You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:16 |
0 |
5,359 |
by admin Fri, 2015-09-04 16:17 |
|
|
selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
43 |
by matteoferla Tue, 2020-08-11 10:00 |
|
|
I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
0 |
43 |
by matteoferla Wed, 2020-07-22 03:08 |
|
|
Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
52 |
by pedro.guillem Thu, 2020-07-23 03:45 |
|
|
Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
2 |
63 |
by Smbat Thu, 2020-07-30 03:07 |
|
|
"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
63 |
by matteoferla Tue, 2020-07-14 01:51 |
|
|
Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
1 |
64 |
by matteoferla Fri, 2020-07-24 03:06 |
|
|
Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
64 |
by jeanramos Mon, 2020-07-13 00:56 |
|
|
Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
68 |
by LTJ Mon, 2020-07-06 14:13 |
|
|
Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
68 |
by karolcia1010 Wed, 2020-06-17 11:19 |
|
|
reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
80 |
by hajar Wed, 2020-06-10 11:17 |
|
|
Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
81 |
by kalabharath Mon, 2020-06-29 06:59 |
|
|
error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
83 |
by windmill Thu, 2020-06-18 21:32 |
|
|
How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
87 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
|
|
Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
87 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
|
|
Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
94 |
by adityapadhi Wed, 2020-06-24 01:29 |
|
|
Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
1 |
97 |
by matteoferla Sat, 2020-06-20 03:56 |
|
|
simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
98 |
by vmulligan Mon, 2020-06-29 13:09 |
|
|
patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
106 |
by matteoferla Tue, 2020-06-23 10:58 |
|
|
where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
106 |
by mxp Wed, 2020-07-08 23:25 |
|
|
Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
112 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
|
|
BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
0 |
112 |
by pedro.guillem Wed, 2020-06-24 04:42 |
|
|
Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
0 |
112 |
by matteoferla Fri, 2020-04-10 02:40 |
|
|
str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
116 |
by pedro.guillem Wed, 2020-06-24 04:49 |
|
|
Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
118 |
by Nicole Deng Sat, 2020-06-06 06:40 |
|
|
Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
121 |
by Kazu Wed, 2020-05-20 11:58 |
|
|
Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
123 |
by pedro.guillem Thu, 2020-05-14 04:22 |
|
|
ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
0 |
130 |
by YuFei Wed, 2020-04-22 17:27 |
|
|
Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
144 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
|
|
Error when trying to thread target sequence over template pdbs, partial_thread.static.macosclangrelease not working properly by DGR95 » Wed, 2020-04-15 14:42 |
0 |
147 |
by DGR95 Fri, 2020-04-17 11:25 |
|
|
Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
1 |
151 |
by pedro.guillem Wed, 2020-06-24 04:41 |
|
|
Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
152 |
by matteoferla Sat, 2020-05-23 03:09 |
|
|
Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
152 |
by wentlewi Sat, 2020-05-16 08:06 |
|
|
Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
0 |
162 |
by chrisHKL Mon, 2020-02-17 09:12 |
|
|
Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
1 |
162 |
by vmulligan Sat, 2020-04-11 17:40 |
|
|
error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
173 |
by jalan Thu, 2020-04-23 05:19 |
|
|
Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
175 |
by nannemdp Tue, 2020-05-26 06:33 |
|
|
I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
1 |
180 |
by jadolfbr Sun, 2020-05-03 19:38 |
|
|
Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
181 |
by smlewis Wed, 2020-03-04 07:40 |
|
|
Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
204 |
by rmoretti Wed, 2020-04-01 10:10 |
|
|
Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
1 |
205 |
by sheehajh Fri, 2020-02-21 12:41 |
|
|
How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
207 |
by matteoferla Thu, 2020-05-14 07:01 |
|
|
MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
218 |
by dfcoelho Tue, 2020-02-04 07:45 |
|
|
SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
0 |
219 |
by matteoferla Sun, 2020-03-22 05:29 |
|
|
I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
220 |
by ylwang Tue, 2020-03-24 19:35 |
|
|
Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
221 |
by fgomes Fri, 2019-11-22 19:12 |
|
|
mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
222 |
by jkleman Thu, 2020-01-16 11:05 |
|
|
use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
226 |
by matteoferla Tue, 2020-04-14 03:36 |
|
|
Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
1 |
244 |
by renedominik Wed, 2020-02-12 06:16 |
|
|
Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
247 |
