You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
2,296 |
by rmoretti Fri, 2016-10-14 08:56 |
|
Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
2,385 |
by rmoretti Fri, 2016-10-14 08:42 |
|
symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
6 |
6,297 |
by msardejani Sat, 2016-10-01 12:55 |
|
RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
4,238 |
by rmoretti Wed, 2016-09-14 02:05 |
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,276 |
by banshee Mon, 2016-09-12 23:41 |
|
AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
5 |
5,444 |
by ks Mon, 2016-09-12 03:14 |
|
why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
1 |
2,183 |
by rmoretti Fri, 2016-09-09 07:47 |
|
Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
1 |
2,546 |
by rmoretti Mon, 2016-09-05 11:29 |
|
Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,845 |
by rmoretti Mon, 2016-09-05 11:10 |
|
modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,879 |
by rmoretti Mon, 2016-09-05 10:59 |
|
fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
11,047 |
by smlewis Wed, 2016-08-17 07:56 |
|
Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,558 |
by aep Sat, 2016-08-13 13:03 |
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
1 |
2,426 |
by gsuchunli Mon, 2016-07-25 13:56 |
|
RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
2,225 |
by mwfranklin Mon, 2016-07-25 11:49 |
|
Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,982 |
by rmoretti Tue, 2016-07-12 09:41 |
|
Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,330 |
by rmoretti Tue, 2016-07-12 09:35 |
|
revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
4,243 |
by rmoretti Tue, 2016-07-12 09:30 |
|
scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,736 |
by rmoretti Tue, 2016-07-12 09:05 |
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,113 |
by rmoretti Tue, 2016-07-12 08:56 |
|
How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
2,492 |
by aep Fri, 2016-07-01 06:54 |
|
fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
11 |
13,714 |
by starone Fri, 2016-06-24 18:29 |
|
Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
2,203 |
by rmoretti Thu, 2016-06-23 10:55 |
|
problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
7,658 |
by linucks Mon, 2016-06-20 12:02 |
|
xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
4,398 |
by rmoretti Fri, 2016-06-17 10:36 |
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
2,078 |
by rmoretti Fri, 2016-06-17 10:24 |
|
No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
12,275 |
by rmoretti Fri, 2016-06-17 10:22 |
|
Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
2,278 |
by rmoretti Fri, 2016-06-17 10:15 |
|
Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,771 |
by Sandy Tue, 2016-05-31 18:48 |
|
Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
5,582 |
by jingwei xu Wed, 2016-05-04 23:28 |
|
cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,794 |
by jingwei xu Wed, 2016-05-04 23:26 |
|
ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,926 |
by smlewis Mon, 2016-05-02 08:20 |
|
Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
3,233 |
by rmoretti Fri, 2016-04-29 09:21 |
|
Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
12,141 |
by rmoretti Fri, 2016-04-29 08:57 |
|
RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,794 |
by rmoretti Fri, 2016-04-29 08:26 |
|
ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
17,092 |
by rmoretti Thu, 2016-04-28 16:43 |
|
Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,998 |
by Derek Wed, 2016-04-27 01:31 |
|
Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,585 |
by Marius1987 Sun, 2016-04-10 12:09 |
|
Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
2,202 |
by rmoretti Fri, 2016-04-08 07:39 |
|
Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
4,247 |
by kbuhr Mon, 2016-03-28 01:08 |
|
Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,961 |
by Marius1987 Mon, 2016-03-14 04:34 |
|
De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,676 |
by dee2711453 Fri, 2016-03-11 21:32 |
|
Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,944 |
by smlewis Wed, 2016-03-09 04:11 |
|
wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,455 |
by aaj Fri, 2016-02-26 08:40 |
|
Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
2,213 |
by rmoretti Wed, 2016-02-24 14:39 |
|
creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,696 |
by aaj Wed, 2016-02-24 07:37 |
|
Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,723 |
by jrcf Mon, 2016-02-15 17:59 |
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,543 |
by jrcf Fri, 2016-02-12 16:42 |
|
CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
7,227 |
by Marius1987 Fri, 2016-02-05 07:20 |
|
Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,634 |
by Derek Smith Wed, 2016-02-03 05:47 |
|
ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
3,153 |
by rmoretti Tue, 2016-01-05 08:35 |
|
RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,873 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
|
Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
0 |
1,557 |
by achambe Mon, 2016-01-04 11:26 |
|
CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
2,124 |
by rmoretti Tue, 2015-12-15 09:48 |
|
Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
8,595 |
by eyong123 Wed, 2015-12-09 07:17 |
|
RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,121 |
by jtmacd Fri, 2015-12-04 03:11 |
|
Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
2,331 |
by rmoretti Tue, 2015-11-24 16:16 |
|
cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
2,429 |
by rmoretti Tue, 2015-11-24 16:07 |
|
RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
7,451 |
by rmoretti Tue, 2015-11-24 15:30 |
|
Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,829 |
by rosend Tue, 2015-11-17 12:12 |
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,282 |
by attesor Tue, 2015-11-17 07:36 |
|
what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
4,011 |
by rmoretti Tue, 2015-11-10 11:35 |
|
Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,981 |
by rmoretti Tue, 2015-11-10 11:10 |
|
FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
6,579 |
by syoifczeri Sat, 2015-11-07 21:42 |
|
JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
2,389 |
by rmoretti Sat, 2015-10-31 08:57 |
|
Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,775 |
by attesor Mon, 2015-10-26 09:01 |
|
heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
2,006 |
by smlewis Thu, 2015-10-22 08:04 |
|
symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
7,784 |
by attesor Wed, 2015-10-21 13:53 |
|
Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
4,178 |
by rmoretti Mon, 2015-10-12 15:20 |
|
Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
7,070 |
by rmoretti Mon, 2015-10-12 15:10 |
|
Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
4,178 |
by jrcf Mon, 2015-10-05 21:32 |
|
ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
1 |
2,311 |
by rmoretti Fri, 2015-10-02 12:30 |
|
-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
17,590 |
by rmoretti Mon, 2015-09-28 15:00 |
|
fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
5,362 |
by tylerborrman Mon, 2015-09-28 09:30 |
|
score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,868 |
by tylerborrman Wed, 2015-09-23 10:51 |
|
Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
4,117 |
by jrcf Mon, 2015-09-21 11:10 |
|
Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,778 |
by rmoretti Thu, 2015-09-17 12:47 |
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
3,215 |
by cossio Tue, 2015-09-15 12:48 |
|
How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
6 |
13,392 |
by rmoretti Fri, 2015-09-11 13:27 |
|
Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
1 |
2,416 |
by jadolfbr Wed, 2015-09-09 12:35 |
|
Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
5,058 |
by rmoretti Wed, 2015-09-09 12:08 |
|
Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
2,162 |
by rmoretti Wed, 2015-09-09 12:01 |
|
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
3,199 |
by rmoretti Fri, 2015-09-04 10:25 |
|
InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,553 |
by jadolfbr Thu, 2015-09-03 16:18 |
|
Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
6 |
8,560 |
by rmoretti Wed, 2015-09-02 12:43 |
|
Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
4,260 |
by rmoretti Wed, 2015-09-02 12:33 |
|
Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
3,038 |
by allan.ferrari Fri, 2015-08-28 12:07 |
|
autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,287 |
by sgourn Tue, 2015-08-18 18:25 |
|
variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
7,154 |
by rmoretti Tue, 2015-08-18 16:47 |
|
Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
1 |
2,116 |
by bernhardcl Tue, 2015-08-11 09:11 |
|
homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,954 |
by jharamesh Sat, 2015-08-08 19:51 |
|
how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
2,157 |
by rmoretti Thu, 2015-08-06 08:57 |
|
molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,534 |
by rmoretti Tue, 2015-07-14 14:59 |
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,284 |
by rmoretti Sat, 2015-07-11 13:38 |
|
Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
2,279 |
by rmoretti Fri, 2015-07-03 14:41 |
|
Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
7,436 |
by eyong123 Mon, 2015-06-29 04:44 |
|
docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,181 |
by mintseris Wed, 2015-06-24 22:04 |
|
auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
4,320 |
by beowulfey Tue, 2015-06-23 16:10 |
|
Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
2,290 |
by rmoretti Sat, 2015-06-20 20:07 |
|
folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
4,015 |
by rmoretti Fri, 2015-06-19 13:53 |
|
Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
8,671 |
by protos_heis Mon, 2015-06-08 07:00 |
Log in to post new content in the forum.