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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,205 by admin
Fri, 2015-09-04 16:17
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
0
4 by yliang20
Mon, 2022-08-08 16:59
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
19 by mrosam
Mon, 2022-08-08 01:37
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
3
47 by almeida85
Mon, 2022-08-08 00:32
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
0
64 by mb0261
Wed, 2022-07-27 07:00
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
0
67 by mb0261
Thu, 2022-06-30 10:48
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
75 by Karthik
Wed, 2022-07-13 23:45
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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82 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
91 by matteoferla
Wed, 2022-07-20 10:33
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
100 by rmoretti
Tue, 2022-06-28 11:06
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
101 by guowuchen
Thu, 2022-06-23 04:43
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
103 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Renumbering PDB
by jgustat » Wed, 2022-07-27 13:37
2
109 by jgustat
Thu, 2022-07-28 10:00
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
110 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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114 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
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119 by Hyun
Tue, 2022-03-29 19:53
Normal topic De Novo backbone generation vs Rosetta Match for enzdes and ligand binding.
by csvajda » Thu, 2022-06-30 09:55
2
120 by csvajda
Thu, 2022-06-30 16:26
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
122 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
128 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
134 by matteoferla
Fri, 2022-06-17 10:38
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
134 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
137 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
0
145 by amcallister
Fri, 2022-04-22 11:26
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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157 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
162 by jgustat
Fri, 2022-07-01 13:26
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
174 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
181 by ssrb
Tue, 2022-07-05 11:07
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
183 by rmoretti
Thu, 2022-04-07 07:51
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
195 by ajasja
Mon, 2022-05-23 07:19
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
199 by asbelx
Mon, 2022-06-06 23:15
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
231 by e3lm
Fri, 2022-05-06 16:10
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
231 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
247 by matteoferla
Fri, 2022-07-01 13:49
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
253 by sia
Tue, 2022-07-05 05:47
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
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257 by tlopes
Wed, 2022-01-05 18:19
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
266 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
267 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
268 by matteoferla
Fri, 2022-06-03 01:09
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
0
272 by tisozaki
Tue, 2021-12-14 17:16
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
278 by LanMei
Tue, 2022-03-22 20:45
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
283 by rjacak
Thu, 2022-03-31 10:53
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
285 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
0
302 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
305 by lsong2
Thu, 2021-11-18 10:31
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
305 by vmulligan
Thu, 2022-03-03 18:48
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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335 by Soler
Sat, 2022-01-15 22:09
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
375 by Soler
Sat, 2021-11-20 23:41
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
1
384 by rmoretti
Fri, 2022-02-18 11:14
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
387 by CameronJA
Mon, 2021-06-14 16:12
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
389 by ajasja
Thu, 2021-11-18 00:33
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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390 by Antonia
Wed, 2021-06-16 12:30
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
392 by ate
Wed, 2021-06-16 19:19
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
392 by rohi
Fri, 2021-06-25 10:29
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
395 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
400 by guowuchen
Wed, 2022-03-30 04:20
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
404 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
410 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
421 by cryosky
Sun, 2021-09-26 13:24
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
428 by gezmi
Sat, 2021-11-06 15:26
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
433 by csvajda
Mon, 2022-03-07 07:46
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
439 by dkesar
Fri, 2021-06-04 19:09
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
0
460 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
462 by matteoferla
Mon, 2021-12-13 02:27
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
464 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
467 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
494 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
498 by Corvin
Wed, 2021-05-19 07:54
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
498 by rvandamme
Mon, 2021-02-01 13:39
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
507 by nannemdp
Sun, 2021-06-06 09:26
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
515 by lanselibai
Wed, 2021-06-23 14:53
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
517 by cryosky
Fri, 2021-09-17 22:04
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
529 by pci112
Mon, 2021-04-12 08:12
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
530 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
531 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
533 by jeanramos
Mon, 2020-07-13 00:56
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
0
541 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
0
542 by rohi
Mon, 2021-03-15 06:31
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
544 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
552 by taylorjones
Wed, 2021-06-09 16:30
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
552 by ate
Sat, 2021-05-01 02:22
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
553 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
558 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
559 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
563 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
569 by matteoferla
Fri, 2021-02-26 07:12
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
569 by matteoferla
Wed, 2020-07-22 03:08
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
579 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Help deciphering an input
by Elijah_Hix » Wed, 2021-09-22 11:12
2
587 by Elijah_Hix
Thu, 2021-09-23 10:13
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
587 by asbelx
Wed, 2021-09-08 23:19
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
588 by haom
Tue, 2020-09-01 18:50
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
589 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
596 by rmoretti
Wed, 2021-06-23 02:17
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
596 by ate
Sat, 2021-05-01 02:52
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
597 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
598 by LTJ
Mon, 2020-07-06 14:13
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
605 by YuFei
Wed, 2020-04-22 17:27
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
609 by nferruz
Fri, 2020-08-28 06:05
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
609 by hong wei
Thu, 2021-11-25 02:46
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
613 by rmoretti
Wed, 2021-07-14 07:07
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
615 by zivben
Sat, 2021-07-31 08:16

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