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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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by hdelrisco Wed, 2019-06-19 15:43 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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by smlewis Wed, 2019-05-29 13:21 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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by jadolfbr Wed, 2019-06-12 20:17 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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by weifulei Sun, 2019-05-05 19:56 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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by weifulei Sun, 2019-05-05 19:56 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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by BioPython Sun, 2019-05-12 20:07 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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by weifulei Mon, 2019-05-20 21:18 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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by sujigeorge1979 Fri, 2019-06-14 21:11 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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by vmulligan Tue, 2019-03-26 11:23 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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by rmoretti Sat, 2019-03-30 12:10 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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by asbelx Sat, 2019-04-13 01:13 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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by connyyu Thu, 2019-04-18 03:26 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
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by jeliazkov Fri, 2019-05-03 07:00 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
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by rmoretti Wed, 2019-04-03 10:03 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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by vmulligan Mon, 2019-04-08 14:49 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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by rmoretti Wed, 2019-04-03 09:31 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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by ziheng@mit.edu Thu, 2019-04-25 14:31 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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by rlwoltz Mon, 2019-03-11 18:32 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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by johnnytam100 Wed, 2019-05-15 18:45 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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by ahmadkhalifa Fri, 2018-12-28 00:28 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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by yifeili1983 Mon, 2019-04-15 22:34 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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by vmulligan Tue, 2019-03-26 11:30 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
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by AJVincelli Sun, 2018-11-25 11:09 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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by Anpu Thu, 2018-09-27 23:36 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
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by rmoretti Wed, 2019-04-03 09:58 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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by zhoubin Fri, 2019-01-04 13:14 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
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by rmoretti Wed, 2018-11-21 14:01 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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by yangshen12 Fri, 2018-10-26 12:34 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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by a.book Wed, 2018-10-03 15:56 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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by Jacky010 Tue, 2019-05-14 01:24 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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by David Tue, 2019-01-22 12:23 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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by rmoretti Fri, 2019-03-29 14:43 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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by rlwoltz Fri, 2019-02-01 10:31 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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by ela Fri, 2018-08-31 02:53 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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by rmoretti Mon, 2018-10-08 11:20 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
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by jadolfbr Fri, 2018-11-09 09:17 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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by bazzoli Wed, 2018-10-10 01:59 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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by rmoretti Wed, 2018-11-21 14:14 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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by ac.research Mon, 2018-05-14 08:27 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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by ahmadkhalifa Fri, 2018-05-04 07:50 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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by pmit Thu, 2018-05-03 01:48 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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by dasdevashishdas Fri, 2018-10-12 00:55 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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by frankfurter1 Wed, 2018-05-09 04:40 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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by rmoretti Sat, 2019-03-30 12:12 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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by rmoretti Fri, 2018-08-03 12:37 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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by obdulia Wed, 2018-04-18 00:45 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
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by Swillard Sun, 2018-07-01 13:07 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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by jadolfbr Tue, 2019-04-16 09:15 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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by dfcoelho Tue, 2018-10-16 08:35 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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by rmoretti Wed, 2018-08-01 16:04 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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by ziqi1234 Thu, 2018-05-24 02:18 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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by bio_james Wed, 2017-12-13 09:13 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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by smlewis Thu, 2018-06-28 13:34 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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by ipetrik_ambry Wed, 2017-12-06 13:11 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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by Ronghai Cheng Tue, 2018-11-13 21:56 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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by jkleman Tue, 2018-07-31 13:19 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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by ipetrik_ambry Mon, 2017-10-30 17:03 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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by ziqi1234 Fri, 2017-11-10 04:04 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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by ziqi1234 Tue, 2017-11-21 05:55 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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by smlewis Tue, 2018-08-07 16:59 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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by jferrie Mon, 2018-04-23 15:25 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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by smlewis Tue, 2018-06-19 10:31 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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by rmoretti Mon, 2018-02-12 09:39 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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by matteoferla Thu, 2018-09-13 06:21 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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by smlewis Mon, 2018-11-19 13:20 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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by rmoretti Mon, 2018-03-19 09:08 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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by rmoretti Fri, 2018-08-03 08:59 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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by rmoretti Mon, 2018-08-20 11:51 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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by rmoretti Thu, 2018-06-28 14:22 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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by Martin Floor Tue, 2018-08-28 13:21 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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by rmoretti Thu, 2018-02-22 09:29 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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by ac.research Sat, 2017-11-18 06:54 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
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by smlewis Mon, 2018-12-31 08:58 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
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by rmoretti Wed, 2018-01-31 14:57 |
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Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
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by rmoretti Wed, 2018-11-21 13:50 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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by orionshih Tue, 2018-05-01 21:16 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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380 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
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by smlewis Mon, 2018-03-12 09:57 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
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by jkleman Sat, 2018-04-14 10:55 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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385 |
by rmoretti Fri, 2018-08-03 08:42 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
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385 |
by matteoferla Thu, 2018-10-04 01:30 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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by dasdevashishdas Thu, 2018-08-23 18:02 |
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Incorporating Rosetta Binary and Database to a Web Server Pipeline by smkim » Fri, 2018-09-28 20:35 |
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by rmoretti Fri, 2018-11-09 12:22 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
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by rmoretti Mon, 2018-01-15 14:35 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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by rmoretti Thu, 2018-06-28 14:28 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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by rmoretti Mon, 2018-02-05 15:44 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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by SenyorDrew Mon, 2017-11-20 13:27 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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by Loki01 Wed, 2017-12-13 05:27 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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by dasdevashishdas Thu, 2018-09-27 03:35 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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by SenyorDrew Tue, 2016-12-13 14:29 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
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by SergeyP Mon, 2018-11-12 09:19 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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by rmoretti Wed, 2017-09-06 08:47 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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by eminegenetics Wed, 2018-07-18 13:48 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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419 |
by rmoretti Mon, 2017-08-21 09:55 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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419 |
by rmoretti Sat, 2018-03-17 10:43 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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by smlewis Mon, 2018-04-16 16:32 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
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by jeliazkov Tue, 2017-07-18 09:51 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
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433 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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