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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,604 by ast
Mon, 2014-04-21 06:48
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
2,610 by rmoretti
Fri, 2016-06-17 10:36
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
2,611 by smlewis
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
2,611 by felipet
Mon, 2014-04-21 06:47
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,617 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
2,620 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
2,628 by jrcf
Mon, 2015-10-05 21:32
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,637 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
2,643 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
2,654 by rmoretti
Mon, 2017-02-20 08:09
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
2,656 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
2,661 by rmoretti
Mon, 2018-03-19 12:12
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
2,661 by glemmon
Mon, 2014-04-21 06:47
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
2,664 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,666 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
2,669 by beowulfey
Tue, 2015-06-23 16:10
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
2,681 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,682 by smlewis
Mon, 2014-04-21 06:48
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
2,691 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
2,703 by kbuhr
Mon, 2016-03-28 01:08
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
2,708 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
2,711 by mdyini
Mon, 2014-04-21 06:47
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
2,714 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
2,721 by smlewis
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
2,725 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
2,738 by nkemjika
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
2,759 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
2,768 by eskici
Mon, 2014-04-21 06:47
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,770 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
2,776 by lanselibai
Fri, 2014-09-26 14:58
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
2,779 by dgront
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,787 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
2,788 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
2,788 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
2,790 by jtmacd
Fri, 2015-12-04 03:11
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
2,795 by jarod
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
2,810 by rmoretti
Thu, 2017-08-24 08:19
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
2,818 by rmoretti
Thu, 2017-06-01 08:52
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
2,818 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
2,820 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
2,821 by mumdonar
Mon, 2014-04-21 06:48
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
2,823 by felipet
Fri, 2017-06-16 11:42
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
2,841 by rmoretti
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
2,841 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
2,855 by aloshbau
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
2,857 by agulsevin
Mon, 2014-04-21 06:48
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
2,861 by yzhou
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
2,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
2,865 by RMJ
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
2,868 by smlewis
Fri, 2014-03-07 13:02
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
2,871 by protos_heis
Tue, 2014-08-05 12:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
2,872 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
2,895 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
2,902 by rmoretti
Tue, 2015-03-31 08:20
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
2,906 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
2,909 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
2,917 by aroop
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
2,935 by rmoretti
Mon, 2014-04-21 06:47
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
2,937 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
2,948 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
2,951 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
2,953 by sacch
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
2,957 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
2,959 by Loki01
Thu, 2018-02-15 13:54
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
2,983 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
2,987 by rmoretti
Tue, 2016-07-12 09:35
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,004 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,004 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,011 by kxiao
Thu, 2014-06-05 08:37
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
3,016 by gw
Mon, 2014-04-21 06:47
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
3,018 by rmoretti
Tue, 2017-07-18 09:00
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,024 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,055 by rmoretti
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,106 by cossio
Mon, 2015-01-19 07:10
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,122 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,139 by rmoretti
Mon, 2014-04-21 06:48
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
3,158 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,158 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,165 by rmoretti
Mon, 2014-04-21 06:48
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,166 by sacch
Mon, 2014-04-21 06:47
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
3,180 by rmoretti
Mon, 2015-02-09 12:04
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,204 by yperez
Mon, 2014-04-21 06:47
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
3,205 by ytao
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,209 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
3,221 by smlewis
Tue, 2017-07-04 15:42
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,227 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,252 by lanselibai
Tue, 2014-09-30 02:28
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,258 by ks
Mon, 2016-09-12 03:14
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
3,278 by rmoretti
Mon, 2017-01-23 08:52
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,282 by parmef
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
3,283 by smlewis
Fri, 2014-03-07 14:09
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,288 by rmoretti
Wed, 2014-07-02 16:55
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,291 by libai2098
Mon, 2014-04-21 06:47
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,296 by pdbb
Mon, 2014-04-21 06:47
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
3,313 by AmelieH
Wed, 2014-11-19 11:26
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,314 by attesor
Tue, 2015-01-27 02:20
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,330 by rmoretti
Wed, 2015-09-09 12:08
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