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Rosetta 3 - Applications

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Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
70 by agctomer
Tue, 2021-01-19 22:45
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
1,168 by esozdemir
Thu, 2019-06-13 12:19
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
247 by brspurri
Fri, 2020-08-28 09:11
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
264 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
630 by brspurri
Tue, 2020-08-18 09:57
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
771 by brspurri
Wed, 2020-06-03 13:20
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
470 by brspurri
Thu, 2020-05-14 12:24
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,677 by smlewis
Mon, 2017-01-23 06:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
309 by jlawrie
Fri, 2020-08-14 14:09
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
2,823 by rmoretti
Thu, 2017-06-01 08:52
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
4,910 by rmoretti
Tue, 2015-11-24 15:30
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,070 by dnamkr
Thu, 2019-12-26 10:22
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
1,826 by rmoretti
Thu, 2017-02-02 09:02
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
9,142 by rmoretti
Wed, 2018-11-21 15:45
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
442 by danpf
Thu, 2020-09-24 13:44
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
2,825 by rmoretti
Thu, 2017-01-19 09:11
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
610 by haom
Tue, 2020-06-16 05:55
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
838 by xingqing326
Tue, 2020-04-21 19:11
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
6,127 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
8,685 by joeg
Mon, 2014-04-21 06:47
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
4,337 by Gerdes
Fri, 2014-02-07 06:48
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,149 by rmoretti
Tue, 2018-01-16 07:24
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,970 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,727 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
690 by rmoretti
Mon, 2019-08-26 12:57
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,347 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,297 by rmoretti
Fri, 2016-10-14 08:56
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,043 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,076 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
860 by kamau
Wed, 2017-12-13 14:31
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
577 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
2,793 by jtmacd
Fri, 2015-12-04 03:11
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,591 by rmoretti
Fri, 2016-04-29 08:26
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
242 by zdaw
Tue, 2020-12-15 15:38
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
1,770 by Yero
Thu, 2019-07-18 01:39
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,063 by mpacella
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
4,646 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
6,070 by rmoretti
Fri, 2014-02-07 08:01
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
1,622 by bjharris
Sun, 2020-08-23 14:03
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
610 by rmoretti
Mon, 2019-06-24 13:43
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,073 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,121 by rmoretti
Sat, 2017-04-15 13:30
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,472 by mtyras
Mon, 2015-06-08 03:18
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
3,878 by lanselibai
Tue, 2014-11-11 15:28
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
11,728 by grisha
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
8,368 by rmoretti
Mon, 2014-04-21 06:47
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
1,795 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
4
2,501 by Morrian_Lynn
Thu, 2020-03-05 10:07
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,362 by weehee
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,470 by rmoretti
Tue, 2017-08-22 09:03
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,194 by rmoretti
Tue, 2018-01-30 07:51
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,380 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
622 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,463 by Ashafix
Mon, 2014-04-21 06:48
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,471 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,238 by rmoretti
Fri, 2015-01-02 11:06
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
274 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
3,966 by weitzner
Mon, 2014-04-21 06:47
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,740 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
987 by rmoretti
Fri, 2017-03-24 13:39
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
2,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
3,793 by fred
Tue, 2014-04-01 08:24
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
228 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
411 by almeida85
Wed, 2020-09-02 06:14
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
542 by Astghik
Thu, 2020-10-15 00:48
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,177 by rmoretti
Tue, 2016-07-12 09:05
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
3,738 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
9,212 by rmoretti
Thu, 2014-04-24 14:43
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,398 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
517 by enmirts
Wed, 2018-03-28 10:34
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
53 by almeida85
Thu, 2021-02-11 02:56
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
363 by CATarr
Wed, 2019-10-09 19:05
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
2,353 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
1,763 by Corvin
Tue, 2020-11-10 01:22
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
5,225 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
774 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
1,560 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,196 by rmoretti
Fri, 2015-01-02 11:45
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
1,523 by subha
Fri, 2018-04-20 12:49
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,290 by ast
Mon, 2014-04-21 06:48
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
937 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
3,626 by fede
Wed, 2020-09-23 11:24
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
2,945 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
5,489 by cossio
Mon, 2016-11-21 07:56
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,328 by rmoretti
Mon, 2015-05-25 12:37
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
1,843 by smlewis
Wed, 2017-12-13 09:54
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
213 by Kazu
Wed, 2020-05-20 08:49
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,195 by brspurri
Fri, 2017-03-24 11:35
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
11,161 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
2,794 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,018 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
3,376 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
923 by smlewis
Thu, 2017-02-09 21:50
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,327 by smlewis
Fri, 2017-01-20 08:14
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
17,310 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,253 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,577 by jrcf
Mon, 2016-02-15 17:59
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,476 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
880 by Nicole Deng
Tue, 2020-11-03 19:07
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