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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
3,232 by Loki01
Thu, 2018-02-15 13:54
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
3,234 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,242 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,248 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,251 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,251 by cossio
Mon, 2015-01-19 07:10
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,290 by sacch
Mon, 2014-04-21 06:47
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
3,301 by ytao
Mon, 2014-04-21 06:47
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
3,316 by rmoretti
Mon, 2015-02-09 12:04
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,320 by lanselibai
Tue, 2014-09-30 02:28
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,332 by yperez
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,356 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,358 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,378 by parmef
Mon, 2014-04-21 06:47
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,378 by pdbb
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,393 by ks
Mon, 2016-09-12 03:14
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
3,394 by petrikigor
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
3,401 by smlewis
Fri, 2014-03-07 14:09
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,402 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,405 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
3,413 by smlewis
Tue, 2017-07-04 15:42
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,437 by attesor
Tue, 2015-01-27 02:20
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
3,451 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,453 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,461 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,471 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,472 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
3,476 by rmoretti
Mon, 2017-01-23 08:52
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,490 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
3,516 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,518 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,543 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
3,548 by wangyr
Mon, 2014-04-21 06:47
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
3,562 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
3,573 by frichter
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
3,574 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
3,582 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
3,586 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
3,590 by rmoretti
Mon, 2014-04-21 06:47
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
3,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
3,598 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
3,614 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
3,621 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
3,642 by rmoretti
Thu, 2015-04-30 16:46
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
3,647 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
3,651 by smlewis
Mon, 2014-04-21 06:47
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
3,652 by zcrook
Tue, 2014-11-25 10:27
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
3,680 by fred
Mon, 2014-04-21 06:48
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
3,701 by jianqing
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
3,717 by smlewis
Mon, 2014-04-21 06:47
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
3,717 by lanselibai
Wed, 2014-09-24 13:21
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
3,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
3,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
3,735 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
3,736 by lanselibai
Wed, 2014-10-15 03:52
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
3,746 by xfliu
Mon, 2014-04-21 06:47
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
3,747 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
3,750 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
3,750 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
3,754 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
3,786 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
3,797 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
3,800 by wsgosal
Mon, 2014-04-21 06:48
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
3,830 by justin
Mon, 2014-04-21 06:47
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
3,846 by felipet
Wed, 2015-02-11 05:13
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
3,847 by fede
Wed, 2020-09-23 11:24
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
5
3,854 by Nolanm15
Tue, 2020-06-30 08:43
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
3,890 by rmoretti
Thu, 2014-11-20 10:46
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
3,892 by lzx32
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,894 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
3,900 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
3,901 by fred
Tue, 2014-04-01 08:24
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
3,909 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
3,915 by msardejani
Sat, 2016-10-01 12:55
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
3,945 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
3,990 by rmoretti
Mon, 2014-02-24 09:12
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
4,009 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
4,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,013 by mkoohim
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
4,030 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
4,036 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,048 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
4,071 by jljbbc
Mon, 2014-04-21 06:47
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
4,076 by lanselibai
Thu, 2014-11-20 02:15
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,115 by weitzner
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
4,129 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
4,133 by rmoretti
Tue, 2017-06-20 09:02
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
4,176 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
4,183 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,195 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,197 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
4,213 by rmoretti
Fri, 2015-04-24 12:02
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
4,220 by afmo
Thu, 2014-05-22 01:19
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,262 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
4,294 by siciliu
Thu, 2014-04-10 09:50
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
4,350 by lzx32
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
4,386 by jadolfbr
Mon, 2014-04-21 06:48
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