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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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7,881 by admin
Fri, 2015-09-04 16:17
Normal topic Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help)
by seamoon » Wed, 2023-05-24 07:46
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326 by seamoon
Wed, 2023-05-24 07:46
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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1,606 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
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1,016 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,737 by w107kdk
Mon, 2014-04-21 06:47
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
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1,097 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
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381 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
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1,127 by ac.research
Mon, 2018-05-14 08:27
Normal topic Rosetta remodelling - how to change the added residue type instead of just VAL
by xuezhi » Wed, 2023-02-15 14:00
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388 by xuezhi
Wed, 2023-02-15 14:00
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
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2,477 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
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795 by cryosky
Sun, 2021-09-26 13:24
Normal topic Interface scores comparison
by NingNing » Tue, 2022-08-09 17:36
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478 by NingNing
Tue, 2022-08-09 17:36
Normal topic Error when running AqueousPoreFinder protocol
by mluengo » Mon, 2023-12-11 02:55
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230 by mluengo
Mon, 2023-12-11 03:13
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
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1,054 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Loop modeling
by Robertofg » Tue, 2022-11-22 00:34
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556 by Robertofg
Tue, 2022-11-22 00:34
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
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1,285 by Jhreed
Fri, 2016-07-08 13:44
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,861 by joseph
Mon, 2014-04-21 06:47
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,545 by justin
Mon, 2014-04-21 06:47
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
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893 by matteoferla
Wed, 2020-07-22 03:08
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
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1,275 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,986 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
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660 by lsong2
Thu, 2021-11-18 10:31
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
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678 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
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1,019 by pmit
Thu, 2018-05-03 01:48
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
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909 by nferruz
Fri, 2020-08-28 06:05
Normal topic GeneralizedKIC side chain closure.
by almeida85 » Mon, 2022-09-19 06:13
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563 by almeida85
Mon, 2022-09-19 07:22
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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1,637 by abhishek
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
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890 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Questions about gen_apo_grids
by JasonIsaac » Sat, 2023-06-17 00:20
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305 by JasonIsaac
Sat, 2023-06-17 00:20
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,547 by justin
Mon, 2014-04-21 06:47
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
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1,395 by fmerino
Mon, 2017-10-16 04:02
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
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1,127 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
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405 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
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1,480 by sayan500
Tue, 2019-07-30 22:20
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
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1,596 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
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954 by ate
Sat, 2021-05-01 02:52
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
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463 by mrosam
Mon, 2022-08-08 01:37
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
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1,843 by jurkm
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
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515 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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1,508 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
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1,041 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
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733 by ate
Wed, 2021-06-16 19:19
Normal topic Cartesian_ddG mutfile error
by paulbo » Mon, 2024-02-05 01:25
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320 by paulbo
Mon, 2024-02-05 01:25
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
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1,703 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
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1,005 by matteoferla
Sun, 2020-03-22 05:29
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
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1,030 by rohi
Thu, 2020-10-15 10:28
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
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557 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
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1,916 by Trentage
Mon, 2014-04-21 06:47
Normal topic Hamiltonian Exchange
by JSK » Mon, 2024-03-18 12:44
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73 by JSK
Tue, 2024-03-19 09:21
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
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941 by YuFei
Wed, 2020-04-22 17:27
Normal topic Intel MPI: early exit due to job process stopped.
by jackzzs » Mon, 2023-05-15 02:57
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1,157 by jackzzs
Mon, 2023-05-15 03:17
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
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1,544 by IgaK
Mon, 2014-04-21 06:47
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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1,170 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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796 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
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505 by biotech
Wed, 2022-10-26 11:17
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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924 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
by Jane_002 » Tue, 2023-08-08 21:07
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522 by Jane_002
Tue, 2023-08-08 21:07
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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1,764 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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1,145 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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1,200 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
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871 by rvandamme
Mon, 2021-02-01 13:39
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
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420 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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892 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
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852 by Corvin
Wed, 2021-05-19 07:54
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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1,703 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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1,603 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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872 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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504 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
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206 by Eden
Sat, 2023-11-18 02:39
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,779 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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1,325 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,440 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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898 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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790 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
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509 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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1,086 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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1,094 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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518 by ialvy
Tue, 2022-08-30 00:00
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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1,044 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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498 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,565 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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1,310 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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1,186 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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484 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
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369 by almeida85
Thu, 2023-05-25 06:18
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
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1,563 by tevang
Mon, 2014-04-21 06:47
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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651 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
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1,504 by exchhattu
Mon, 2014-04-21 06:47
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
997 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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510 by He Xiao
Mon, 2022-11-07 04:10
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,995 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
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886 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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484 by mb0261
Thu, 2022-06-30 10:48
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
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501 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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762 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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4,206 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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2,073 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,541 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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716 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
558 by csvajda
Sat, 2022-08-13 08:08

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