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Rosetta 3 - General
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
3 |
3,775 |
by rmoretti Thu, 2014-04-10 07:38 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,860 |
by Robert Evans Mon, 2014-04-21 06:48 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,534 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
6,753 |
by rosa Mon, 2014-04-21 06:48 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
1,147 |
by matteoferla Mon, 2021-08-09 01:53 |
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Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
1 |
2,413 |
by wlzhang Sun, 2014-04-20 18:17 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
3,247 |
by smlewis Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
5,994 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,310 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
1 |
1,108 |
by taylorjones Wed, 2021-06-09 16:30 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
5,085 |
by smlewis Tue, 2016-08-30 13:47 |
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Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
1 |
2,314 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
2 |
2,825 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
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2,201 |
by smlewis Mon, 2014-04-21 06:47 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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909 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,789 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
2 |
3,790 |
by smlewis Mon, 2014-04-21 06:47 |
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build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
1 |
2,024 |
by smlewis Mon, 2014-04-21 06:47 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
8 |
7,582 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
3,040 |
by zdn3023 Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
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2,013 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
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2,974 |
by reddybg Mon, 2014-04-21 06:47 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,925 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
2 |
3,279 |
by jrcf Tue, 2016-05-03 17:40 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
0 |
1,058 |
by rlwoltz Tue, 2021-08-03 23:26 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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1,787 |
by rmoretti Mon, 2018-02-05 15:44 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
3,908 |
by rmoretti Wed, 2015-12-16 11:22 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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6,103 |
by obdulia Wed, 2016-07-13 09:11 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
6,102 |
by fukamitka Mon, 2014-04-21 06:48 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
4,656 |
by phanvy Thu, 2014-10-16 18:54 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
2 |
834 |
by varunmc99 Fri, 2023-05-12 11:49 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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685 |
by rmoretti Mon, 2023-02-06 14:42 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
2 |
2,412 |
by benhardy Fri, 2021-05-07 07:22 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,871 |
by jadolfbr Sun, 2016-12-11 10:53 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
4,295 |
by rmoretti Mon, 2018-03-19 12:35 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
6,066 |
by cossio Thu, 2015-01-29 11:50 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
9 |
9,352 |
by wangyr Mon, 2014-04-21 06:47 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
3,331 |
by nannemdp Fri, 2021-02-05 06:49 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
6 |
5,465 |
by byin Mon, 2014-04-21 06:47 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
3,461 |
by aaxx Wed, 2019-11-06 01:44 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
1 |
1,616 |
by Loki01 Wed, 2017-12-13 05:27 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
3,015 |
by doranhen Mon, 2014-04-21 06:47 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,712 |
by rmoretti Fri, 2017-04-14 08:37 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
1 |
2,258 |
by smlewis Mon, 2014-04-21 06:47 |
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Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
1 |
2,618 |
by rmoretti Tue, 2014-02-11 06:24 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
8 |
1,812 |
by rmoretti Thu, 2023-02-16 13:48 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
2,849 |
by barak Mon, 2014-04-21 06:47 |
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Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
24,684 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,881 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Canceling jobs - RosettaDock5.0 by katie » Tue, 2024-04-09 12:30 |
0 |
41 |
by katie Tue, 2024-04-09 12:30 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,804 |
by road runner Tue, 2015-12-01 10:08 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
3 |
1,634 |
by csvajda Mon, 2022-03-07 07:46 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
7,311 |
by ac.research Fri, 2017-08-18 00:57 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
3,970 |
by smlewis Tue, 2018-06-12 10:54 |
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Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
0 |
354 |
by paulbo Mon, 2024-02-05 01:25 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
3,493 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,617 |
by vasek Mon, 2014-04-21 06:48 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,422 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
5 |
3,093 |
by rmoretti Fri, 2020-11-06 08:04 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,792 |
by SergeyP Thu, 2016-02-04 00:07 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
9 |
11,352 |
by rmoretti Thu, 2015-04-30 16:25 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
10,566 |
by rmoretti Mon, 2015-02-09 09:09 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
0 |
348 |
by seamoon Wed, 2023-05-24 07:46 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
2,551 |
by rmoretti Mon, 2014-04-21 06:47 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
2 |
4,828 |
by aneamtu Thu, 2018-01-18 00:56 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
2 |
3,099 |
by exchhattu Mon, 2014-04-21 06:47 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,724 |
by MarkW Fri, 2015-07-03 15:36 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
1 |
5,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,419 |
by rmoretti Sat, 2019-03-30 12:12 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
2,330 |
by duz Thu, 2021-04-01 09:34 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
1 |
819 |
by rmoretti Mon, 2022-09-12 06:58 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,956 |
by Apiwat Thu, 2014-04-17 09:56 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
1 |
2,212 |
by nawsad Fri, 2014-06-20 02:48 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
3 |
4,527 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,674 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
2 |
2,948 |
by justin Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,558 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,957 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
3,057 |
by attesor Fri, 2014-10-31 04:23 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
7,168 |
by ritacc18 Mon, 2014-04-21 06:47 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,464 |
by albumns Mon, 2014-04-21 06:47 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
5 |
5,002 |
by w107kdk Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,452 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
915 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
1 |
1,497 |
by brownbp1 Tue, 2021-02-09 12:12 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,561 |
by ctaylor Mon, 2014-04-21 06:47 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
1,208 |
by rmoretti Tue, 2021-04-20 13:06 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
5,719 |
by jwillis Sat, 2015-06-27 21:11 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,557 |
by justin Mon, 2014-04-21 06:47 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
9 |
8,652 |
by rmoretti Wed, 2014-09-24 09:57 |
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Collecting 3.2 documentation holes by smlewis » Wed, 2011-01-26 10:39 |
23 |
19,301 |
by FrankVerdin86 Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
1 |
3,267 |
by smlewis Tue, 2014-12-23 13:58 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,541 |
by smlewis Fri, 2016-07-22 07:31 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
4,382 |
by freedman Mon, 2017-03-06 13:24 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
6,361 |
by rmoretti Thu, 2016-04-28 16:15 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
4,845 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,450 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
0 |
922 |
by Sunidhi Sun, 2020-11-01 11:01 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
4,640 |
by renedominik Mon, 2014-04-21 06:47 |
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