You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,775 |
by attesor Mon, 2015-10-26 09:01 |
|
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,558 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
|
nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
2 |
349 |
by lei Wed, 2023-11-22 06:23 |
|
|
Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
2 |
4,360 |
by lanselibai Tue, 2014-09-30 02:28 |
|
|
rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,838 |
by mtyras Mon, 2015-06-08 03:18 |
|
|
Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,099 |
by franfdez Mon, 2014-07-28 01:04 |
|
|
How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
3,324 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,519 |
by attesor Mon, 2014-06-16 07:34 |
|
|
Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
2,370 |
by Corvin Wed, 2019-06-12 00:04 |
|
|
Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,507 |
by yliang20 Tue, 2022-06-07 08:36 |
|
|
Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
3,182 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
|
Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,785 |
by kszczepaniak Mon, 2014-04-21 06:48 |
|
|
Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
3,540 |
by lanselibai Mon, 2014-10-13 10:10 |
|
|
antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,987 |
by mxp Mon, 2019-09-23 01:40 |
|
|
Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
2,205 |
by benhardy Sun, 2020-09-20 11:15 |
|
|
A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,539 |
by Corvin Tue, 2019-08-27 00:46 |
|
|
regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,801 |
by shrutikhare Fri, 2014-04-18 23:11 |
|
|
Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,762 |
by e3lm Tue, 2021-09-14 10:02 |
|
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
3,131 |
by Jane_002 Thu, 2023-08-03 19:47 |
|
|
RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,376 |
by ozsolomon Thu, 2021-10-07 14:25 |
|
|
flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
4,133 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
|
|
creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,696 |
by aaj Wed, 2016-02-24 07:37 |
|
|
Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,901 |
by chenna Tue, 2021-10-12 20:51 |
|
|
Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
2 |
205 |
by mandar Tue, 2024-03-12 23:07 |
|
|
GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
2,099 |
by allan.ferrari Tue, 2019-11-05 16:52 |
|
|
Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
5,197 |
by lanselibai Thu, 2014-11-20 02:15 |
|
|
Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,450 |
by code_Monkey Thu, 2021-03-04 12:14 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,377 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,277 |
by banshee Mon, 2016-09-12 23:41 |
|
|
Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,688 |
by Martin Floor Mon, 2017-05-15 11:13 |
|
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
3,320 |
by asbelx Mon, 2018-06-18 22:34 |
|
|
Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,884 |
by amorin Fri, 2021-02-12 08:53 |
|
|
Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,059 |
by aloshbau Mon, 2014-04-21 06:47 |
|
|
RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,073 |
by mpacella Mon, 2014-04-21 06:47 |
|
|
kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
3,382 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
3,166 |
by bogac Tue, 2017-03-07 02:11 |
|
|
ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,859 |
by harshkhare Mon, 2014-04-21 06:47 |
|
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
3,254 |
by chelsell Wed, 2014-10-08 12:25 |
|
|
The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
2,027 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
|
|
getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,802 |
by alonwenger Sat, 2021-12-18 12:32 |
|
|
Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,784 |
by felipet Thu, 2014-07-17 10:13 |
|
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,655 |
by jennifer Fri, 2015-03-27 05:56 |
|
|
FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,888 |
by cam11 Wed, 2014-08-13 10:06 |
|
|
relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,770 |
by m_grisewood Mon, 2014-04-21 06:47 |
|
|
score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,495 |
by fred Tue, 2014-04-01 08:24 |
|
|
Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,894 |
by jlawrie Wed, 2020-08-12 08:56 |
|
|
GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,578 |
by chenna Mon, 2021-04-12 22:08 |
|
|
How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
3,066 |
by lanselibai Fri, 2014-10-17 03:36 |
|
|
How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,543 |
by msardejani Mon, 2016-12-12 17:48 |
|
|
CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
726 |
by almeida85 Tue, 2023-05-23 08:23 |
|
|
Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,905 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
|
|
Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,477 |
by chenna Wed, 2021-04-28 07:18 |
|
|
Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,586 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,972 |
by lanselibai Tue, 2014-11-11 04:42 |
|
|
Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,778 |
by rmoretti Thu, 2015-09-17 12:47 |
|
|
ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
575 |
by kameisel Wed, 2023-09-13 02:16 |
|
|
Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,559 |
by aep Sat, 2016-08-13 13:03 |
|
|
Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
3,101 |
by staciekim Thu, 2017-08-17 17:06 |
|
|
RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,723 |
by esozdemir Thu, 2019-06-13 12:19 |
|
|
How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,581 |
by Nicole Deng Thu, 2020-11-05 03:04 |
|
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,371 |
by ahonegger Fri, 2014-06-06 09:31 |
|
|
cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,352 |
by cossio Fri, 2018-05-18 09:51 |
|
|
Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
2,003 |
by orionshih Wed, 2019-06-26 03:54 |
|
|
make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
2,029 |
by almeida85 Tue, 2020-09-01 01:29 |
|
|
ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,743 |
by ajaniharesh Tue, 2019-04-09 06:53 |
|
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,284 |
by rmoretti Sat, 2015-07-11 13:38 |
|
|
RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
4,238 |
by rmoretti Wed, 2016-09-14 02:05 |
|
|
"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,277 |
by Corvin Thu, 2019-10-10 01:12 |
|
|
select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,367 |
by ast Mon, 2014-04-21 06:48 |
|
|
RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,684 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,794 |
by jingwei xu Wed, 2016-05-04 23:26 |
|
|
Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,306 |
by ashu4487 Mon, 2018-07-16 19:24 |
|
|
De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
2,096 |
by BuddySphinx Tue, 2019-07-02 12:03 |
|
|
Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,495 |
by rmoretti Mon, 2017-03-13 08:01 |
|
|
problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
2,353 |
by dyu Thu, 2017-09-28 18:54 |
|
|
Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,883 |
by Danielsebas Tue, 2019-09-17 01:03 |
|
|
setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
1,390 |
by browns02 Tue, 2021-06-29 11:41 |
|
|
ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
4,271 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,820 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,699 |
by lanselibai Tue, 2015-01-13 14:25 |
|
|
Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
3,274 |
by johnnytam100 Tue, 2019-05-21 20:48 |
|
|
Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,804 |
by weehee Mon, 2014-04-21 06:47 |
|
|
analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
7,145 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
21,116 |
by rmoretti Fri, 2014-10-17 10:17 |
|
|
RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
3,105 |
by smlewis Mon, 2017-01-23 06:26 |
|
|
parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,771 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
3,045 |
by rmoretti Tue, 2017-08-22 09:03 |
|
|
relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,359 |
by smlewis Thu, 2020-05-21 21:05 |
|
|
partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,260 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
5,188 |
by rmoretti Wed, 2014-07-02 16:55 |
|
|
Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
2,030 |
by vizcarra Thu, 2021-08-26 10:16 |
|
|
cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
8,144 |
by fred Thu, 2014-03-27 11:29 |
|
|
Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
3,490 |
by sn Mon, 2017-03-06 10:03 |
|
|
clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
2,595 |
by rmoretti Tue, 2020-07-28 08:24 |
|
|
Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
3,075 |
by rmoretti Mon, 2018-11-12 14:35 |
|
|
RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,928 |
by everyday847 Wed, 2020-12-09 21:46 |
|
|
HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,296 |
by protos_heis Tue, 2014-08-05 12:47 |
|
|
Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,971 |
by dswhit Tue, 2015-04-21 10:14 |
|
|
Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
4,776 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
|
|
Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
3 |
475 |
by ng98 Tue, 2024-01-09 23:42 |
Log in to post new content in the forum.