by j.schmue Tue, 2020-01-28 13:31 |
|
|
MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
257 |
by yinasun Fri, 2019-07-26 02:17 |
|
|
What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
264 |
by matteoferla Wed, 2020-01-01 04:30 |
|
|
how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
0 |
272 |
by Danielsebas Tue, 2019-09-24 05:03 |
|
|
Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
1 |
293 |
by rmoretti Mon, 2019-11-04 12:54 |
|
|
Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
293 |
by ac.research Fri, 2020-02-14 23:33 |
|
|
Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
2 |
299 |
by G Mustafa Tue, 2020-01-21 06:04 |
|
|
Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
300 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
|
|
Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
302 |
by dfcoelho Wed, 2019-11-20 05:39 |
|
|
What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
310 |
by matteoferla Wed, 2020-01-29 12:18 |
|
|
Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
312 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
|
|
Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
314 |
by Rick_Baker Wed, 2019-09-11 15:35 |
|
|
How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
326 |
by BioPython Sun, 2019-05-12 20:07 |
|
|
AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
1 |
331 |
by danpf Tue, 2019-09-03 10:39 |
|
|
How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
332 |
by rmoretti Tue, 2019-07-09 15:59 |
|
|
How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
332 |
by Anpu Thu, 2018-09-27 23:36 |
|
|
How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
335 |
by rmoretti Wed, 2019-09-18 10:49 |
|
|
Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
340 |
by rmoretti Mon, 2019-08-26 14:52 |
|
|
MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
340 |
by rmoretti Mon, 2019-08-26 15:00 |
|
|
Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
1 |
344 |
by jadolfbr Thu, 2019-08-29 14:29 |
|
|
Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
351 |
by smlewis Wed, 2019-12-04 13:07 |
|
|
Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
363 |
by smlewis Fri, 2019-06-28 13:56 |
|
|
IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
363 |
by rmoretti Mon, 2019-07-08 08:05 |
|
|
File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
364 |
by smlewis Wed, 2019-05-29 13:21 |
|
|
Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
368 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
|
|
crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
371 |
by yangshen12 Fri, 2018-10-26 12:34 |
|
|
alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
0 |
374 |
by rlwoltz Mon, 2019-03-11 18:32 |
|
|
Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
1 |
374 |
by vmulligan Tue, 2019-03-26 11:23 |
|
|
MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
376 |
by rmoretti Mon, 2019-08-26 15:01 |
|
|
incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
379 |
by ela Fri, 2018-08-31 02:53 |
|
|
protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
382 |
by dfcoelho Tue, 2019-11-19 10:16 |
|
|
restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
386 |
by pmit Thu, 2018-05-03 01:48 |
|
|
type of docking by rohi » Mon, 2020-07-06 06:55 |
11 |
386 |
by rohi Sun, 2020-07-26 17:03 |
|
|
Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
387 |
by zhoubin Fri, 2019-01-04 13:14 |
|
|
env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
389 |
by bazzoli Wed, 2018-10-10 01:59 |
|
|
FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
390 |
by obdulia Wed, 2018-04-18 00:45 |
|
|
How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
391 |
by rmoretti Tue, 2019-07-09 15:48 |
|
|
RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
399 |
by ac.research Mon, 2018-05-14 08:27 |
|
|
intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
399 |
by vmulligan Mon, 2019-04-08 14:49 |
|
|
Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
403 |
by rmoretti Sat, 2019-03-30 12:10 |
|
|
Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
404 |
by ylwang Sat, 2019-11-23 06:26 |
|
|
Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
406 |
by rmoretti Wed, 2019-04-03 10:03 |
|
|
Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
409 |
by sayan500 Tue, 2019-07-30 22:20 |
|
|
Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
417 |
by frankfurter1 Wed, 2018-05-09 04:40 |
|
|
LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
1 |
418 |
by ziheng@mit.edu Thu, 2019-04-25 14:31 |
|
|
problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
419 |
by connyyu Thu, 2019-04-18 03:26 |
|
|
What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
420 |
by bio_james Wed, 2017-12-13 09:13 |
|
|
MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
2 |
421 |
by jalan Sun, 2020-04-12 08:01 |
|
|
DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
4 |
422 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
|
|
I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
4 |
428 |
by matteoferla Sat, 2020-03-21 09:14 |
|
|
lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
440 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
Log in to post new content in the forum.
