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Rosetta 3 - Applications
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,952 |
by smlewis Mon, 2017-12-04 12:18 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,951 |
by rmoretti Mon, 2019-06-24 13:46 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
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1,948 |
by erpannec Thu, 2022-09-15 05:17 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,945 |
by smlewis Thu, 2016-12-08 15:50 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,941 |
by smlewis Wed, 2016-03-09 04:11 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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1,935 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,935 |
by ylwang Thu, 2020-03-12 20:42 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,930 |
by vmulligan Tue, 2020-03-17 11:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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1,921 |
by everyday847 Wed, 2020-12-09 21:46 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,911 |
by rmoretti Wed, 2018-11-21 15:31 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,907 |
by rmoretti Tue, 2021-04-20 13:27 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,905 |
by rmoretti Fri, 2018-08-03 08:26 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,905 |
by rmoretti Mon, 2019-08-26 12:57 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,902 |
by smlewis Thu, 2017-06-22 13:31 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,899 |
by rmoretti Fri, 2017-03-24 13:39 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
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1,898 |
by danielles Mon, 2014-04-21 06:47 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,896 |
by rmoretti Fri, 2019-04-26 12:13 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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1,892 |
by chenna Tue, 2021-10-12 20:51 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,890 |
by smlewis Fri, 2016-12-23 07:04 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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1,889 |
by jlawrie Wed, 2020-08-12 08:56 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,887 |
by vmulligan Thu, 2019-06-13 14:59 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,885 |
by smlewis Fri, 2016-11-11 08:33 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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1,882 |
by jlawrie Wed, 2020-08-12 07:27 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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1,881 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,879 |
by zdaw Tue, 2020-12-15 15:38 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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1,876 |
by amorin Fri, 2021-02-12 08:53 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,876 |
by Danielsebas Tue, 2019-09-17 01:03 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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1,875 |
by tylerborrman Tue, 2021-02-09 16:33 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,864 |
by matteoferla Sat, 2021-06-19 03:07 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,862 |
by hdelrisco Fri, 2019-10-18 17:16 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,854 |
by xfradera Tue, 2023-02-28 10:13 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,852 |
by rmoretti Tue, 2017-10-10 09:54 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,849 |
by rmoretti Sun, 2019-08-25 19:15 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
1 |
1,847 |
by danpf Sun, 2020-08-30 22:23 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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1,838 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,832 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
1,830 |
by jlawrie Thu, 2020-08-20 11:00 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,829 |
by cm21 Wed, 2020-05-20 11:22 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
1 |
1,826 |
by rmoretti Tue, 2018-04-10 15:34 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
1,826 |
by matteoferla Tue, 2020-08-04 09:30 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,823 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,820 |
by rmoretti Thu, 2017-05-18 13:51 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,818 |
by Ruska322 Fri, 2019-09-06 07:13 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,818 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
1,802 |
by jeliazkov Mon, 2019-06-17 06:03 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
0 |
1,801 |
by mahendra Mon, 2022-11-14 02:51 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,797 |
by jlawrie Wed, 2020-08-12 08:57 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,796 |
by David Hoover Mon, 2014-04-21 06:47 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,793 |
by jadolfbr Thu, 2017-06-01 10:00 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,792 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,792 |
by petrikigor Mon, 2014-04-21 06:47 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
1 |
1,790 |
by smlewis Thu, 2017-02-09 21:50 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,788 |
by nannemdp Thu, 2019-04-25 07:58 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,785 |
by rmoretti Mon, 2019-06-24 15:19 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,774 |
by benhardy Wed, 2020-09-30 04:24 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,770 |
by Sandy Tue, 2016-05-31 18:48 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,766 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,765 |
by rmoretti Tue, 2022-10-04 07:57 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,765 |
by chrisHKL Wed, 2020-03-04 10:49 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,764 |
by almeida85 Thu, 2022-08-11 00:58 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,762 |
by smlewis Mon, 2018-05-07 11:42 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
2 |
1,759 |
by code_Monkey Tue, 2021-04-27 12:11 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,759 |
by JackMaguire Fri, 2019-08-16 07:41 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,753 |
by kamau Wed, 2017-12-13 14:31 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,749 |
by Hirbond Wed, 2022-10-26 12:57 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,749 |
by rmoretti Mon, 2017-03-06 12:39 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,748 |
by rmoretti Wed, 2018-02-21 15:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,744 |
by tuleshwori Thu, 2020-05-21 02:08 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,740 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,737 |
by rmoretti Fri, 2019-03-29 09:58 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,721 |
by rmoretti Mon, 2019-06-24 13:43 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,709 |
by rmoretti Thu, 2019-05-09 15:40 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,708 |
by almeida85 Wed, 2020-09-02 06:14 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
1 |
1,706 |
by rmoretti Tue, 2017-10-10 10:08 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,700 |
by rmoretti Thu, 2018-09-20 09:23 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,691 |
by almeida85 Tue, 2022-10-25 02:32 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
1,690 |
by brspurri Thu, 2020-05-14 12:24 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,681 |
by shaunmk Mon, 2015-04-27 02:33 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
0 |
1,674 |
by lanselibai Sun, 2015-01-11 10:50 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,673 |
by guowuchen Mon, 2022-03-07 23:34 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,667 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,665 |
by alex Sun, 2017-02-19 08:12 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,664 |
by rmoretti Fri, 2018-08-24 11:28 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
1,662 |
by Astghik Thu, 2020-12-03 02:35 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,659 |
by rmoretti Mon, 2019-08-26 12:49 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
1,657 |
by danpf Fri, 2020-02-21 18:37 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,650 |
by rmoretti Tue, 2018-04-10 15:29 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,649 |
by rmoretti Wed, 2019-07-10 10:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,648 |
by rmoretti Fri, 2018-05-18 12:28 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,648 |
by rmoretti Fri, 2018-08-03 07:54 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
1,644 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
1,642 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
1,641 |
by rmoretti Tue, 2017-10-17 09:03 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
1,641 |
by rmoretti Mon, 2018-01-15 16:14 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,641 |
by jennifer Wed, 2015-04-08 05:29 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
1 |
1,634 |
by smlewis Tue, 2019-09-24 12:43 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,633 |
by rmoretti Fri, 2019-04-05 00:18 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,631 |
by yliang20 Wed, 2022-06-15 13:46 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
1,629 |
by aloshbau Fri, 2020-01-10 16:48 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
1,622 |
by matteoferla Thu, 2020-07-02 07:27 |
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