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Rosetta 3 - Applications

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Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,647 by rmoretti
Fri, 2019-03-29 09:30
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
3,990 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
1,292 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,114 by danpf
Fri, 2019-09-06 11:29
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
3,582 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
2,919 by smlewis
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
2,189 by MJG
Tue, 2017-04-04 23:59
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,453 by rmoretti
Wed, 2015-09-09 12:08
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
3,944 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,543 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
533 by Corvin
Wed, 2020-11-25 02:58
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
2,113 by subha
Fri, 2017-06-09 15:42
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
2,904 by dgront
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
3,800 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,073 by danpf
Fri, 2020-02-21 18:32
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
937 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
1,076 by danpf
Tue, 2020-05-12 10:58
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
807 by Astghik
Thu, 2020-10-15 00:48
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
3,316 by rmoretti
Mon, 2015-02-09 12:04
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,013 by mkoohim
Mon, 2014-04-21 06:47
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
1,814 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,197 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,053 by aroop
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
2,346 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
4,547 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
124 by nc-ring
Tue, 2021-05-04 12:26
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
2,292 by smlewis
Tue, 2017-07-11 07:53
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
5,325 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
1,588 by rmoretti
Tue, 2019-07-09 10:13
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,393 by ks
Mon, 2016-09-12 03:14
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
5,164 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
5,092 by rmoretti
Tue, 2015-11-24 15:30
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
4,294 by siciliu
Thu, 2014-04-10 09:50
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
3,735 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,280 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
4,815 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
4,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,262 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
7,238 by deltag
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
2,319 by tsztain
Tue, 2018-12-11 13:41
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,195 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
3,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
1,258 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
3,846 by felipet
Wed, 2015-02-11 05:13
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
3,451 by AmelieH
Wed, 2014-11-19 11:26
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
5,073 by rmoretti
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,057 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
693 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,251 by rmoretti
Tue, 2015-03-31 08:56
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
920 by brspurri
Wed, 2020-06-03 13:20
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
3,736 by lanselibai
Wed, 2014-10-15 03:52
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
7,523 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
5
3,854 by Nolanm15
Tue, 2020-06-30 08:43
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
2,978 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
452 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,069 by everyday847
Wed, 2020-05-20 08:52
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
3,830 by justin
Mon, 2014-04-21 06:47
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
1,211 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
5,682 by attesor
Wed, 2015-10-21 13:53
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
1,441 by rmoretti
Thu, 2020-01-30 15:42
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
2,262 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,244 by smlewis
Mon, 2019-09-23 11:42
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
5,021 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
1,157 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,474 by smlewis
Fri, 2017-01-20 08:14
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
5
957 by jadolfbr
Fri, 2020-07-24 07:24
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
4,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
4,781 by brspurri
Mon, 2014-04-21 06:47
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
3,007 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
2,768 by rmoretti
Mon, 2018-11-12 14:31
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
4,503 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
3,157 by sjyang7
Sat, 2017-06-03 06:09
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,332 by yperez
Mon, 2014-04-21 06:47
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
2,284 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
4,213 by rmoretti
Fri, 2015-04-24 12:02
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
3,020 by yzhou
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,894 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
2,736 by David Weis
Mon, 2017-03-13 10:59
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
3,548 by wangyr
Mon, 2014-04-21 06:47
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
3,024 by felipet
Fri, 2017-06-16 11:42
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
988 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
2,009 by Yero
Thu, 2019-07-18 01:39
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,130 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
6,675 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
4,759 by rmoretti
Mon, 2015-10-12 15:10
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
5
972 by mieczyslaw
Thu, 2020-10-29 07:52
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,048 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
3,900 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
3,082 by rmoretti
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
4,445 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
3,033 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
2,043 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
2,545 by attesor
Thu, 2017-03-16 01:21
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
2,664 by fradom
Tue, 2017-12-05 01:52
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
4,463 by eskici
Mon, 2014-04-21 06:47
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
4,529 by Gerdes
Fri, 2014-02-07 06:48
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
327 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
734 by jadolfbr
Sun, 2020-12-06 17:41
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