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Rosetta 3 - Applications
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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4,218 |
by rmoretti Tue, 2019-07-09 10:13 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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4,226 |
by ahonegger Mon, 2014-04-21 06:47 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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4,237 |
by rmoretti Wed, 2016-09-14 02:05 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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4,239 |
by rmoretti Tue, 2016-07-12 09:30 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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4,244 |
by kbuhr Mon, 2016-03-28 01:08 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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4,250 |
by fred Mon, 2014-04-21 06:47 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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4,254 |
by smlewis Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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4,255 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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4,258 |
by Yero Thu, 2019-07-18 01:39 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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4,267 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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4,269 |
by smlewis Mon, 2014-04-21 06:47 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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4,270 |
by chandana Tue, 2022-08-09 20:27 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
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4,281 |
by dgront Mon, 2014-04-21 06:47 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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4,287 |
by mdyini Mon, 2014-04-21 06:47 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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4,288 |
by bjharris Sun, 2020-08-23 14:03 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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4,295 |
by protos_heis Tue, 2014-08-05 12:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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4,302 |
by ytao Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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4,319 |
by beowulfey Tue, 2015-06-23 16:10 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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4,336 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,357 |
by lanselibai Tue, 2014-09-30 02:28 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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4,371 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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4,377 |
by cdegut Fri, 2017-11-03 05:50 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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4,378 |
by smlewis Mon, 2014-04-21 06:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
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4,394 |
by rmoretti Fri, 2016-06-17 10:36 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,415 |
by rmoretti Mon, 2014-04-21 06:48 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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4,417 |
by ldx022 Tue, 2022-11-29 08:38 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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4,422 |
by dfcoelho Tue, 2017-10-17 11:52 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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4,425 |
by rmoretti Mon, 2014-04-21 06:48 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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4,439 |
by smlewis Fri, 2017-01-20 08:14 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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4,455 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
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4,461 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,463 |
by parmef Mon, 2014-04-21 06:47 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,487 |
by sacch Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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4,488 |
by gw Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,488 |
by pdbb Mon, 2014-04-21 06:47 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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4,529 |
by attesor Thu, 2017-03-16 01:21 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,539 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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4,540 |
by smlewis Fri, 2014-03-07 13:02 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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4,541 |
by sacch Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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4,550 |
by jadolfbr Thu, 2015-09-03 16:18 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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4,559 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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4,565 |
by tingting Tue, 2022-03-15 23:55 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,594 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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4,605 |
by smlewis Mon, 2014-04-21 06:47 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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4,613 |
by rmoretti Fri, 2017-12-01 12:05 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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4,619 |
by libai2098 Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,624 |
by lanselibai Thu, 2014-10-23 03:26 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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4,624 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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4,633 |
by Derek Smith Wed, 2016-02-03 05:47 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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4,642 |
by rmoretti Tue, 2015-03-31 08:20 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,729 |
by lkrathn Mon, 2014-04-21 06:48 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,739 |
by kxiao Thu, 2014-06-05 08:37 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
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4,741 |
by aroop Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,742 |
by rmoretti Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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4,762 |
by dfcoelho Tue, 2018-10-16 09:05 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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4,771 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,777 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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4,783 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
4,795 |
by David Weis Mon, 2017-03-13 10:59 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,803 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,806 |
by lanselibai Mon, 2014-11-03 13:15 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,818 |
by rmoretti Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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4,857 |
by rmoretti Mon, 2017-02-20 08:09 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,859 |
by fukamitka Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,863 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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4,866 |
by smlewis Wed, 2018-08-08 15:48 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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4,869 |
by frichter Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,876 |
by rmoretti Mon, 2016-09-05 10:59 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,886 |
by rmoretti Thu, 2017-01-19 09:11 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,935 |
by rmoretti Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,938 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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4,962 |
by cossio Mon, 2015-01-19 07:10 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,964 |
by rmoretti Mon, 2018-11-12 14:31 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,984 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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5,003 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
5,004 |
by smlewis Fri, 2014-03-07 14:09 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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5,008 |
by fradom Tue, 2017-12-05 01:52 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
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5,012 |
by smlewis Mon, 2014-04-21 06:47 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
5,021 |
by yzhou Mon, 2014-04-21 06:47 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
5,041 |
by Sajjad Wed, 2022-11-30 11:50 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
5,056 |
by rmoretti Wed, 2015-09-09 12:08 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
5,056 |
by yperez Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
5,059 |
by rmoretti Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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5,061 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
5,063 |
by jianqing Mon, 2014-04-21 06:47 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
2 |
5,078 |
by zcrook Tue, 2014-11-25 10:27 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
5,078 |
by lanselibai Wed, 2014-09-24 13:21 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
5,078 |
by Anonymous Mon, 2014-04-21 06:47 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,092 |
by attesor Tue, 2015-01-27 02:20 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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5,097 |
by rmoretti Thu, 2017-06-01 08:52 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
5,133 |
by rmoretti Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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5,160 |
by tsztain Tue, 2018-12-11 13:41 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
5,171 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
5,184 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
5,185 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
5,185 |
by rmoretti Wed, 2014-07-02 16:55 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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5,190 |
by fred Mon, 2014-04-21 06:48 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
5,191 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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5,195 |
by lanselibai Thu, 2014-11-20 02:15 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
5,251 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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