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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
837 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
91 by enmirts
Wed, 2018-03-28 10:34
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
3,337 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
59 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
1,373 by rmoretti
Fri, 2015-01-02 11:45
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
187 by subha
Fri, 2018-04-20 12:49
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
1,555 by ast
Mon, 2014-04-21 06:48
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
366 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
3
2,279 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
2
43 by rbjacob
Fri, 2018-07-20 12:40
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
2,866 by cossio
Mon, 2016-11-21 07:56
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
793 by rmoretti
Mon, 2015-05-25 12:37
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
396 by smlewis
Wed, 2017-12-13 09:54
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
830 by brspurri
Fri, 2017-03-24 11:35
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
8,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
1,420 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
1,432 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
365 by smlewis
Thu, 2017-02-09 21:50
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
955 by smlewis
Fri, 2017-01-20 08:14
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
11,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
2,573 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
866 by jrcf
Mon, 2016-02-15 17:59
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
118 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
2,996 by smlewis
Mon, 2014-04-21 06:47
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
2,561 by brianmlee
Mon, 2014-11-24 19:40
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
1,732 by ast
Mon, 2014-04-21 06:48
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
1,820 by rmoretti
Mon, 2014-04-21 06:47
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,292 by rmoretti
Mon, 2014-04-21 06:48
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
2,414 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
981 by smlewis
Mon, 2014-04-21 06:47
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
1,191 by dkozuch
Sat, 2017-09-09 08:51
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
243 by rmoretti
Tue, 2017-10-10 10:08
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
2,511 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
1,354 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
582 by felipet
Wed, 2014-07-02 10:23
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
1,955 by msardejani
Sat, 2016-10-01 12:55
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
3,965 by attesor
Wed, 2015-10-21 13:53
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,714 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
1,119 by ronj
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
1,654 by aroop
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
2,729 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
1,498 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
3,304 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
5,588 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
793 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
3,175 by lanselibai
Thu, 2014-11-20 02:15
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
10,620 by lanselibai
Tue, 2014-12-02 09:46
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
2,201 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
3,993 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
1,521 by lanselibai
Fri, 2014-09-26 14:58
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
481 by rmoretti
Fri, 2017-12-01 12:05
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
2,792 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
5,881 by benniu2004
Mon, 2014-04-21 06:47
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
2,762 by tfliu
Mon, 2014-04-21 06:48
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
2,236 by libai2098
Mon, 2014-04-21 06:47
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
386 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
98 by asbelx
Mon, 2018-06-18 22:34
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
98 by rmoretti
Thu, 2018-06-28 12:58
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
372 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
582 by rmoretti
Thu, 2017-04-20 13:57
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
3,250 by benniu2004
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
2,662 by smlewis
Mon, 2014-04-21 06:47
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
1,374 by jennifer
Fri, 2015-03-27 05:56
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
1,363 by chelsell
Wed, 2015-05-27 14:36
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,227 by ytao
Mon, 2014-04-21 06:48
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
847 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
1,819 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,071 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
211 by smlewis
Mon, 2017-11-13 10:43
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
2,480 by rmoretti
Tue, 2017-06-20 09:02
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
7,190 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
1,511 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
1,136 by cossio
Tue, 2015-09-15 12:48
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
351 by ac.research
Mon, 2017-01-09 00:59
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
343 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
3,213 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
2,493 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
1,618 by rmoretti
Tue, 2014-06-17 08:51
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
2,640 by rmoretti
Tue, 2015-08-18 16:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,080 by attesor
Tue, 2015-11-17 07:36
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
485 by aaj
Fri, 2016-02-26 08:40
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
1,715 by rmoretti
Tue, 2015-03-31 08:20
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
403 by rmoretti
Thu, 2017-04-27 07:10
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
18,551 by rmoretti
Fri, 2014-10-17 10:17
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
1,416 by rmoretti
Tue, 2015-11-10 11:35
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
2,745 by dktest
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
3,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
1,412 by lchen
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
3,210 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
2,609 by rmoretti
Mon, 2014-04-21 06:48
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
732 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
2
1,084 by lanselibai
Wed, 2014-11-19 08:01
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
2,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
1,413 by rmoretti
Fri, 2016-06-17 10:36
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
4,386 by fred
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
2,846 by fred
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
1,638 by rmoretti
Mon, 2014-04-21 06:47
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
434 by smlewis
Sat, 2017-12-23 15:56
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