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Rosetta 3 - Applications
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Views | Last post | |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
4,015 |
by xun Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,805 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,977 |
by rmoretti Tue, 2016-07-12 09:41 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,760 |
by weitzner Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,785 |
by marinok Mon, 2020-05-11 12:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
5,168 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
3,442 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
2,379 |
by DGR95 Wed, 2021-04-28 16:13 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,892 |
by jadolfbr Tue, 2014-10-07 16:05 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,539 |
by sacch Mon, 2014-04-21 06:47 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
1,943 |
by erpannec Thu, 2022-09-15 05:17 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,823 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
4,047 |
by xingqing326 Tue, 2020-04-21 19:11 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,318 |
by rmoretti Tue, 2016-07-12 09:35 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,088 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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3,284 |
by ziruiw Fri, 2021-04-30 12:01 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
4,982 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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3,509 |
by ladimafakher Thu, 2018-11-01 03:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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5,494 |
by rmoretti Mon, 2014-04-21 06:48 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
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7,149 |
by IAndre Mon, 2014-04-21 06:47 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,670 |
by elpipasp Thu, 2023-10-19 04:37 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
6,250 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,687 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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2,265 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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5,697 |
by fede Wed, 2020-09-23 11:24 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
4,638 |
by rmoretti Tue, 2015-03-31 08:20 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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5,186 |
by smlewis Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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5,597 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,836 |
by jrporter Wed, 2017-07-05 06:30 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,371 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
3,074 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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4,417 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,852 |
by rmoretti Mon, 2017-02-20 08:09 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
4,275 |
by dgront Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,733 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,862 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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2,844 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
4,282 |
by mdyini Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,454 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,900 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,787 |
by brspurri Tue, 2020-08-18 09:57 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
5,390 |
by yogeshkd Mon, 2014-04-21 06:47 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,440 |
by rmoretti Mon, 2023-02-06 15:06 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,798 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,758 |
by almeida85 Thu, 2022-08-11 00:58 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
4,142 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,617 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
2,165 |
by nannemdp Wed, 2021-02-03 08:52 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
5,008 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
6,399 |
by lanselibai Sun, 2015-03-01 15:00 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
6,366 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
6,118 |
by jadolfbr Mon, 2014-04-21 06:48 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
4,200 |
by Denise Thu, 2017-06-15 04:26 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,952 |
by cossio Mon, 2015-01-19 07:10 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
2,506 |
by haom Tue, 2020-06-16 05:55 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,625 |
by maruhuang Thu, 2019-09-26 18:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
2,585 |
by vmulligan Mon, 2020-03-02 13:40 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
4,797 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
2,338 |
by agctomer Sun, 2021-01-31 01:06 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,993 |
by rmoretti Fri, 2019-03-29 09:30 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
2,143 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
14,661 |
by smlewis Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
5,181 |
by fred Mon, 2014-04-21 06:48 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,886 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
4 |
3,204 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
3,098 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
3,154 |
by smlewis Wed, 2021-12-08 13:02 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
5,129 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
4,065 |
by MJG Tue, 2017-04-04 23:59 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,371 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
5,052 |
by rmoretti Wed, 2015-09-09 12:08 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,548 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
5,353 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,646 |
by Corvin Wed, 2020-11-25 02:58 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,861 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
5,346 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,904 |
by danpf Fri, 2020-02-21 18:32 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
5,248 |
by protos_heis Mon, 2014-04-21 06:47 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,826 |
by subha Fri, 2017-06-09 15:42 |
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Error about rifdocking step 15 by ng98 » Sun, 2024-01-21 16:30 |
4 |
438 |
by ng98 Tue, 2024-01-23 17:01 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
3,323 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
5,625 |
by rmoretti Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
5,054 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,831 |
by jljbbc Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
4,245 |
by fred Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,842 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
5,543 |
by jadolfbr Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
7,508 |
by lanselibai Fri, 2014-10-17 05:10 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
5 |
4,331 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,837 |
by justin Mon, 2014-04-21 06:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
4,131 |
by smlewis Tue, 2017-07-11 07:53 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
2,800 |
by nc-ring Tue, 2021-05-04 12:26 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
5 |
5,437 |
by ks Mon, 2016-09-12 03:14 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
7,646 |
by linucks Mon, 2016-06-20 12:02 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,208 |
by rmoretti Tue, 2019-07-09 10:13 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
7,440 |
by rmoretti Tue, 2015-11-24 15:30 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
5 |
6,377 |
by siciliu Thu, 2014-04-10 09:50 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
7,123 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
3,590 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
6,387 |
by Anonymous Mon, 2014-04-21 06:47 |
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