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Rosetta 3 - General

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Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,289 by libai2098
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
1,255 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
1,945 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
1,397 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
990 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,204 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,031 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
814 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,122 by smlewis
Mon, 2014-04-21 06:48
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
842 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
599 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
966 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,135 by rmoretti
Mon, 2014-04-21 06:48
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,084 by jtmacd
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
769 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
555 by rmoretti
Tue, 2017-03-28 09:02
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
171 by vmulligan
Mon, 2019-04-08 14:49
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
953 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,141 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,525 by rmoretti
Fri, 2014-05-23 08:09
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,204 by rmoretti
Fri, 2015-07-03 12:58
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,304 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
142 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,505 by rmoretti
Thu, 2015-12-03 15:14
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
77 by danpf
Tue, 2019-09-03 10:39
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,245 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
1,673 by Anonymous
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,006 by yarovoy
Wed, 2016-03-30 12:37
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,322 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
1,984 by franfdez
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,064 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
934 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,356 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
478 by rmoretti
Mon, 2018-02-05 15:44
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
986 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,100 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,175 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
919 by rmoretti
Mon, 2017-11-06 07:36
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
361 by smlewis
Tue, 2018-08-07 16:59
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
972 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
741 by rmoretti
Tue, 2016-07-12 08:43
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
81 by rmoretti
Mon, 2019-08-26 15:00
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
1,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,083 by smlewis
Fri, 2014-11-07 12:03
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
1,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
1,485 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,177 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
753 by rmoretti
Thu, 2016-09-08 07:56
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
546 by rmoretti
Sat, 2017-12-02 10:22
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
1,452 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
2,346 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,059 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
784 by ssrb
Tue, 2016-07-12 10:02
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
2,817 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
1,291 by smlewis
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,321 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,610 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
467 by smlewis
Mon, 2018-03-12 09:57
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
1
157 by vmulligan
Tue, 2019-03-26 11:23
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
1,112 by rmoretti
Tue, 2018-04-10 16:00
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
196 by rmoretti
Tue, 2019-07-09 15:57
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
1,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,643 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,080 by rmoretti
Fri, 2016-10-14 16:43
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,004 by sid
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,249 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,135 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,613 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
1,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,200 by smlewis
Mon, 2014-04-21 06:47
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
2,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,102 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
537 by rmoretti
Tue, 2018-01-30 08:29
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
520 by rmoretti
Fri, 2017-09-08 15:15
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
54 by rmoretti
Wed, 2019-09-18 10:49
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
3,809 by yuvals
Sat, 2014-06-21 02:17
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,124 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
1,370 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
1,965 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,612 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,187 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
1,354 by smlewis
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
938 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
359 by rmoretti
Mon, 2018-02-12 09:39
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,191 by smlewis
Mon, 2014-04-21 06:47
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