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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,990 by admin
Fri, 2015-09-04 16:17
Normal topic FARFAR2 error: no edge found that contains seqpos!
by mandar » Tue, 2024-06-18 18:39
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9 by mandar
Tue, 2024-06-18 18:39
Normal topic Error with fragment picking
by gserci » Mon, 2024-06-17 17:37
0
40 by gserci
Mon, 2024-06-17 17:37
Normal topic Question about blueprint file generation
by ng98 » Fri, 2024-05-24 03:02
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83 by ng98
Fri, 2024-05-24 03:02
Normal topic Is it impossible to use the ddg_monomer function on a non-monomeric structure?
by Wexter300 » Sat, 2024-05-25 14:16
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102 by Wexter300
Sat, 2024-05-25 14:16
Normal topic energy_based_clustering and silentfile option
by weiw26 » Wed, 2024-06-05 16:28
1
104 by rmoretti
Thu, 2024-06-06 08:11
Normal topic Illegal attempt to score with non-identical atom set between pose and etable
by ng98 » Fri, 2024-06-07 03:22
1
107 by rmoretti
Tue, 2024-06-11 02:45
Normal topic Error about using BuildDeNovoBackboneMover
by ng98 » Wed, 2024-05-29 01:47
0
130 by ng98
Wed, 2024-05-29 01:47
Normal topic Error about rifdocking step 19 motifgraft mover
by ng98 » Wed, 2024-05-22 02:25
1
141 by rmoretti
Wed, 2024-05-22 08:07
Normal topic Canceling jobs - RosettaDock5.0
by katie » Tue, 2024-04-09 12:30
0
157 by katie
Tue, 2024-04-09 12:30
Normal topic Scripts and/or strategies for saturation mutagenesis simulations?
by drinker615 » Tue, 2024-04-16 18:43
0
190 by drinker615
Tue, 2024-04-16 18:43
Normal topic Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score
by mrosam » Fri, 2024-04-19 07:57
0
195 by mrosam
Fri, 2024-04-19 07:57
Normal topic How do I implement more CPU cores in the execution of FlexPepDock?
by ChoripanSalado » Thu, 2024-05-02 08:55
0
198 by ChoripanSalado
Thu, 2024-05-02 08:55
Normal topic Segmentation Fault
by ileanexis » Mon, 2024-03-11 08:53
0
203 by ileanexis
Mon, 2024-03-11 08:53
Normal topic Hamiltonian Exchange
by JSK » Mon, 2024-03-18 12:44
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222 by JSK
Tue, 2024-03-19 09:21
Normal topic clustering PDBs from docking
by jbujons » Wed, 2024-04-24 08:34
2
246 by jbujons
Wed, 2024-04-24 09:34
Normal topic JD3 FastRelax over MPI - crashes on relax completion/before writing output
by aduffy33 » Tue, 2024-03-12 12:51
0
249 by aduffy33
Tue, 2024-03-12 12:52
Normal topic Question about computer specifications requirement of RFdiffusion
by ng98 » Mon, 2024-05-06 02:18
1
287 by nannemdp
Mon, 2024-05-06 20:09
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
0
297 by Eden
Sat, 2023-11-18 02:39
Normal topic protein-protein docking
by LUOD » Thu, 2023-11-02 18:23
0
313 by LUOD
Thu, 2023-11-02 18:25
Normal topic Error when running AqueousPoreFinder protocol
by mluengo » Mon, 2023-12-11 02:55
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325 by mluengo
Mon, 2023-12-11 03:13
Normal topic Methodology Feedback with As(III) and Pb(II) Binding
by rnogy » Mon, 2023-11-06 17:05
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333 by rnogy
Mon, 2023-11-06 17:06
Normal topic [Question] How do the <FILTERS> confidence work?
by jrom » Wed, 2024-01-24 10:25
1
339 by rmoretti
Wed, 2024-01-24 11:55
Normal topic Filters saying atom type does not exist on residue
by mdm95 » Mon, 2024-03-04 15:13
1
345 by mdm95
Tue, 2024-03-05 14:05
Normal topic Rigidifying ligand
by Daniel_Levin » Sun, 2024-02-18 12:10
0
354 by Daniel_Levin
Sun, 2024-02-18 12:10
Normal topic Global Docking with output analysis RMS
by kwu030 » Fri, 2024-02-23 09:17
1
371 by rmoretti
Mon, 2024-02-26 08:24
Normal topic Error about rifdocking
by ng98 » Mon, 2024-01-08 16:21
1
395 by rmoretti
Tue, 2024-01-09 23:41
Normal topic Questions about gen_apo_grids
by JasonIsaac » Sat, 2023-06-17 00:20
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405 by JasonIsaac
Sat, 2023-06-17 00:20
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
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418 by mrosam
Thu, 2023-05-25 05:14
Normal topic Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help)
by seamoon » Wed, 2023-05-24 07:46
0
420 by seamoon
Wed, 2023-05-24 07:46
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
0
428 by chenna
Sun, 2023-04-23 23:52
Normal topic how to generate _prepro.rama file for a customized beta-amino acid residues?
