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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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5,064 by admin
Fri, 2015-09-04 16:17
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
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222 by yangshen12
Fri, 2018-10-26 12:34
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
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249 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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787 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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921 by w107kdk
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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895 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
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295 by bio_james
Wed, 2017-12-13 09:13
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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779 by justin
Mon, 2014-04-21 06:47
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,129 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
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270 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
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300 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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831 by justin
Mon, 2014-04-21 06:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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832 by abhishek
Mon, 2014-04-21 06:47
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
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289 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
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80 by sayan500
Tue, 2019-07-30 22:20
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
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191 by Anpu
Thu, 2018-09-27 23:36
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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793 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
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1,120 by Trentage
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
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888 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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158 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
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787 by IgaK
Mon, 2014-04-21 06:47
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
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314 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
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252 by ac.research
Mon, 2018-05-14 08:27
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
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1,554 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
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489 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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225 by a.book
Wed, 2018-10-03 15:56
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
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497 by fmerino
Mon, 2017-10-16 04:02
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
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249 by pmit
Thu, 2018-05-03 01:48
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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281 by David
Tue, 2019-01-22 12:23
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
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874 by tevang
Mon, 2014-04-21 06:47
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
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321 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
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801 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
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1,106 by jurkm
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
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920 by DanielK
Mon, 2014-04-21 06:47
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
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279 by dasdevashishdas
Fri, 2018-10-12 00:55
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
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818 by albumns
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
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1,602 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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69 by yinasun
Fri, 2019-07-26 02:17
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
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165 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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719 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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319 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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236 by ela
Fri, 2018-08-31 02:53
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
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1,075 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
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276 by Swillard
Sun, 2018-07-01 13:07
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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981 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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877 by vasek
Mon, 2014-04-21 06:48
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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1,945 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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307 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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261 by obdulia
Wed, 2018-04-18 00:45
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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1,561 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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439 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,102 by joseph
Mon, 2014-04-21 06:47
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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224 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
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794 by myang
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,366 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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2,266 by xujc
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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731 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
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779 by ctaylor
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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732 by DanielK
Mon, 2014-04-21 06:47
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
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240 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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336 by jferrie
Mon, 2018-04-23 15:25
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
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145 by BioPython
Sun, 2019-05-12 20:07
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
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866 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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687 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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818 by gobli033
Mon, 2014-04-21 06:47
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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532 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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763 by lanselibai
Sun, 2014-11-16 10:44
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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738 by albumns
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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799 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
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65 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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750 by tricia
Mon, 2014-04-21 06:47
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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824 by sdh
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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771 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
58 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
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938 by smlewis
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
1,323 by rmoretti
Mon, 2014-06-16 08:23
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
1,846 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
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1,276 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
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1,352 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
1,203 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
509 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
139 by rmoretti
Tue, 2019-07-09 15:48
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,122 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,003 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,189 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
848 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
1,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
430 by rmoretti
Wed, 2018-01-31 14:57
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,260 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
649 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
845 by smlewis
Tue, 2015-12-22 08:31
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,184 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,000 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,080 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
633 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
2,213 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,027 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
687 by smlewis
Mon, 2016-08-22 10:39
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
924 by smlewis
Mon, 2014-04-21 06:47
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
976 by smlewis
Mon, 2014-04-21 06:47

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