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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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by rmoretti Wed, 2019-09-18 10:49 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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by vmulligan Tue, 2019-09-17 13:08 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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by Rick_Baker Wed, 2019-09-11 15:35 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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by danpf Tue, 2019-09-03 10:39 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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by jadolfbr Thu, 2019-08-29 14:29 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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by karenjgonzalez Wed, 2019-07-31 12:35 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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by rmoretti Mon, 2019-08-26 15:00 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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by rmoretti Mon, 2019-07-08 08:05 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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by yinasun Fri, 2019-07-26 02:17 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
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by rmoretti Mon, 2019-08-26 15:01 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
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by matteoferla Wed, 2019-08-21 11:58 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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by sayan500 Tue, 2019-07-30 22:20 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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by rmoretti Mon, 2019-08-26 14:52 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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by vmulligan Fri, 2019-07-26 15:00 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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by matteoferla Thu, 2019-08-22 05:39 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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by rmoretti Tue, 2019-09-10 14:17 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
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by mao_x Thu, 2019-08-08 01:37 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
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by decrSTL Tue, 2019-08-27 10:24 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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by ac.research Sat, 2019-08-03 08:12 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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by smlewis Wed, 2019-05-29 13:21 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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by rmoretti Tue, 2019-07-09 15:59 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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by smlewis Fri, 2019-06-28 13:56 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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by rmoretti Tue, 2019-07-09 15:48 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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by BioPython Sun, 2019-05-12 20:07 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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by vmulligan Tue, 2019-03-26 11:23 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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by ahmadkhalifa Fri, 2018-12-28 00:28 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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by vmulligan Mon, 2019-04-08 14:49 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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by rmoretti Sat, 2019-03-30 12:10 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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by rlwoltz Mon, 2019-03-11 18:32 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
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by rmoretti Wed, 2019-04-03 10:03 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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by rmoretti Wed, 2019-04-03 09:31 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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by rmoretti Mon, 2019-08-26 14:11 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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by connyyu Thu, 2019-04-18 03:26 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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by ziheng@mit.edu Thu, 2019-04-25 14:31 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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by rmoretti Tue, 2019-07-09 12:31 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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by rmoretti Tue, 2019-07-09 15:57 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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by Anpu Thu, 2018-09-27 23:36 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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by jadolfbr Wed, 2019-06-12 20:17 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
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by jeliazkov Fri, 2019-05-03 07:00 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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by johnnytam100 Wed, 2019-05-15 18:45 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
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by AJVincelli Sun, 2018-11-25 11:09 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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by yangshen12 Fri, 2018-10-26 12:34 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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by zhoubin Fri, 2019-01-04 13:14 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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by a.book Wed, 2018-10-03 15:56 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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by vmulligan Tue, 2019-03-26 11:30 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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by yifeili1983 Mon, 2019-04-15 22:34 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
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by rmoretti Wed, 2019-04-03 09:58 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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by ela Fri, 2018-08-31 02:53 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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by bazzoli Wed, 2018-10-10 01:59 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
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by rmoretti Wed, 2018-11-21 14:01 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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by sujigeorge1979 Thu, 2019-06-27 01:30 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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by pmit Thu, 2018-05-03 01:48 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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by ahmadkhalifa Fri, 2018-05-04 07:50 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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by ac.research Mon, 2018-05-14 08:27 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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by rmoretti Mon, 2018-10-08 11:20 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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by obdulia Wed, 2018-04-18 00:45 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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by frankfurter1 Wed, 2018-05-09 04:40 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
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by jadolfbr Fri, 2018-11-09 09:17 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
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by Swillard Sun, 2018-07-01 13:07 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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by rmoretti Fri, 2019-03-29 14:43 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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by dasdevashishdas Fri, 2018-10-12 00:55 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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by David Tue, 2019-01-22 12:23 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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by rmoretti Fri, 2018-08-03 12:37 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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by rmoretti Wed, 2018-11-21 14:14 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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by ziqi1234 Thu, 2018-05-24 02:18 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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by bio_james Wed, 2017-12-13 09:13 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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by rlwoltz Fri, 2019-02-01 10:31 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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by rmoretti Wed, 2018-08-01 16:04 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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by ipetrik_ambry Wed, 2017-12-06 13:11 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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by dfcoelho Tue, 2018-10-16 08:35 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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by ipetrik_ambry Mon, 2017-10-30 17:03 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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by smlewis Thu, 2018-06-28 13:34 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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by ziqi1234 Tue, 2017-11-21 05:55 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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by ziqi1234 Fri, 2017-11-10 04:04 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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by jferrie Mon, 2018-04-23 15:25 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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by rmoretti Sat, 2019-03-30 12:12 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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by Jacky010 Tue, 2019-05-14 01:24 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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by smlewis Tue, 2018-08-07 16:59 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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by rmoretti Mon, 2018-02-12 09:39 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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by smlewis Tue, 2018-06-19 10:31 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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by jkleman Tue, 2018-07-31 13:19 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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by Ronghai Cheng Tue, 2018-11-13 21:56 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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by rmoretti Mon, 2018-03-19 09:08 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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by rmoretti Thu, 2018-06-28 14:22 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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by matteoferla Thu, 2018-09-13 06:21 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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382 |
by jadolfbr Tue, 2019-04-16 09:15 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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by rmoretti Fri, 2018-08-03 08:59 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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by rmoretti Thu, 2018-02-22 09:29 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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by ac.research Sat, 2017-11-18 06:54 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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by rmoretti Mon, 2018-08-20 11:51 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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by smlewis Mon, 2018-11-19 13:20 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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by orionshih Tue, 2018-05-01 21:16 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
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by rmoretti Wed, 2018-01-31 14:57 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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436 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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by SenyorDrew Tue, 2016-12-13 14:29 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
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by jkleman Sat, 2018-04-14 10:55 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
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447 |
by rmoretti Mon, 2018-01-15 14:35 |
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