You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,355 |
by yperez Mon, 2014-04-21 06:47 |
|
Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
2 |
1,831 |
by jlawrie Wed, 2020-08-12 07:27 |
|
r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
1,451 |
by ii_cnr Mon, 2021-04-12 23:44 |
|
Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
3,156 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
3,392 |
by krlitros87 Wed, 2014-10-22 09:31 |
|
score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,827 |
by tylerborrman Wed, 2015-09-23 10:51 |
|
Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,695 |
by bp Thu, 2016-12-22 07:54 |
|
Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
2,117 |
by BuddySphinx Sun, 2018-12-30 16:49 |
|
rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
2 |
500 |
by ramon-arg Fri, 2023-07-14 07:47 |
|
Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,742 |
by eyong123 Wed, 2015-04-22 11:33 |
|
How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
2,456 |
by aep Fri, 2016-07-01 06:54 |
|
RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
2,410 |
by dnamkr Thu, 2019-12-26 10:22 |
|
How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
2,208 |
by lanselibai Tue, 2020-05-12 20:25 |
|
hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
2 |
1,812 |
by tylerborrman Tue, 2021-02-09 16:33 |
|
How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
3,276 |
by sn Thu, 2017-04-20 21:43 |
|
protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
2,156 |
by Negarsardar Thu, 2019-05-30 23:46 |
|
Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
1,789 |
by jlawrie Thu, 2020-08-20 11:00 |
|
Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
2 |
1,715 |
by code_Monkey Tue, 2021-04-27 12:11 |
|
Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
2 |
5,027 |
by zcrook Tue, 2014-11-25 10:27 |
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
3,181 |
by cossio Tue, 2015-09-15 12:48 |
|
clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
5,043 |
by lanselibai Wed, 2014-09-24 13:21 |
|
Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,707 |
by chelsell Wed, 2015-05-27 14:36 |
|
Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,239 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,808 |
by rmoretti Mon, 2016-09-05 11:10 |
|
Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
2,008 |
by Danielsebas Sun, 2019-09-01 02:38 |
|
Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
5,533 |
by jingwei xu Wed, 2016-05-04 23:28 |
|
Is native.pdb necess for fragment_picker? by ylwang » Thu, 2020-03-12 00:57 |
2 |
1,900 |
by ylwang Thu, 2020-03-12 20:42 |
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
1,338 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,024 |
by aloshbau Mon, 2014-04-21 06:47 |
|
Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,741 |
by attesor Mon, 2015-10-26 09:01 |
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,507 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
2 |
297 |
by lei Wed, 2023-11-22 06:23 |
|
Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
2 |
4,324 |
by lanselibai Tue, 2014-09-30 02:28 |
|
rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,786 |
by mtyras Mon, 2015-06-08 03:18 |
|
minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,580 |
by alexn Mon, 2014-04-21 06:47 |
|
membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,989 |
by ytao Mon, 2014-04-21 06:47 |
|
Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,828 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,068 |
by franfdez Mon, 2014-07-28 01:04 |
|
PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,493 |
by attesor Mon, 2014-06-16 07:34 |
|
Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
2,309 |
by Corvin Wed, 2019-06-12 00:04 |
|
Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,465 |
by yliang20 Tue, 2022-06-07 08:36 |
|
Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,517 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,748 |
by kszczepaniak Mon, 2014-04-21 06:48 |
|
Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
3,501 |
by lanselibai Mon, 2014-10-13 10:10 |
|
antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,941 |
by mxp Mon, 2019-09-23 01:40 |
|
Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
2,163 |
by benhardy Sun, 2020-09-20 11:15 |
|
Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,671 |
by e3lm Tue, 2021-09-14 10:02 |
|
A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,487 |
by Corvin Tue, 2019-08-27 00:46 |
|
how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
3,281 |
by felipet Wed, 2014-07-02 07:26 |
|
regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,761 |
by shrutikhare Fri, 2014-04-18 23:11 |
|
the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,582 |
by libai2098 Mon, 2014-04-21 06:47 |
