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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
2,768 by eskici
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
3,619 by yogeshkd
Mon, 2014-04-21 06:47
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
40,008 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
0
305 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
2,510 by smlewis
Thu, 2018-06-14 10:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
1,825 by tong
Sun, 2018-06-24 23:30
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
842 by rmoretti
Wed, 2019-07-10 09:22
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
202 by marinok
Mon, 2020-09-28 14:11
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
4,342 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
1,170 by smlewis
Mon, 2018-10-15 08:42
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
5,842 by helenah
Thu, 2020-10-08 05:29
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
376 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,469 by rmoretti
Tue, 2017-04-25 06:41
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,093 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
7,781 by rmoretti
Fri, 2016-06-17 10:22
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,134 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,137 by jrcf
Fri, 2016-02-12 16:42
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
5
3,664 by Nolanm15
Tue, 2020-06-30 08:43
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,399 by jrcf
Mon, 2015-09-21 11:10
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
404 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
526 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
2,565 by fred
Mon, 2014-04-21 06:47
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
366 by amorin
Fri, 2021-02-12 08:53
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,901 by smlewis
Mon, 2014-04-21 06:47
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
484 by bjharris
Thu, 2020-07-02 11:09
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
915 by danpf
Fri, 2020-02-21 18:32
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
1,937 by rmoretti
Thu, 2014-03-13 08:04
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
5,913 by ast
Thu, 2014-03-13 07:17
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
806 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,499 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
3,900 by rmoretti
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
4,904 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,057 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,473 by smlewis
Fri, 2017-01-27 07:20
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,004 by Anonymous
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
5,531 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
6,440 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
2,818 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
940 by rmoretti
Thu, 2017-05-18 13:51
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
441 by rmoretti
Mon, 2019-08-26 12:17
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
4,641 by brspurri
Mon, 2014-04-21 06:47
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
643 by smlewis
Fri, 2018-07-27 13:32
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
2,656 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
815 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
2,563 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
176 by Soler
Wed, 2020-09-16 19:08
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
317 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
537 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
253 by Soler
Fri, 2020-09-18 08:09
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
2,841 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,095 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
2,714 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
1,679 by sn
Mon, 2017-03-06 10:03
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
2,208 by attesor
Mon, 2014-06-16 07:34
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
959 by rmoretti
Fri, 2017-09-15 13:11
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
738 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,393 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
2,872 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
3,682 by felipet
Wed, 2015-02-11 05:13
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
587 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
155 by rmoretti
Fri, 2020-11-27 10:47
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,011 by kxiao
Thu, 2014-06-05 08:37
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
1,992 by franfdez
Mon, 2014-07-28 01:04
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
624 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,268 by sacch
Mon, 2014-04-21 06:47
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
344 by Corvin
Wed, 2020-11-25 02:58
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,770 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
5,248 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
5,172 by linucks
Mon, 2016-06-20 12:02
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,424 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,311 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
721 by rmoretti
Wed, 2018-11-21 15:31
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
3,931 by jljbbc
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,312 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,650 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,314 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
3,589 by xfliu
Mon, 2014-04-21 06:47
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,368 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
525 by rmoretti
Fri, 2020-07-10 09:59
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
539 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
2,821 by mumdonar
Mon, 2014-04-21 06:48
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
2,721 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
5,492 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,040 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
2,865 by RMJ
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
10,191 by Basantab
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,353 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,672 by mdidonato
Wed, 2014-06-04 14:55
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
1,190 by dyu
Thu, 2017-09-28 18:54
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
5,905 by glemmon
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
4,393 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
316 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,002 by rmoretti
Mon, 2014-04-21 06:48
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
2,585 by xun
Mon, 2014-04-21 06:47
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
1,815 by cdbahl
Sat, 2017-02-18 13:02
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
4,022 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
597 by rmoretti
Wed, 2019-07-10 09:24
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
825 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
640 by rmoretti
Thu, 2019-05-09 15:40
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
1,274 by ajasja
Wed, 2019-05-15 15:40
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