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Rosetta 3 - Applications
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,381 |
by a_s_a Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
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3,991 |
by Anpu Tue, 2018-09-25 18:53 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,902 |
by rmoretti Tue, 2014-11-04 10:33 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,724 |
by lkrathn Mon, 2014-04-21 06:48 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,496 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,475 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,939 |
by glemmon Mon, 2014-04-21 06:47 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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1,041 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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4,539 |
by sacch Mon, 2014-04-21 06:47 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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4,864 |
by frichter Mon, 2014-04-21 06:47 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,262 |
by matteoferla Mon, 2020-05-04 02:02 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,641 |
by rmoretti Tue, 2017-10-17 09:03 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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2,199 |
by rmoretti Thu, 2016-06-23 10:55 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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874 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,818 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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956 |
by sc19 Thu, 2022-07-14 01:34 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,962 |
by rmoretti Mon, 2018-11-12 14:31 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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3,073 |
by brspurri Mon, 2017-05-15 11:48 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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7,411 |
by rmoretti Wed, 2017-01-11 12:53 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,666 |
by rmoretti Mon, 2014-05-12 15:08 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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3,033 |
by jharamesh Mon, 2014-11-03 12:50 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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3,093 |
by staciekim Thu, 2017-08-17 17:06 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,749 |
by Hirbond Wed, 2022-10-26 12:57 |
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ligand_docking by yang » Thu, 2023-02-16 04:37 |
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2,504 |
by yang Wed, 2023-02-22 19:18 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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1,666 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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2,380 |
by DGR95 Wed, 2021-04-28 16:13 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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973 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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915 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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5,129 |
by rmoretti Mon, 2014-04-21 06:47 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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2,300 |
by YuFei Sat, 2020-05-30 00:12 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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934 |
by SWM Fri, 2020-01-24 07:35 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,963 |
by sacch Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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6,076 |
by Loki01 Thu, 2018-02-15 13:54 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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815 |
by sam_dc Sat, 2021-10-09 05:38 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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919 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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4,753 |
by dfcoelho Tue, 2018-10-16 09:05 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,606 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,978 |
by rmoretti Tue, 2016-07-12 09:41 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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4,863 |
by smlewis Wed, 2018-08-08 15:48 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
6,093 |
by lzx32 Mon, 2014-04-21 06:47 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,768 |
by rmoretti Mon, 2015-05-25 11:30 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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2,004 |
by agctomer Thu, 2021-04-08 07:37 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,749 |
by rmoretti Mon, 2017-03-06 12:39 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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2,290 |
by rmoretti Sat, 2015-06-20 20:07 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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5,346 |
by wsgosal Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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4,369 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
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9,022 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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3,169 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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4,264 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,333 |
by rmoretti Mon, 2015-05-25 12:30 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,622 |
by matteoferla Thu, 2020-07-02 07:27 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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14,004 |
by lanselibai Fri, 2014-11-07 02:06 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
0 |
2,316 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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939 |
by almeida85 Thu, 2022-08-18 07:53 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
6,297 |
by Corvin Tue, 2019-10-15 01:12 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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5,245 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,710 |
by smlewis Mon, 2014-04-21 06:48 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
2,024 |
by almeida85 Tue, 2020-09-01 01:29 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
5,008 |
by smlewis Mon, 2014-04-21 06:47 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
1 |
1,304 |
by brspurri Wed, 2021-01-20 08:11 |
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Match Application Error: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed by Payne » Sun, 2024-03-24 07:26 |
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92 |
by Payne Sun, 2024-03-31 01:29 |
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Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
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262 |
by uka147 Thu, 2023-11-09 01:36 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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6,379 |
by siciliu Thu, 2014-04-10 09:50 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,679 |
by JadAbbass Mon, 2014-04-21 06:48 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,299 |
by ytao Mon, 2014-04-21 06:47 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
2,287 |
by fglaser Mon, 2014-04-21 06:47 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,562 |
by rmoretti Mon, 2019-06-24 14:39 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,772 |
by benhardy Wed, 2020-09-30 04:24 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
1,206 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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3,249 |
by chelsell Wed, 2014-10-08 12:25 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,547 |
by smlewis Mon, 2014-04-21 06:48 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
2,260 |
by jlapin Wed, 2018-08-01 07:15 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,013 |
by ytao Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
15,295 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
0 |
323 |
by Corvin Thu, 2023-07-13 05:30 |
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Memory Leak: Relax Density MPI RAM overusage kills process by mmfarrugia » Sun, 2023-12-31 12:02 |
5 |
542 |
by mmfarrugia Fri, 2024-01-12 10:35 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
0 |
894 |
by tschiex Wed, 2020-07-08 05:28 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
0 |
738 |
by inorgchem Tue, 2020-06-16 20:45 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
0 |
985 |
by e3lm Tue, 2022-05-17 11:58 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
1,973 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,613 |
by alexn Mon, 2014-04-21 06:47 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
0 |
2,278 |
by lanselibai Thu, 2015-01-29 00:50 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
5,184 |
by fred Mon, 2014-04-21 06:48 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
10,340 |
by lanselibai Wed, 2014-10-01 02:13 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,896 |
by rmoretti Fri, 2019-04-26 12:13 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,744 |
by e3lm Tue, 2021-09-14 10:02 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
1 |
524 |
by rmoretti Fri, 2023-05-05 13:44 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
5,181 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,957 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Model GFP chromophore(cro) using NCAA or NC backbone method? by lei » Thu, 2024-04-04 06:23 |
0 |
69 |
by lei Thu, 2024-04-04 06:23 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
2,154 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,926 |
by smlewis Wed, 2018-12-12 16:51 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,997 |
by rmoretti Mon, 2017-05-15 08:54 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
2,497 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,867 |
by rmoretti Mon, 2016-09-05 10:59 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,317 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,478 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,066 |
by hzhekova Tue, 2018-01-16 10:31 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
4,105 |
by nkemjika Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,665 |
by smlewis Mon, 2014-04-21 06:47 |
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