|
GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
2,060 |
by allan.ferrari Tue, 2019-11-05 16:52 |
|
limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,936 |
by sacch Mon, 2014-04-21 06:47 |
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
3,072 |
by Jane_002 Thu, 2023-08-03 19:47 |
|
RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,300 |
by ozsolomon Thu, 2021-10-07 14:25 |
|
creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,656 |
by aaj Wed, 2016-02-24 07:37 |
|
Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,848 |
by chenna Tue, 2021-10-12 20:51 |
|
Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
2 |
117 |
by mandar Tue, 2024-03-12 23:07 |
|
Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,649 |
by Martin Floor Mon, 2017-05-15 11:13 |
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
3,264 |
by asbelx Mon, 2018-06-18 22:34 |
|
Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,835 |
by amorin Fri, 2021-02-12 08:53 |
|
flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,531 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
5,157 |
by lanselibai Thu, 2014-11-20 02:15 |
|
Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,410 |
by code_Monkey Thu, 2021-03-04 12:14 |
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,239 |
by banshee Mon, 2016-09-12 23:41 |
|
Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,662 |
by loreseeker Mon, 2014-04-21 06:47 |
|
select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,334 |
by ast Mon, 2014-04-21 06:48 |
|
Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,751 |
by felipet Thu, 2014-07-17 10:13 |
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,612 |
by jennifer Fri, 2015-03-27 05:56 |
|
KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
3,128 |
by bogac Tue, 2017-03-07 02:11 |
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
3,209 |
by chelsell Wed, 2014-10-08 12:25 |
|
The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,978 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
|
getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,683 |
by alonwenger Sat, 2021-12-18 12:32 |
|
FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,851 |
by cam11 Wed, 2014-08-13 10:06 |
|
score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,436 |
by fred Tue, 2014-04-01 08:24 |
|
Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,850 |
by jlawrie Wed, 2020-08-12 08:56 |
|
GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,520 |
by chenna Mon, 2021-04-12 22:08 |
|
How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
3,022 |
by lanselibai Fri, 2014-10-17 03:36 |
|
How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,509 |
by msardejani Mon, 2016-12-12 17:48 |
|
CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
665 |
by almeida85 Tue, 2023-05-23 08:23 |
|
Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,558 |
by Ashafix Mon, 2014-04-21 06:48 |
|
cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,452 |
by sacch Mon, 2014-04-21 06:47 |
|
Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,778 |
by felipet Mon, 2014-04-21 06:47 |
|
RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,034 |
by mpacella Mon, 2014-04-21 06:47 |
|
Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,826 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
|
Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,430 |
by chenna Wed, 2021-04-28 07:18 |
|
ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,829 |
by harshkhare Mon, 2014-04-21 06:47 |
|
Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,924 |
by lanselibai Tue, 2014-11-11 04:42 |
|
Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,723 |
by rmoretti Thu, 2015-09-17 12:47 |
|
ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
515 |
by kameisel Wed, 2023-09-13 02:16 |
|
membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,266 |
by ytao Mon, 2014-04-21 06:47 |
|
Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,516 |
by aep Sat, 2016-08-13 13:03 |
|
Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
3,051 |
by staciekim Thu, 2017-08-17 17:06 |
|
RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,673 |
by esozdemir Thu, 2019-06-13 12:19 |
|
How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,544 |
by Nicole Deng Thu, 2020-11-05 03:04 |
|
relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,737 |
by m_grisewood Mon, 2014-04-21 06:47 |
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,333 |
by ahonegger Fri, 2014-06-06 09:31 |
|
cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,290 |
by cossio Fri, 2018-05-18 09:51 |
|
Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,959 |
by orionshih Wed, 2019-06-26 03:54 |
|
make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,969 |
by almeida85 Tue, 2020-09-01 01:29 |
Log in to post new content in the forum.