by wwwmrzkwww » Sun, 2023-04-23 14:25
0
441 by wwwmrzkwww
Sun, 2023-04-23 14:25
Normal topic Cartesian_ddG mutfile error
by paulbo » Mon, 2024-02-05 01:25
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444 by paulbo
Mon, 2024-02-05 01:25
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
0
444 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic Any general way to generate .params file for beta and gamma NCAA?
by wwwmrzkwww » Wed, 2023-04-26 12:35
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452 by wwwmrzkwww
Wed, 2023-04-26 12:35
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
0
463 by almeida85
Thu, 2023-05-25 06:18
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
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473 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
0
491 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic Rosetta remodelling - how to change the added residue type instead of just VAL
by xuezhi » Wed, 2023-02-15 14:00
0
505 by xuezhi
Wed, 2023-02-15 14:00
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
513 by rmoretti
Wed, 2023-08-23 08:26
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
0
515 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic Issues with rosetta numbering and keeping ligand when relaxing molecule.
by Wexter300 » Sun, 2024-04-28 14:37
4
520 by Wexter300
Tue, 2024-05-07 10:16
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
0
530 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic JD3 w/ Silent file output crashing - Option filename not found
by aduffy33 » Mon, 2023-10-30 13:40
2
535 by aduffy33
Mon, 2023-10-30 15:35
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
540 by mrosam
Mon, 2022-08-08 01:37
Normal topic Interface scores comparison
by NingNing » Tue, 2022-08-09 17:36
0
542 by NingNing
Tue, 2022-08-09 17:36
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
545 by Hyun
Tue, 2022-03-29 19:53
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
549 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17
0
552 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
0
559 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Replacing a single residue in a structure
by Wexter300 » Sat, 2023-09-16 14:23
0
560 by Wexter300
Sat, 2023-09-16 14:23
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
561 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
565 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
0
573 by mb0261
Thu, 2022-06-30 10:48
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
573 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic Unable to download Rosetta
by Yair Tenorio » Mon, 2023-10-23 11:48
2
583 by Yair Tenorio
Mon, 2023-10-23 12:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
584 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
586 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Problem with relaxing a PDB around a chemically bound ligand
by drinker615 » Sat, 2024-04-06 16:04
5
590 by drinker615
Tue, 2024-04-16 19:06
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
0
591 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
595 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
0
599 by ialvy
Tue, 2022-08-30 00:00
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
601 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
601 by Karthik
Wed, 2022-07-13 23:45
Normal topic FARFAR2 Error With Secondary Structure File
by bdh81 » Thu, 2023-11-02 09:01
2
606 by bdh81
Sun, 2023-11-05 16:04
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
0
606 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
607 by biotech
Wed, 2022-10-26 11:17
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
609 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
610 by Sergey
Thu, 2023-04-27 12:03
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
632 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
by Jane_002 » Tue, 2023-08-08 21:07
0
634 by Jane_002
Tue, 2023-08-08 21:07
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
635 by almeida85
Thu, 2022-11-17 01:04
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
636 by csvajda
Sat, 2022-08-13 08:08
Normal topic Prepacking crashing using metalloprotein
by mb0261 » Tue, 2022-12-06 10:16
0
643 by mb0261
Tue, 2022-12-06 10:16
Normal topic GeneralizedKIC side chain closure.
by almeida85 » Mon, 2022-09-19 06:13
0
646 by almeida85
Mon, 2022-09-19 07:22
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
649 by ajasja
Wed, 2023-04-05 00:20
Normal topic Loop modeling
by Robertofg » Tue, 2022-11-22 00:34
0
652 by Robertofg
Tue, 2022-11-22 00:34
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
0
655 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic Error when using published constraints file
by Delfosse57 » Thu, 2023-08-17 11:22
2
672 by ikalvet
Mon, 2023-08-21 05:52
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
0
680 by tlopes
Wed, 2022-01-05 18:19
Normal topic Docking antibody to membrane protein
by Yegor_Ko » Thu, 2023-10-12 07:37
2
682 by Yegor_Ko
Fri, 2023-10-20 01:35
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
0
695 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
698 by rmoretti
Mon, 2023-02-06 14:35
Normal topic different relaxed energy scores for one same protein structure
by ivareve125 » Sun, 2023-07-16 17:54
2
703 by ivareve125
Mon, 2023-07-17 17:37
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
0
704 by mgupta
Fri, 2022-12-09 01:03
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
712 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
718 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
720 by lsong2
Thu, 2021-11-18 10:31
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
0
734 by Wenithor
Sat, 2021-10-09 07:23
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
745 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
752 by rmoretti
Fri, 2023-02-24 13:58
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
756 by JW_24
Tue, 2023-01-24 04:55
Normal topic setting timeout option in MPI run
by syntekabio2019 » Mon, 2024-02-26 01:09
5
770 by rmoretti
Wed, 2024-02-28 09:20
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
771 by guowuchen
Thu, 2022-06-23 04:43
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
773 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
776 by Antonia
Wed, 2021-06-16 12:30
Normal topic ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr
by alove1 » Sat, 2023-10-28 17:19
3
778 by alove1
Mon, 2023-10-30 13:18
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
778 by rmoretti
Wed, 2022-09-07 09:19
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
779 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
791 by ate
Wed, 2021-06-16 19:19

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