You are here

Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
931 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,009 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
458 by rmoretti
Thu, 2018-06-28 14:22
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
184 by rmoretti
Mon, 2019-08-26 15:01
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,014 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,259 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,079 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,201 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
714 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
1,384 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
1,812 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
1,450 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
504 by matteoferla
Thu, 2018-09-13 06:21
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,004 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
983 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
802 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,442 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,182 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,261 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
658 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
255 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,259 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
2,709 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
669 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
552 by jkleman
Sat, 2018-04-14 10:55
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
296 by connyyu
Thu, 2019-04-18 03:26
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,043 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,085 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
2,916 by rmoretti
Tue, 2015-11-10 11:52
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,075 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
367 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
1,259 by smlewis
Mon, 2014-04-21 06:47
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,383 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
536 by rmoretti
Wed, 2017-09-06 08:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
998 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,322 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
1,411 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,082 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
828 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,251 by rmoretti
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,163 by frichter
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,159 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
893 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
389 by rmoretti
Wed, 2018-11-21 14:14
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,025 by smlewis
Mon, 2014-04-21 06:47
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
1,524 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
1,362 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
2,942 by rmoretti
Sat, 2014-03-22 11:40
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,091 by rmoretti
Wed, 2015-02-18 09:17
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
173 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,238 by rmoretti
Thu, 2014-10-16 10:33
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
877 by smlewis
Sun, 2016-01-10 10:02
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,290 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
550 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
480 by jkleman
Tue, 2018-07-31 13:19
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
3,877 by rmoretti
Tue, 2014-07-01 12:45
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
477 by ac.research
Sat, 2017-11-18 06:54
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
116 by matteoferla
Wed, 2020-01-01 04:30
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
3,951 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
1,804 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
538 by rmoretti
Mon, 2017-08-21 09:55
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
1,425 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
834 by jadolfbr
Fri, 2016-02-05 15:32
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
907 by rmoretti
Tue, 2015-10-27 08:46
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,133 by smlewis
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,262 by smlewis
Mon, 2014-04-21 06:47
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
2,480 by smlewis
Mon, 2014-04-21 06:47
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
987 by smlewis
Mon, 2014-04-21 06:48
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,167 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,021 by rmoretti
Mon, 2015-05-25 11:07
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
754 by rmoretti
Wed, 2016-06-29 10:20
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,056 by smlewis
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
1,339 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
290 by rmoretti
Wed, 2019-04-03 09:31
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
1,450 by smlewis
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,281 by smlewis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,747 by smlewis
Tue, 2014-12-23 13:58
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
866 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
685 by smlewis
Mon, 2018-04-16 16:32
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
303 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,283 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
1
419 by dfcoelho
Tue, 2018-10-16 08:35
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,227 by rmoretti
Tue, 2014-06-10 11:34
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
1,423 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
1,197 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
833 by rmoretti
Mon, 2017-05-15 09:03
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
218 by smlewis
Wed, 2019-05-29 13:21
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,451 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
2,684 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
348 by rmoretti
Wed, 2018-11-21 14:01
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
1,824 by smlewis
Fri, 2016-07-22 07:31
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
502 by rmoretti
Fri, 2018-08-03 08:59
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,234 by rmoretti
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General