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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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7,205 by admin
Fri, 2015-09-04 16:17
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
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533 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
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542 by rohi
Mon, 2021-03-15 06:31
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
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1,297 by myang
Mon, 2014-04-21 06:47
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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272 by tisozaki
Tue, 2021-12-14 17:16
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
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1,246 by albumns
Mon, 2014-04-21 06:47
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
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727 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
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563 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
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579 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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784 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
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647 by Kazu
Wed, 2020-05-20 11:58
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
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1,511 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
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619 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
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1,232 by ctaylor
Mon, 2014-04-21 06:47
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
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965 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
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597 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
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387 by CameronJA
Mon, 2021-06-14 16:12
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,335 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
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796 by bio_james
Wed, 2017-12-13 09:13
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
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777 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
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127 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
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1,297 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
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1,340 by exchhattu
Mon, 2014-04-21 06:47
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
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745 by BioPython
Sun, 2019-05-12 20:07
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
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494 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
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257 by tlopes
Wed, 2022-01-05 18:19
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
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779 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
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531 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
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101 by guowuchen
Thu, 2022-06-23 04:43
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
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739 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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1,287 by sdh
Mon, 2014-04-21 06:47
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
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900 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
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821 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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1,184 by tricia
Mon, 2014-04-21 06:47
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
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4 by yliang20
Mon, 2022-08-08 16:59
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
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719 by Anpu
Thu, 2018-09-27 23:36
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
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119 by Hyun
Tue, 2022-03-29 19:53
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
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758 by yangshen12
Fri, 2018-10-26 12:34
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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1,297 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
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659 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,418 by w107kdk
Mon, 2014-04-21 06:47
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
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801 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
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791 by ac.research
Mon, 2018-05-14 08:27
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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1,249 by gobli033
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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1,252 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
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64 by mb0261
Wed, 2022-07-27 07:00
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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1,155 by albumns
Mon, 2014-04-21 06:47
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
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2,100 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
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421 by cryosky
Sun, 2021-09-26 13:24
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
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968 by Jhreed
Fri, 2016-07-08 13:44
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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1,210 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
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569 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
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145 by amcallister
Fri, 2022-04-22 11:26
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,654 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
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305 by lsong2
Thu, 2021-11-18 10:31
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
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569 by matteoferla
Wed, 2020-07-22 03:08
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
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739 by matteoferla
Fri, 2020-04-10 02:40
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,268 by justin
Mon, 2014-04-21 06:47
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
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1,065 by fmerino
Mon, 2017-10-16 04:02
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
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266 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
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719 by pmit
Thu, 2018-05-03 01:48
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
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609 by nferruz
Fri, 2020-08-28 06:05
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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1,317 by abhishek
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
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559 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
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1,145 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
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596 by ate
Sat, 2021-05-01 02:52
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
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797 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
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1,070 by sayan500
Tue, 2019-07-30 22:20
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
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19 by mrosam
Mon, 2022-08-08 01:37
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
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1,531 by jurkm
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
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134 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
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598 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
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392 by ate
Wed, 2021-06-16 19:19
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
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1,376 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
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664 by matteoferla
Sun, 2020-03-22 05:29
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
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653 by rohi
Thu, 2020-10-15 10:28
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
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1,238 by IgaK
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,579 by joseph
Mon, 2014-04-21 06:47
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,225 by justin
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
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605 by YuFei
Wed, 2020-04-22 17:27
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
628 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
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935 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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718 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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464 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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558 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
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498 by Corvin
Wed, 2021-05-19 07:54
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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1,387 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
812 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
821 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
498 by rvandamme
Mon, 2021-02-01 13:39
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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1,409 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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1,319 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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553 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,459 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
915 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,090 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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589 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
157 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
783 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
743 by matteoferla
Tue, 2020-07-14 01:51

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