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Topic / Topic starter | Replies | Views | Last post | |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
3,544 |
by nannemdp Mon, 2022-11-28 09:39 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
3,545 |
by aloshbau Mon, 2021-03-01 20:06 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,545 |
by smlewis Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,558 |
by Ashafix Mon, 2014-04-21 06:48 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,558 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,574 |
by ajasja Wed, 2019-05-15 15:40 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,580 |
by rmoretti Thu, 2017-04-20 13:59 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,580 |
by elpipasp Thu, 2023-10-19 04:37 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,582 |
by alexn Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,585 |
by smlewis Mon, 2014-04-21 06:47 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,591 |
by lanselibai Mon, 2014-10-06 15:30 |
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RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
3,598 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,612 |
by jennifer Fri, 2015-03-27 05:56 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,622 |
by cn Mon, 2014-04-21 06:47 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,625 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
3,627 |
by cossio Fri, 2018-10-12 04:43 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,629 |
by dee2711453 Fri, 2016-03-11 21:32 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,632 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,632 |
by maxebert Mon, 2014-04-21 06:47 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,645 |
by JadAbbass Mon, 2014-04-21 06:48 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,648 |
by smlewis Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,655 |
by lanselibai Tue, 2015-01-13 14:25 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,655 |
by smlewis Mon, 2014-04-21 06:48 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,662 |
by loreseeker Mon, 2014-04-21 06:47 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,666 |
by rmoretti Mon, 2014-04-21 06:48 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,673 |
by e3lm Tue, 2021-09-14 10:02 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,695 |
by rmoretti Tue, 2016-07-12 09:05 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,707 |
by chelsell Wed, 2015-05-27 14:36 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,721 |
by rmoretti Fri, 2020-07-10 09:59 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,723 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,727 |
by rmoretti Thu, 2015-09-17 12:47 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,731 |
by erin_cutts Mon, 2014-04-21 06:48 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,738 |
by m_grisewood Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,752 |
by rmoretti Thu, 2018-06-28 12:44 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,753 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,754 |
by weehee Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,758 |
by brspurri Fri, 2017-03-24 11:35 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,766 |
by subha Fri, 2017-06-09 15:42 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,778 |
by felipet Mon, 2014-04-21 06:47 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,779 |
by brspurri Sat, 2017-08-26 07:08 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,783 |
by rosend Tue, 2015-11-17 12:12 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,786 |
by mtyras Mon, 2015-06-08 03:18 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,786 |
by jrporter Wed, 2017-07-05 06:30 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,794 |
by eskici Mon, 2014-04-21 06:47 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
3,798 |
by rmoretti Tue, 2017-10-10 09:58 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,811 |
by jhm13c Thu, 2017-03-02 12:01 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,828 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,830 |
by harshkhare Mon, 2014-04-21 06:47 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,836 |
by max Thu, 2014-11-27 02:56 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,840 |
by rmoretti Fri, 2018-11-23 11:23 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,852 |
by G Mustafa Thu, 2018-10-18 05:31 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,860 |
by rmoretti Thu, 2015-04-16 10:38 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,866 |
by mumdonar Mon, 2014-04-21 06:48 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,869 |
by ast Mon, 2014-04-21 06:48 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,871 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,883 |
by lanselibai Tue, 2015-02-24 02:36 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,884 |
by smlewis Mon, 2016-05-02 08:20 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,905 |
by glemmon Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,914 |
by Marius1987 Mon, 2016-03-14 04:34 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,916 |
by rmoretti Mon, 2014-04-21 06:48 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,924 |
by dswhit Tue, 2015-04-21 10:14 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,929 |
by rmoretti Fri, 2019-03-29 09:30 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,931 |
by Pernille Thu, 2014-07-03 07:21 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,939 |
by lanselibai Fri, 2014-09-26 14:58 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,939 |
by rmoretti Tue, 2016-07-12 09:41 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,940 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,946 |
by Anpu Tue, 2018-09-25 18:53 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,948 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,950 |
by jarod Mon, 2014-04-21 06:47 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,963 |
by rmoretti Fri, 2015-06-19 13:53 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
3,965 |
by xingqing326 Tue, 2020-04-21 19:11 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,968 |
by rmoretti Tue, 2015-11-10 11:35 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,974 |
by rmoretti Mon, 2014-05-12 15:16 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,975 |
by xun Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
4,006 |
by MJG Tue, 2017-04-04 23:59 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,026 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,026 |
by RMJ Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,026 |
by aloshbau Mon, 2014-04-21 06:47 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
4,039 |
by smlewis Sat, 2017-12-23 15:56 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
4,048 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
4,055 |
by smlewis Tue, 2017-07-11 07:53 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
4,058 |
by agulsevin Mon, 2014-04-21 06:48 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,062 |
by rmoretti Mon, 2014-05-12 08:45 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
4,065 |
by nkemjika Mon, 2014-04-21 06:47 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
4,065 |
by smlewis Wed, 2017-12-13 09:54 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
4,070 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,077 |
by jtmacd Fri, 2015-12-04 03:11 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
4,085 |
by jrcf Mon, 2015-09-21 11:10 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
4,097 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
4,104 |
by tong Sun, 2018-06-24 23:30 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
4,117 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
4,123 |
by rmoretti Mon, 2015-10-12 15:20 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,124 |
by rmoretti Tue, 2019-07-09 10:13 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,128 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
4,130 |
by jrcf Mon, 2015-10-05 21:32 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
1 |
4,132 |
by FJOM Wed, 2023-05-03 07:21 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
4,147 |
by Denise Thu, 2017-06-15 04:26 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
4,165 |
by chandana Tue, 2022-08-09 20:27 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,183 |
by Yero Thu, 2019-07-18 01:39 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
4,189 |
by rmoretti Mon, 2014-04-21 06:48 |
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