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Rosetta 3 - Applications

Topic / Topic startersort ascending Replies Views Last post
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,170 by Derek
Wed, 2016-04-27 01:31
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
228 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,175 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
31,307 by rmoretti
Fri, 2018-05-18 12:35
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,388 by Pernille
Fri, 2014-06-20 00:17
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
2,579 by Pernille
Thu, 2014-07-03 07:21
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
404 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,065 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,745 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,394 by everyday847
Sun, 2014-09-28 21:16
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,398 by attesor
Tue, 2015-01-27 02:20
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
2,973 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
243 by almeida85
Mon, 2020-08-31 07:17
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
4,943 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
1,820 by rmoretti
Fri, 2018-11-23 11:23
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
434 by Ruska322
Sat, 2019-09-07 05:21
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,640 by lanselibai
Tue, 2015-02-24 02:36
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
2,584 by maxebert
Mon, 2014-04-21 06:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
6,667 by belousoff
Mon, 2017-06-26 16:46
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,054 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
689 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
5
845 by mieczyslaw
Thu, 2020-10-29 07:52
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
1,103 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
303 by Astghik
Thu, 2020-12-03 02:35
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,614 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,308 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
1,085 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
1,533 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
562 by jadolfbr
Thu, 2019-09-19 08:53
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
20,908 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
2,337 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
601 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,881 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
2,069 by subha
Fri, 2017-06-09 15:42
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
3,699 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
7,349 by akpole
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
5,778 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
3,595 by rmoretti
Thu, 2015-04-30 16:46
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
178 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
470 by scyphs
Mon, 2020-08-10 08:09
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
2,644 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
2,913 by aloshbau
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,198 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
3,166 by rmoretti
Tue, 2017-07-18 09:00
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,798 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,063 by smlewis
Thu, 2017-06-22 13:31
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,467 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
1,944 by everyday847
Wed, 2017-05-17 20:03
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
1,904 by sushreet
Tue, 2014-08-26 13:02
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
397 by pwging13
Thu, 2019-12-19 09:53
Normal topic Error from clean_pdb.py
by code_Monkey » Mon, 2021-03-01 17:00
2
140 by code_Monkey
Thu, 2021-03-04 12:14
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,292 by smlewis
Fri, 2017-06-16 07:35
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
2,515 by max
Thu, 2014-11-27 02:56
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
1,340 by rmoretti
Thu, 2020-01-30 15:42
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
4,827 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,597 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,693 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,005 by rmoretti
Mon, 2019-06-24 13:46
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
3,318 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,322 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
4,146 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,702 by eyong123
Wed, 2015-04-22 11:33
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
4,820 by eyong123
Mon, 2015-06-29 04:44
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
2,441 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
5,714 by protos_heis
Mon, 2015-06-08 07:00
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
1,732 by David Weis
Mon, 2017-03-13 06:40
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
490 by smlewis
Fri, 2019-09-27 11:54
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
959 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
6,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
2,971 by felipet
Fri, 2017-06-16 11:42
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,133 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,644 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,388 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
3,677 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
940 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
0
229 by mxp
Tue, 2020-07-07 01:21
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
459 by jlawrie
Wed, 2020-08-12 07:27
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
457 by jlawrie
Wed, 2020-08-12 08:57
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,416 by rmoretti
Fri, 2015-07-03 14:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
1,995 by mintseris
Wed, 2015-06-24 22:04
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,107 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
5,616 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
1,810 by rmoretti
Fri, 2015-01-02 09:43
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
667 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
1,397 by renedominik
Tue, 2020-02-18 01:36
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
375 by Corvin
Mon, 2019-12-02 02:00
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
3,580 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,610 by rosend
Tue, 2015-11-17 12:12
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,004 by msk
Tue, 2014-06-03 11:09
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,088 by smlewis
Tue, 2017-02-21 07:58
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
2,137 by MJG
Tue, 2017-04-04 23:59
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
896 by rmoretti
Tue, 2018-12-04 08:55
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,117 by rmoretti
Mon, 2014-08-04 14:51
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
395 by sdh_h
Wed, 2020-03-25 12:43
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
1,803 by smlewis
Wed, 2017-02-15 07:43
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
3,983 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
3,391 by AmelieH
Wed, 2014-11-19 11:26
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
7,442 by rmoretti
Mon, 2014-04-21 06:48
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