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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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5,112 by admin
Fri, 2015-09-04 16:17
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
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210 by Anpu
Thu, 2018-09-27 23:36
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,147 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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846 by abhishek
Mon, 2014-04-21 06:47
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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843 by justin
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,122 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
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271 by ac.research
Mon, 2018-05-14 08:27
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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178 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
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339 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
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1,573 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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257 by a.book
Wed, 2018-10-03 15:56
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
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507 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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797 by justin
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
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801 by IgaK
Mon, 2014-04-21 06:47
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
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277 by pmit
Thu, 2018-05-03 01:48
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
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529 by fmerino
Mon, 2017-10-16 04:02
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
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342 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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326 by David
Tue, 2019-01-22 12:23
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
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1,132 by jurkm
Mon, 2014-04-21 06:47
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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813 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
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940 by DanielK
Mon, 2014-04-21 06:47
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
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314 by dasdevashishdas
Fri, 2018-10-12 00:55
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
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1,140 by Trentage
Mon, 2014-04-21 06:47
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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106 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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111 by yinasun
Fri, 2019-07-26 02:17
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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761 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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338 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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256 by ela
Fri, 2018-08-31 02:53
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
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197 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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1,971 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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332 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
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297 by Swillard
Sun, 2018-07-01 13:07
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
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1,616 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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1,002 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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896 by vasek
Mon, 2014-04-21 06:48
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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284 by obdulia
Wed, 2018-04-18 00:45
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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1,586 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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464 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
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893 by tevang
Mon, 2014-04-21 06:47
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
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64 by Kazu
Thu, 2019-10-31 17:48
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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254 by zhoubin
Fri, 2019-01-04 13:14
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
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818 by exchhattu
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
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908 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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3,027 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,387 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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747 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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752 by DanielK
Mon, 2014-04-21 06:47
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
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265 by bazzoli
Wed, 2018-10-10 01:59
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
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836 by albumns
Mon, 2014-04-21 06:47
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
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807 by myang
Mon, 2014-04-21 06:47
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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374 by jferrie
Mon, 2018-04-23 15:25
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
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172 by BioPython
Sun, 2019-05-12 20:07
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
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1,096 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
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793 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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547 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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716 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
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112 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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784 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
886 by exchhattu
Mon, 2014-04-21 06:47
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
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249 by yangshen12
Fri, 2018-10-26 12:34
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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840 by sdh
Mon, 2014-04-21 06:47
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
263 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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762 by tricia
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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908 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
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313 by bio_james
Wed, 2017-12-13 09:13
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
810 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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831 by gobli033
Mon, 2014-04-21 06:47
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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942 by w107kdk
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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818 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
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289 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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753 by albumns
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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792 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
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309 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
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161 by sayan500
Tue, 2019-07-30 22:20
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
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361 by rlwoltz
Fri, 2019-02-01 10:31
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
851 by rmoretti
Tue, 2015-10-27 08:46
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
2,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
941 by smlewis
Mon, 2014-04-21 06:48
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,121 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
975 by rmoretti
Mon, 2015-05-25 11:07
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
705 by rmoretti
Wed, 2016-06-29 10:20
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
972 by smlewis
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
1,286 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
213 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,674 by smlewis
Tue, 2014-12-23 13:58
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
782 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
590 by smlewis
Mon, 2018-04-16 16:32
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
239 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
1,465 by smlewis
Mon, 2014-04-21 06:47
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,204 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
1
350 by dfcoelho
Tue, 2018-10-16 08:35
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,178 by rmoretti
Tue, 2014-06-10 11:34
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,053 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
1,122 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
774 by rmoretti
Mon, 2017-05-15 09:03
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,001 by smlewis
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
158 by smlewis
Wed, 2019-05-29 13:21
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
2,609 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
284 by rmoretti
Wed, 2018-11-21 14:01

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