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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,205 by admin
Fri, 2015-09-04 16:17
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,382 by ylwang
Tue, 2019-10-08 18:34
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,297 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,094 by attesor
Thu, 2015-10-22 03:42
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,404 by phanvy
Wed, 2014-10-15 21:41
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
157 by asaf.farhi
Wed, 2022-04-13 15:05
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
12,498 by smlewis
Tue, 2016-05-17 08:06
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,557 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
2,959 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,824 by rmoretti
Fri, 2016-10-14 15:46
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
2,757 by Awagner7
Tue, 2020-04-28 10:51
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
3,907 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
1,598 by smlewis
Thu, 2016-08-11 13:16
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
2,520 by petrikigor
Mon, 2014-04-21 06:47
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
743 by matteoferla
Tue, 2020-07-14 01:51
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
2,689 by fred
Fri, 2014-04-04 11:34
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
4,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
8,801 by weitzner
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,737 by vsjasion
Mon, 2014-04-21 06:47
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
231 by e3lm
Fri, 2022-05-06 16:10
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
3,118 by tsjain
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,989 by Karol
Thu, 2016-05-12 07:58
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
0
1,418 by w107kdk
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,177 by bjharris
Wed, 2020-09-09 20:04
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
4,520 by albumns
Mon, 2014-04-21 06:47
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
5,853 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,849 by rmoretti
Tue, 2014-06-03 11:45
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,297 by myang
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,818 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,140 by rmoretti
Wed, 2018-11-21 14:01
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
14
13,258 by jseco
Mon, 2021-03-08 03:46
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,166 by smlewis
Tue, 2018-08-07 16:59
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
529 by pci112
Mon, 2021-04-12 08:12
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,317 by abhishek
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
1,954 by maruhuang
Thu, 2019-09-26 18:55
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
10,489 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
3,705 by w107kdk
Mon, 2014-04-21 06:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
6,845 by albumns
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
4,854 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
286 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
1,813 by smlewis
Wed, 2018-04-04 10:42
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,937 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
2,396 by westleys
Mon, 2014-04-21 06:47
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
2,558 by ac.research
Sun, 2017-09-24 11:25
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,037 by danpf
Tue, 2019-09-03 10:39
Normal topic AbinitioRelax under different directories without -constant_seed -jran flag
by xpzhang » Wed, 2010-09-15 14:56
6
6,360 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40
7
10,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,630 by jtmacd
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
7,763 by jamsmad
Mon, 2014-04-21 06:47
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
1,376 by nleroy
Fri, 2019-11-08 12:44
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
4,397 by biofisikx
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,224 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
5,414 by ssrb
Tue, 2015-09-22 08:35
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
20,232 by rmoretti
Wed, 2015-02-18 09:23
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,661 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
7
8,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,995 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,779 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
7,667 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,432 by rmoretti
Sat, 2014-05-17 14:10
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,185 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
1,295 by rmoretti
Thu, 2021-06-24 12:23
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,393 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
1,954 by vmulligan
Thu, 2017-04-27 16:41
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
1,241 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,073 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,306 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
791 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,940 by smlewis
Mon, 2014-04-21 06:47
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,307 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,919 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,345 by smlewis
Tue, 2018-06-19 10:31
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
3,843 by rmoretti
Mon, 2014-04-21 06:47
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
1,053 by rohi
Tue, 2020-10-13 09:15
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
2,739 by smlewis
Mon, 2014-04-21 06:47
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,012 by smlewis
Mon, 2014-04-21 06:47
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,331 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
3,166 by cannond
Wed, 2017-03-01 08:05
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
4,662 by sunhwan
Mon, 2017-02-27 11:02
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,457 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
0
82 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
10,048 by rmoretti
Fri, 2015-04-24 12:15
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
91 by matteoferla
Wed, 2022-07-20 10:33
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
875 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,386 by rmoretti
Mon, 2018-08-20 11:45
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,071 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,717 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,696 by rmoretti
Mon, 2014-04-21 06:48
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
7,038 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
2,006 by SergeyP
Thu, 2016-05-05 02:07
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,805 by jtmacd
Mon, 2014-04-21 06:47
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
2,936 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,178 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,210 by anusmita_sahoo
Mon, 2014-04-21 06:47

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