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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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by rohi Fri, 2020-10-30 11:33 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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by rmoretti Mon, 2020-10-26 19:52 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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by wentlewi Sat, 2020-10-24 10:12 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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by rohi Thu, 2020-10-15 10:28 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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by rmoretti Mon, 2020-10-19 07:23 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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by rmoretti Tue, 2020-10-13 11:40 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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by avsrivatsa Mon, 2020-10-19 18:16 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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by michelleqyh Fri, 2020-08-21 09:00 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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by pedro.guillem Thu, 2020-07-23 03:45 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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125 |
by matteoferla Wed, 2020-07-22 03:08 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
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by rohi Tue, 2020-10-13 09:15 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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128 |
by haom Wed, 2020-09-09 09:19 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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by karolcia1010 Wed, 2020-06-17 11:19 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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by LTJ Mon, 2020-07-06 14:13 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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by matteoferla Tue, 2020-07-14 01:51 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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by haom Tue, 2020-09-01 18:50 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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by jeanramos Mon, 2020-07-13 00:56 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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148 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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by kalabharath Mon, 2020-06-29 06:59 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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by adityapadhi Wed, 2020-06-24 01:29 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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by xiaoyanzi Thu, 2020-06-18 00:36 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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by hajar Wed, 2020-06-10 11:17 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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by nferruz Fri, 2020-08-28 06:05 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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by matteoferla Fri, 2020-07-24 03:06 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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by jmaly Wed, 2020-09-02 16:16 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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by Osmany Guirola Mon, 2020-05-11 04:52 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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by pedro.guillem Thu, 2020-05-14 04:22 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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by JW_24 Wed, 2020-09-23 01:27 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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by pedro.guillem Wed, 2020-06-24 04:42 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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by windmill Thu, 2020-06-18 21:32 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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by matteoferla Fri, 2020-04-10 02:40 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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by Kazu Wed, 2020-05-20 11:58 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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by YuFei Wed, 2020-04-22 17:27 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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by amelie.stein Mon, 2020-09-28 10:41 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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by matteoferla Thu, 2020-10-22 01:27 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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by vmulligan Mon, 2020-06-29 13:09 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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by matteoferla Sat, 2020-06-20 03:56 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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by Nicole Deng Sat, 2020-06-06 06:40 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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by Michele.Bonus Sun, 2020-08-30 23:06 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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by smlewis Fri, 2020-09-04 11:25 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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by Smbat Thu, 2020-07-30 03:07 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
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by matteoferla Tue, 2020-06-23 10:58 |
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Error when trying to thread target sequence over template pdbs, partial_thread.static.macosclangrelease not working properly by DGR95 » Wed, 2020-04-15 14:42 |
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by DGR95 Fri, 2020-04-17 11:25 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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by chrisHKL Mon, 2020-02-17 09:12 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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by rohi Mon, 2020-09-07 15:24 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
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by bjharris Wed, 2020-09-09 20:04 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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by pedro.guillem Wed, 2020-06-24 04:49 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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by mxp Wed, 2020-07-08 23:25 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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by wentlewi Sat, 2020-05-16 08:06 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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by pedro.guillem Wed, 2020-06-24 04:41 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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by smlewis Wed, 2020-03-04 07:40 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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by vmulligan Sat, 2020-04-11 17:40 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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by fgomes Fri, 2019-11-22 19:12 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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by matteoferla Sun, 2020-03-22 05:29 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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by nannemdp Tue, 2020-05-26 06:33 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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by yinasun Fri, 2019-07-26 02:17 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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by jadolfbr Sun, 2020-05-03 19:38 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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by sheehajh Fri, 2020-02-21 12:41 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
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by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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by matteoferla Sat, 2020-05-23 03:09 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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by jadolfbr Thu, 2020-09-24 10:04 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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by rmoretti Wed, 2020-04-01 10:10 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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by Danielsebas Tue, 2019-09-24 05:03 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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by matteoferla Tue, 2020-04-14 03:36 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
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by jalan Thu, 2020-04-23 05:19 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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by renedominik Wed, 2020-02-12 06:16 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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by jkleman Thu, 2020-01-16 11:05 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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by matteoferla Wed, 2020-01-01 04:30 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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by dfcoelho Tue, 2020-02-04 07:45 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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by j.schmue Tue, 2020-01-28 13:31 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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by karenjgonzalez Wed, 2019-07-31 12:35 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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by Anpu Thu, 2018-09-27 23:36 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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by ylwang Tue, 2020-03-24 19:35 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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by matteoferla Tue, 2020-08-11 10:00 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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by BioPython Sun, 2019-05-12 20:07 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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400 |
by rmoretti Mon, 2019-11-04 12:54 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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by dfcoelho Wed, 2019-11-20 05:39 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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by rmoretti Tue, 2019-07-09 15:59 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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by ahmadkhalifa Fri, 2018-05-04 07:50 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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by matteoferla Thu, 2020-05-14 07:01 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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by yangshen12 Fri, 2018-10-26 12:34 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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416 |
by danpf Tue, 2019-09-03 10:39 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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by Rick_Baker Wed, 2019-09-11 15:35 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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by ela Fri, 2018-08-31 02:53 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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420 |
by rmoretti Mon, 2019-08-26 15:00 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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by rmoretti Mon, 2019-08-26 14:52 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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by pmit Thu, 2018-05-03 01:48 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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426 |
by zhoubin Fri, 2019-01-04 13:14 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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429 |
by bazzoli Wed, 2018-10-10 01:59 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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432 |
by rlwoltz Mon, 2019-03-11 18:32 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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436 |
by rmoretti Wed, 2019-09-18 10:49 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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by ac.research Fri, 2020-02-14 23:33 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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by smlewis Fri, 2019-06-28 13:56 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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440 |
by smlewis Wed, 2019-05-29 13:21 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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by rmoretti Mon, 2019-07-08 08:05 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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by obdulia Wed, 2018-04-18 00:45 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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by frankfurter1 Wed, 2018-05-09 04:40 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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450 |
by G Mustafa Tue, 2020-01-21 06:04 |
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