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Rosetta 3 - Applications
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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3,204 |
by rmoretti Fri, 2015-01-02 11:45 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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3,203 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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3,201 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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3,195 |
by lanselibai Wed, 2015-01-21 02:40 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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3,195 |
by rmoretti Fri, 2015-09-04 10:25 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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3,181 |
by mintseris Wed, 2015-06-24 22:04 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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3,178 |
by rlwoltz Mon, 2014-04-21 06:47 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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3,178 |
by rmoretti Mon, 2015-05-25 11:49 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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3,178 |
by syoifczeri Tue, 2015-03-10 23:08 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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3,169 |
by smlewis Mon, 2014-04-21 06:47 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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3,162 |
by bogac Tue, 2017-03-07 02:11 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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3,159 |
by smlewis Wed, 2021-12-08 13:02 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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3,148 |
by rmoretti Tue, 2016-01-05 08:35 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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3,145 |
by smlewis Fri, 2017-01-27 07:20 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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3,137 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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3,136 |
by everyday847 Wed, 2020-05-20 08:52 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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3,130 |
by smlewis Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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3,127 |
by lchen Mon, 2014-04-21 06:47 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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3,123 |
by Jane_002 Thu, 2023-08-03 19:47 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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3,116 |
by dgront Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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3,102 |
by smlewis Mon, 2017-01-23 06:26 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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3,100 |
by danpf Fri, 2019-09-06 11:29 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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3,097 |
by franfdez Mon, 2014-07-28 01:04 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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3,094 |
by rmoretti Tue, 2017-03-28 08:51 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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3,093 |
by staciekim Thu, 2017-08-17 17:06 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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3,086 |
by smlewis Mon, 2014-04-21 06:47 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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3,077 |
by rmoretti Mon, 2014-04-21 06:48 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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3,076 |
by Pernille Wed, 2014-10-08 10:41 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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3,075 |
by jadolfbr Sun, 2020-03-01 14:54 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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3,074 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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3,074 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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3,073 |
by brspurri Mon, 2017-05-15 11:48 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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3,067 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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3,067 |
by hzhekova Tue, 2018-01-16 10:31 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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3,067 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
3,065 |
by rmoretti Mon, 2018-11-12 14:35 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,064 |
by mpacella Mon, 2014-04-21 06:47 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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3,061 |
by lanselibai Fri, 2014-10-17 03:36 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,050 |
by ctqwong Thu, 2021-03-18 02:04 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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3,043 |
by rmoretti Tue, 2017-08-22 09:03 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
3,039 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
3,035 |
by jharamesh Mon, 2014-11-03 12:50 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
3,031 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
3,020 |
by rmoretti Mon, 2014-08-04 14:51 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
3,020 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
3,017 |
by brspurri Wed, 2020-06-03 13:20 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,014 |
by ytao Mon, 2014-04-21 06:47 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
3,013 |
by rmoretti Tue, 2018-02-06 09:47 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
3,004 |
by rmoretti Thu, 2014-03-13 08:04 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,997 |
by David Weis Mon, 2017-03-13 06:40 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,982 |
by smlewis Mon, 2018-09-10 11:48 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,968 |
by lanselibai Tue, 2014-11-11 04:42 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,964 |
by rmoretti Wed, 2015-03-25 11:33 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,964 |
by sacch Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,958 |
by smlewis Mon, 2018-10-15 08:42 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,954 |
by ronj Mon, 2014-04-21 06:47 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,953 |
by sushreet Tue, 2014-08-26 13:02 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
2,950 |
by rmoretti Mon, 2015-01-26 12:15 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,948 |
by jharamesh Sat, 2015-08-08 19:51 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,943 |
by smlewis Mon, 2014-04-21 06:47 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,930 |
by rmoretti Tue, 2017-04-25 06:41 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,930 |
by Corvin Thu, 2022-04-21 00:50 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,926 |
by smlewis Wed, 2018-12-12 16:51 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,913 |
by smlewis Mon, 2014-04-21 06:48 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,913 |
by ssrb Fri, 2020-08-14 09:18 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,906 |
by danpf Fri, 2020-02-21 18:32 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,902 |
by rmoretti Tue, 2014-11-04 10:33 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,898 |
by rmoretti Mon, 2014-04-21 06:47 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,893 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,888 |
by rmoretti Mon, 2014-04-21 06:48 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,886 |
by cam11 Wed, 2014-08-13 10:06 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,882 |
by rmoretti Fri, 2015-01-02 09:43 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,881 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,872 |
by rmoretti Mon, 2014-04-21 06:47 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,872 |
by rmoretti Tue, 2014-11-04 08:53 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,869 |
by rmoretti Mon, 2014-04-21 06:48 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,867 |
by jarod Mon, 2014-04-21 06:47 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,866 |
by tylerborrman Wed, 2015-09-23 10:51 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
2,847 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,842 |
by rmoretti Mon, 2016-09-05 11:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,840 |
by cdbahl Sat, 2017-02-18 13:02 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
8 |
2,839 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,827 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,826 |
by rmoretti Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,808 |
by He Xiao Sun, 2021-04-11 19:29 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
2,801 |
by nc-ring Tue, 2021-05-04 12:26 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,796 |
by shrutikhare Fri, 2014-04-18 23:11 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,794 |
by kalabharath Wed, 2015-04-29 16:21 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,792 |
by jingwei xu Wed, 2016-05-04 23:26 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,792 |
by rmoretti Fri, 2016-04-29 08:26 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,787 |
by brspurri Tue, 2020-08-18 09:57 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,787 |
by marinok Mon, 2020-05-11 12:48 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,781 |
by smlewis Mon, 2014-04-21 06:47 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,780 |
by felipet Thu, 2014-07-17 10:13 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,774 |
by alonwenger Sat, 2021-12-18 12:32 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,771 |
by eyong123 Wed, 2015-04-22 11:33 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,770 |
by attesor Mon, 2015-10-26 09:01 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,768 |
by rmoretti Mon, 2015-05-25 11:30 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,764 |
by rmoretti Mon, 2014-04-21 06:48 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,764 |
by cossio Mon, 2015-01-19 07:14 |
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