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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
215 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
633 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,172 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,446 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,063 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
1,354 by smlewis
Tue, 2017-04-18 08:33
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,898 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,357 by fred
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,251 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
583 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
301 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
405 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
1
35 by rmoretti
Mon, 2020-10-19 07:23
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
2,299 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
1,715 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,241 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
854 by smlewis
Wed, 2017-06-28 06:59
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
418 by smlewis
Fri, 2019-06-28 13:56
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,425 by achambe
Wed, 2016-01-13 10:46
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
494 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
1,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,205 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,531 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
393 by rmoretti
Mon, 2019-11-04 12:54
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,231 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
2,536 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,269 by smlewis
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,299 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,183 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,171 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
877 by smlewis
Wed, 2016-08-24 07:23
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
1,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
1,632 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
929 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
685 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
414 by rmoretti
Mon, 2019-08-26 14:52
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
470 by rmoretti
Wed, 2019-04-03 10:03
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
2,400 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,051 by rmoretti
Tue, 2016-09-13 07:41
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
339 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,304 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,498 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
693 by smlewis
Tue, 2018-06-19 10:31
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,490 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,402 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,276 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
930 by rmoretti
Thu, 2016-04-28 15:57
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
1,640 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
932 by rmoretti
Wed, 2017-03-29 12:37
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
474 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,275 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,068 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
663 by jyy
Mon, 2020-01-13 17:19
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,411 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,161 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,190 by frichter
Mon, 2014-04-21 06:47
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
1,444 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
560 by rmoretti
Tue, 2019-07-09 12:31
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
1,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,301 by yuvals
Mon, 2014-10-06 15:02
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
555 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,090 by nawsad
Fri, 2014-06-20 03:00
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,054 by rmoretti
Thu, 2015-08-06 09:28
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
1,026 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
937 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,168 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
884 by rmoretti
Thu, 2018-06-28 14:28
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,181 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,432 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
1,503 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,175 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
1,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
1,646 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,174 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,414 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,243 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,032 by rmoretti
Sat, 2015-09-19 13:20
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,474 by smlewis
Mon, 2014-04-21 06:47
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,330 by smlewis
Mon, 2014-04-21 06:48
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,071 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
860 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
189 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,401 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
999 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
775 by rmoretti
Tue, 2017-03-28 09:02
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
470 by vmulligan
Mon, 2019-04-08 14:49
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
204 by matteoferla
Tue, 2020-06-23 10:58
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,387 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,366 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,847 by rmoretti
Fri, 2014-05-23 08:09
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