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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,321 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,159 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,674 by smlewis
Mon, 2017-01-23 06:26
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
3,784 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,288 by rmoretti
Wed, 2014-07-02 16:55
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
3,477 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,467 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
646 by smlewis
Thu, 2020-05-21 21:05
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
243 by everyday847
Wed, 2020-12-09 21:46
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
2,656 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
2,951 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,122 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
6,462 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
1,678 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
579 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,559 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
3,484 by protos_heis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
835 by xingqing326
Tue, 2020-04-21 19:11
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,314 by attesor
Tue, 2015-01-27 02:20
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
2,987 by rmoretti
Tue, 2016-07-12 09:35
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
3,666 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,024 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,425 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
2,351 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
3,440 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
3,622 by fede
Wed, 2020-09-23 11:24
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
2,901 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
3,931 by jljbbc
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
2,565 by fred
Mon, 2014-04-21 06:47
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
1,257 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
3,676 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
1,521 by subha
Fri, 2018-04-20 12:49
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
783 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
2,554 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
5,663 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
3,488 by rmoretti
Thu, 2015-04-30 16:46
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
1,936 by jrporter
Wed, 2017-07-05 06:30
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
2,654 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,011 by kxiao
Thu, 2014-06-05 08:37
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
2,044 by jhm13c
Thu, 2017-03-02 12:01
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
561 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
2,953 by sacch
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
628 by brspurri
Tue, 2020-08-18 09:57
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
3,619 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
3,974 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
2,841 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
4,626 by rmoretti
Thu, 2015-04-16 11:23
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
4,101 by afmo
Thu, 2014-05-22 01:19
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
1,839 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
1,412 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
124 by nannemdp
Wed, 2021-02-03 08:52
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
4,261 by lanselibai
Sun, 2015-03-01 15:00
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
4,949 by IAndre
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
3,412 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
4,235 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,133 by Denise
Thu, 2017-06-15 04:26
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
610 by haom
Tue, 2020-06-16 05:55
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,106 by cossio
Mon, 2015-01-19 07:10
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
697 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
2,908 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
157 by agctomer
Sun, 2021-01-31 01:06
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
848 by maruhuang
Thu, 2019-09-26 18:52
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
3,568 by fred
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,471 by rmoretti
Fri, 2019-03-29 09:30
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
3,834 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
1,162 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
974 by danpf
Fri, 2019-09-06 11:29
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
2,779 by dgront
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
3,472 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
2,787 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
2,054 by MJG
Tue, 2017-04-04 23:59
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,329 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
2,711 by mdyini
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
3,800 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,426 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
344 by Corvin
Wed, 2020-11-25 02:58
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
3,699 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
915 by danpf
Fri, 2020-02-21 18:32
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
1,994 by subha
Fri, 2017-06-09 15:42
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
772 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
4,318 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
11,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,227 by smlewis
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
5,531 by lanselibai
Fri, 2014-10-17 05:10
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
3,608 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
724 by marinok
Mon, 2020-05-11 12:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
3,634 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
4
2,496 by Morrian_Lynn
Thu, 2020-03-05 10:07
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
1,533 by Loki01
Thu, 2018-04-12 08:28
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
4,048 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
4,141 by siciliu
Thu, 2014-04-10 09:50
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
3,441 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,037 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
7,084 by deltag
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
2,061 by tsztain
Tue, 2018-12-11 13:41
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,109 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,061 by jadolfbr
Mon, 2014-04-21 06:48
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