 by rmoretti
Mon, 2014-04-21 06:47
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,018 by mintseris
Wed, 2015-06-24 22:04
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,019 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,019 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,028 by cossio
Tue, 2015-09-15 12:48
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,037 by smlewis
Wed, 2017-12-13 09:54
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
2,043 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,046 by franfdez
Mon, 2014-07-28 01:04
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,049 by brspurri
Sat, 2017-08-26 07:08
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,050 by rmoretti
Tue, 2016-01-05 08:35
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,064 by rmoretti
Mon, 2014-04-21 06:48
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
2,072 by dantimatter
Wed, 2019-11-06 09:51
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
2,073 by jrporter
Wed, 2017-07-05 06:30
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,074 by rmoretti
Mon, 2014-04-21 06:47
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