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Rosetta 3 - General
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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124 |
by JSK Tue, 2024-03-19 09:21 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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956 |
by YuFei Wed, 2020-04-22 17:27 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,224 |
by jackzzs Mon, 2023-05-15 03:17 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,644 |
by myang Mon, 2014-04-21 06:47 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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817 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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531 |
by biotech Wed, 2022-10-26 11:17 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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936 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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554 |
by Jane_002 Tue, 2023-08-08 21:07 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,184 |
by fgomes Fri, 2019-11-22 19:12 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,561 |
by ctaylor Mon, 2014-04-21 06:47 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,779 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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1,159 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,223 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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892 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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451 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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913 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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864 |
by Corvin Wed, 2021-05-19 07:54 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,791 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,343 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,463 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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909 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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812 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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539 |
by SebastianBB Mon, 2022-11-21 08:33 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,719 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,616 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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888 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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523 |
by liuwenxi Tue, 2022-08-09 08:33 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
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227 |
by Eden Sat, 2023-11-18 02:39 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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1,102 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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1,112 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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539 |
by ialvy Tue, 2022-08-30 00:00 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,734 |
by exchhattu Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,533 |
by gobli033 Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,561 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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1,067 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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515 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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Scripts and/or strategies for saturation mutagenesis simulations? by drinker615 » Tue, 2024-04-16 18:43 |
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20 |
by drinker615 Tue, 2024-04-16 18:43 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,579 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,324 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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1,209 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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502 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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390 |
by almeida85 Thu, 2023-05-25 06:18 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,461 |
by albumns Mon, 2014-04-21 06:47 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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671 |
by hanzhiz Thu, 2021-12-16 09:18 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
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1,533 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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1,014 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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540 |
by He Xiao Mon, 2022-11-07 04:10 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
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1,502 |
by tricia Mon, 2014-04-21 06:47 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,871 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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2,033 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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900 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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499 |
by mb0261 Thu, 2022-06-30 10:48 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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523 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,630 |
by sdh Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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4,221 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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2,088 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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782 |
by dkesar Fri, 2021-06-04 19:09 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,556 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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735 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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575 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,462 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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828 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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597 |
by rlwoltz Fri, 2022-04-29 15:15 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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353 |
by chenna Sun, 2023-04-23 23:52 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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680 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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569 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,400 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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756 |
by rohi Fri, 2021-06-25 10:29 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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526 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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JD3 FastRelax over MPI - crashes on relax completion/before writing output by aduffy33 » Tue, 2024-03-12 12:51 |
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142 |
by aduffy33 Tue, 2024-03-12 12:52 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,623 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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956 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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921 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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748 |
by Soler Sat, 2021-11-20 23:41 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,364 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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988 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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913 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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1,057 |
by rlwoltz Tue, 2021-08-03 23:26 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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513 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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922 |
by pci112 Mon, 2021-04-12 08:12 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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520 |
by aastha.pal Mon, 2022-06-27 09:34 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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457 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,753 |
by w107kdk Mon, 2014-04-21 06:47 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,637 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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726 |
by Soler Sat, 2022-01-15 22:09 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
1 |
2,031 |
by rmoretti Tue, 2014-07-01 12:07 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,827 |
by possu Tue, 2016-08-30 16:57 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
3,439 |
by smlewis Sun, 2017-11-19 20:08 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
1 |
1,604 |
by rmoretti Tue, 2021-02-09 09:37 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,854 |
by kaue Mon, 2014-04-21 06:47 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
1 |
4,485 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
1 |
1,238 |
by cryosky Fri, 2021-09-17 22:04 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
1 |
2,487 |
by smlewis Mon, 2014-04-21 06:47 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
1 |
2,328 |
by rmoretti Sat, 2018-03-17 10:43 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
1 |
2,306 |
by smlewis Mon, 2014-04-21 06:47 |
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RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
1 |
2,147 |
by Lati Fri, 2015-11-20 03:32 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
1 |
1,813 |
by rmoretti Thu, 2022-04-07 07:51 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
1 |
614 |
by rmoretti Thu, 2023-03-16 11:46 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,280 |
by smlewis Mon, 2014-04-21 06:47 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
2,194 |
by albumns Mon, 2014-04-21 06:47 |
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