You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:16 |
0 |
7,881 |
by admin Fri, 2015-09-04 16:17 |
|
Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
0 |
326 |
by seamoon Wed, 2023-05-24 07:46 |
|
(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
0 |
1,606 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
|
Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
0 |
1,016 |
by zahra_AZ Mon, 2020-11-09 02:23 |
|
3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
0 |
1,737 |
by w107kdk Mon, 2014-04-21 06:47 |
|
[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
1,097 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
|
Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
0 |
381 |
by Brian Wiley Sat, 2023-02-04 23:43 |
|
RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
1,127 |
by ac.research Mon, 2018-05-14 08:27 |
|
Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
0 |
388 |
by xuezhi Wed, 2023-02-15 14:00 |
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,477 |
by Anonymous Mon, 2014-04-21 06:47 |
|
Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
0 |
795 |
by cryosky Sun, 2021-09-26 13:24 |
|
Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
0 |
478 |
by NingNing Tue, 2022-08-09 17:36 |
|
Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
0 |
230 |
by mluengo Mon, 2023-12-11 03:13 |
|
Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
0 |
1,054 |
by matteoferla Fri, 2021-02-26 07:12 |
|
Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
0 |
556 |
by Robertofg Tue, 2022-11-22 00:34 |
|
Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
1,285 |
by Jhreed Fri, 2016-07-08 13:44 |
|
error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,861 |
by joseph Mon, 2014-04-21 06:47 |
|
Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,545 |
by justin Mon, 2014-04-21 06:47 |
|
I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
0 |
893 |
by matteoferla Wed, 2020-07-22 03:08 |
|
Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
0 |
1,275 |
by matteoferla Fri, 2020-04-10 02:40 |
|
Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
0 |
1,986 |
by wtscrystal Mon, 2014-04-21 06:47 |
|
Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
0 |
660 |
by lsong2 Thu, 2021-11-18 10:31 |
|
mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
0 |
678 |
by hanzhiz Thu, 2021-12-16 09:32 |
|
restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
1,019 |
by pmit Thu, 2018-05-03 01:48 |
|
Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
909 |
by nferruz Fri, 2020-08-28 06:05 |
|
GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
0 |
563 |
by almeida85 Mon, 2022-09-19 07:22 |
|
Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
0 |
1,637 |
by abhishek Mon, 2014-04-21 06:47 |
|
BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
0 |
890 |
by pedro.guillem Wed, 2020-06-24 04:42 |
|
Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
0 |
305 |
by JasonIsaac Sat, 2023-06-17 00:20 |
|
compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
0 |
1,547 |
by justin Mon, 2014-04-21 06:47 |
|
Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
0 |
1,395 |
by fmerino Mon, 2017-10-16 04:02 |
|
keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
0 |
1,127 |
by ziqi1234 Fri, 2017-11-10 04:04 |
|
Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
0 |
405 |
by Brian Wiley Sun, 2023-02-12 20:46 |
|
Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,480 |
by sayan500 Tue, 2019-07-30 22:20 |
|
make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,596 |
by rlwoltz Fri, 2019-02-01 10:31 |
|
Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
954 |
by ate Sat, 2021-05-01 02:52 |
|
Temperature by mrosam » Mon, 2022-08-08 01:37 |
0 |
463 |
by mrosam Mon, 2022-08-08 01:37 |
|
Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,843 |
by jurkm Mon, 2014-04-21 06:47 |
|
Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
0 |
515 |
by katherinemccoy Tue, 2022-03-29 14:26 |
|
shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,508 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
1,041 |
by LTJ Mon, 2020-07-06 14:13 |
|
Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
0 |
733 |
by ate Wed, 2021-06-16 19:19 |
|
Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
0 |
320 |
by paulbo Mon, 2024-02-05 01:25 |
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,703 |
by DanielK Mon, 2014-04-21 06:47 |
|
SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
0 |
1,005 |
by matteoferla Sun, 2020-03-22 05:29 |
|
using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
0 |
1,030 |
by rohi Thu, 2020-10-15 10:28 |
|
What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
0 |
557 |
by JasonIsaac Mon, 2022-12-05 18:57 |
|
Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
0 |
1,916 |
by Trentage Mon, 2014-04-21 06:47 |
|
Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
0 |
73 |
by JSK Tue, 2024-03-19 09:21 |
|
ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
0 |
941 |
by YuFei Wed, 2020-04-22 17:27 |
|
Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
0 |
1,157 |
by jackzzs Mon, 2023-05-15 03:17 |
|
Webinar? by IgaK » Thu, 2009-11-19 03:26 |
0 |
1,544 |
by IgaK Mon, 2014-04-21 06:47 |
|
Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
1,170 |
by fgomes Fri, 2019-11-22 19:12 |
|
How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
0 |
796 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
|
Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
0 |
505 |
by biotech Wed, 2022-10-26 11:17 |
|
Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
924 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
|
[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
0 |
522 |
by Jane_002 Tue, 2023-08-08 21:07 |
|
Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,764 |
by Karol Mon, 2016-08-29 05:27 |
|
Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
0 |
1,145 |
by ziqi1234 Tue, 2017-11-21 05:55 |
|
incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
1,200 |
by ela Fri, 2018-08-31 02:53 |
|
rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
0 |
871 |
by rvandamme Mon, 2021-02-01 13:39 |
|
How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
0 |
420 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
|
Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
892 |
by karolcia1010 Wed, 2020-06-17 11:19 |
|
Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
0 |
852 |
by Corvin Wed, 2021-05-19 07:54 |
|
maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,703 |
by abdullah Mon, 2014-04-21 06:47 |
|
Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,603 |
by vasek Mon, 2014-04-21 06:48 |
|
Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
872 |
by adityapadhi Wed, 2020-06-24 01:29 |
|
Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
0 |
504 |
by liuwenxi Tue, 2022-08-09 08:33 |
|
FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
0 |
206 |
by Eden Sat, 2023-11-18 02:39 |
|
General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
0 |
2,779 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
1,325 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
|
Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
0 |
1,440 |
by a.book Wed, 2018-10-03 15:56 |
|
Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
0 |
898 |
by chrisHKL Mon, 2020-02-17 09:12 |
|
InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
0 |
790 |
by asaf.farhi Wed, 2022-04-13 15:05 |
|
N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
0 |
509 |
by SebastianBB Mon, 2022-11-21 08:33 |
|
FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
1,086 |
by obdulia Wed, 2018-04-18 00:45 |
|
"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
1,094 |
by matteoferla Tue, 2020-07-14 01:51 |
|
Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
0 |
518 |
by ialvy Tue, 2022-08-30 00:00 |
|
what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
0 |
1,044 |
by jmaly Wed, 2020-09-02 16:16 |
|
Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
0 |
498 |
by cttm4a1 Wed, 2022-09-14 23:40 |
|
Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,565 |
by coxford Mon, 2014-04-21 06:47 |
|
Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,310 |
by SenyorDrew Tue, 2016-12-13 14:29 |
|
Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
1,186 |
by matteoferla Thu, 2021-04-01 04:06 |
|
RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
0 |
484 |
by Zjq1998 Wed, 2022-06-15 23:54 |
|
Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
0 |
369 |
by almeida85 Thu, 2023-05-25 06:18 |
|
running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,563 |
by tevang Mon, 2014-04-21 06:47 |
|
SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
0 |
651 |
by hanzhiz Thu, 2021-12-16 09:18 |
|
pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,504 |
by exchhattu Mon, 2014-04-21 06:47 |
|
RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
0 |
997 |
by haom Wed, 2020-09-09 09:19 |
|
Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
0 |
510 |
by He Xiao Mon, 2022-11-07 04:10 |
|
RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
1,995 |
by David Tue, 2019-01-22 12:23 |
|
Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
886 |
by ate Sat, 2021-05-01 02:22 |
|
How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
0 |
484 |
by mb0261 Thu, 2022-06-30 10:48 |
|
Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
0 |
501 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
|
Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
0 |
762 |
by dkesar Fri, 2021-06-04 19:09 |
|
Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,206 |
by xujc Mon, 2014-04-21 06:47 |
|
Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,073 |
by burkheadlab Mon, 2014-04-21 06:47 |
|
abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,541 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
|
Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
716 |
by Antonia Wed, 2021-06-16 12:30 |
|
Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
558 |
by csvajda Sat, 2022-08-13 08:08 |
Log in to post new content in the forum.