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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,079 by admin
Fri, 2015-09-04 16:17
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
26,738 by bharat_46010
Mon, 2014-04-21 06:47
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
31,401 by rmoretti
Fri, 2015-07-03 13:29
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24
35
16,547 by rmoretti
Mon, 2014-04-21 06:47
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
15,639 by jyy
Wed, 2019-02-20 00:30
Hot topic RNA Denovo RMSD data
by eremma » Thu, 2012-08-02 01:40
31
12,203 by eremma
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
14,182 by smlewis
Mon, 2014-04-21 06:47
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57
28
10,107 by Marsia
Mon, 2014-04-21 06:47
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
13,805 by omirus
Mon, 2014-04-21 06:48
Hot topic Fix back bone design fixbb
by Lindsay » Tue, 2012-03-06 12:30
26
9,822 by Anonymous
Mon, 2014-04-21 06:47
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10
26
11,171 by rmoretti
Mon, 2014-04-21 06:47
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39
25
12,819 by Gaurav_kumar
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
8,160 by smlewis
Tue, 2016-06-28 09:05
Hot topic how to make benchmark?
by albumns » Wed, 2012-04-04 05:23
23
13,999 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39
23
9,238 by FrankVerdin86
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
8,436 by Anonymous
Mon, 2014-04-21 06:47
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
9,697 by rmoretti
Fri, 2015-12-18 14:26
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
12,846 by rmoretti
Wed, 2015-02-18 09:23
Hot topic Is it possible to do alanine scanning in Rosetta 3.2.1.?
by monos_morpheus » Tue, 2011-04-12 02:36
21
10,960 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
11,567 by rmoretti
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
8,053 by smlewis
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
8,307 by pledor
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
7,536 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
8,476 by aaj
Fri, 2016-04-22 15:20
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
9,989 by jadolfbr
Wed, 2014-05-14 08:51
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36
17
6,794 by albumns
Mon, 2014-04-21 06:47
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
6,338 by smlewis
Tue, 2016-05-17 08:06
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
6,405 by Basantab
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
7,118 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24
15
6,664 by saxen
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
7,798 by tevang
Mon, 2014-04-21 06:47
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
11,429 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
7,593 by phanvy
Wed, 2014-06-18 07:50
Normal topic How to relax only one domain of a protein and keep the rest of them fixed
by tevang » Sun, 2011-04-10 03:16
14
6,888 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
5,084 by Anonymous
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
5,659 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
6,335 by sabine
Mon, 2014-04-21 06:47
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
4,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
5,436 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
3,913 by ablakely7
Wed, 2019-09-11 15:33
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
4,917 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
8,621 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
13
8,294 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
2,168 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
7,450 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
3,746 by smlewis
Thu, 2016-12-22 13:11
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
6,947 by Apiwat
Tue, 2014-03-11 09:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
6,509 by rmoretti
Mon, 2014-10-06 16:50
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
5,616 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
6,211 by rmoretti
Fri, 2015-04-24 12:15
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
2,825 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
2,512 by smlewis
Tue, 2017-08-29 08:56
Normal topic How to obtain alignment file for comparative modeling under Rosetta 3.1?
by lennylv » Tue, 2010-05-25 01:29
11
10,626 by sabine
Mon, 2014-04-21 06:47
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
4,741 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
11
7,434 by rmoretti
Mon, 2018-01-15 15:37
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
6,757 by smlewis
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
6,381 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
4,967 by weitzner
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
5,898 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
5,122 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
4,389 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
6,718 by Lindsay
Mon, 2014-04-21 06:48
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
1,193 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
4,399 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
6,092 by jurkm
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
3,661 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
5,639 by jurkm
Mon, 2014-04-21 06:47
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
7,502 by lanselibai
Tue, 2015-02-10 14:03
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
1,482 by smlewis
Tue, 2018-06-19 09:28
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
4,283 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
4,660 by rmoretti
Thu, 2017-02-02 08:32
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
3,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
4,968 by brspurri
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
4,653 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
5,377 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
10
5,103 by nawsad
Tue, 2014-09-23 21:38
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
6,020 by rmoretti
Thu, 2015-04-30 16:25
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
5,626 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
5,769 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
1,429 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
4,580 by jamsmad
Mon, 2014-04-21 06:47
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
4,080 by rmoretti
Wed, 2014-09-24 09:57
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
4,828 by wangyr
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
2,547 by ac.research
Mon, 2018-05-14 10:20
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
4,498 by attesor
Fri, 2014-10-31 04:49
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
5,353 by lanselibai
Wed, 2014-10-15 01:41
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
9
5,696 by tianbu
Mon, 2014-02-17 03:36
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
3,756 by albumns
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
4,457 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
9
4,552 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
4,391 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
9
4,725 by Lindsay
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
2,851 by jtmacd
Mon, 2014-04-21 06:47
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
2,437 by smlewis
Sun, 2017-01-15 18:14
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
3,679 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
4,005 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
3,483 by jrcf
Wed, 2016-03-23 12:16
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
8,900 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
3,516 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
4,052 by rmoretti
Mon, 2014-11-03 16:30

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