You are here

Rosetta 3 - General

Pages

Topic / Topic starter Repliessort descending Views Last post
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,003 by admin
Fri, 2015-09-04 16:17
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
1,845 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
273 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
0
237 by Swillard
Sun, 2018-07-01 13:07
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
840 by tevang
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
956 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
848 by vasek
Mon, 2014-04-21 06:48
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
773 by exchhattu
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
231 by obdulia
Wed, 2018-04-18 00:45
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
0
66 by weifulei
Sun, 2019-05-05 19:56
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,520 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
403 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
789 by albumns
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,073 by joseph
Mon, 2014-04-21 06:47
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
178 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,326 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
1,571 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
2,193 by xujc
Mon, 2014-04-21 06:47
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,044 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
702 by DanielK
Mon, 2014-04-21 06:47
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
206 by bazzoli
Wed, 2018-10-10 01:59
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
700 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
0
102 by asbelx
Sat, 2019-04-13 01:13
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
290 by jferrie
Mon, 2018-04-23 15:25
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
0
77 by BioPython
Sun, 2019-05-12 20:07
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
501 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
639 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
733 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
765 by myang
Mon, 2014-04-21 06:47
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
184 by yangshen12
Fri, 2018-10-26 12:34
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
0
70 by weifulei
Sun, 2019-05-05 19:56
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
218 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
750 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
837 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
0
791 by gobli033
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
771 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
867 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
0
262 by bio_james
Wed, 2017-12-13 09:13
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
708 by albumns
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
740 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
720 by tricia
Mon, 2014-04-21 06:47
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
0
789 by sdh
Mon, 2014-04-21 06:47
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
230 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
248 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
201 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
0
164 by Anpu
Thu, 2018-09-27 23:36
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
756 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
0
886 by w107kdk
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
861 by sumukh21
Mon, 2014-04-21 06:47
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
214 by ac.research
Mon, 2018-05-14 08:27
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
124 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
744 by justin
Mon, 2014-04-21 06:47
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
0
287 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
1,519 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
1,095 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
189 by a.book
Wed, 2018-10-03 15:56
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
805 by abhishek
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
455 by Jhreed
Fri, 2016-07-08 13:44
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
803 by justin
Mon, 2014-04-21 06:47
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
0
221 by pmit
Thu, 2018-05-03 01:48
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
0
30 by hdelrisco
Wed, 2019-06-19 15:43
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
768 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
435 by fmerino
Mon, 2017-10-16 04:02
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
196 by David
Tue, 2019-01-22 12:23
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,090 by Trentage
Mon, 2014-04-21 06:47
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
287 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,079 by jurkm
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
760 by IgaK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
893 by DanielK
Mon, 2014-04-21 06:47
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
0
228 by dasdevashishdas
Fri, 2018-10-12 00:55
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
0
80 by weifulei
Mon, 2019-05-20 21:18
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
114 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
656 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
289 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
200 by ela
Fri, 2018-08-31 02:53
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
979 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,092 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
1,351 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,432 by rmoretti
Fri, 2014-05-23 08:09
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,120 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
715 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
490 by rmoretti
Tue, 2017-03-28 09:02
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
108 by vmulligan
Mon, 2019-04-08 14:49
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
924 by smlewis
Mon, 2014-04-21 06:47
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,166 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,385 by rmoretti
Thu, 2015-12-03 15:14
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,038 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
1,573 by Anonymous
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
950 by yarovoy
Wed, 2016-03-30 12:37
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
2,927 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
1,917 by franfdez
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,633 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
399 by rmoretti
Mon, 2018-02-05 15:44
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,037 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
2,616 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
668 by rmoretti
Tue, 2016-07-12 08:43
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,034 by smlewis
Fri, 2014-11-07 12:03
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
937 by anusmita_sahoo
Mon, 2014-04-21 06:47

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General