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Rosetta 3 - General

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Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
1,380 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,024 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
1,918 by reddybg
Mon, 2014-04-21 06:47
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
1,239 by jrcf
Tue, 2016-05-03 17:40
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
484 by rmoretti
Mon, 2018-02-05 15:44
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,691 by rmoretti
Wed, 2015-12-16 11:22
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
2,439 by obdulia
Wed, 2016-07-13 09:11
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
2,810 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,501 by phanvy
Thu, 2014-10-16 18:54
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
0
286 by Swillard
Sun, 2018-07-01 13:07
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
1,114 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
793 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
2,993 by cossio
Thu, 2015-01-29 11:50
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
4,866 by wangyr
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
2,508 by byin
Mon, 2014-04-21 06:47
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
2
638 by rmoretti
Mon, 2018-01-15 14:23
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
483 by Loki01
Wed, 2017-12-13 05:27
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
1,419 by doranhen
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
756 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
1,222 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,456 by barak
Mon, 2014-04-21 06:47
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10
26
11,250 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,188 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,125 by road runner
Tue, 2015-12-01 10:08
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
1,805 by ac.research
Fri, 2017-08-18 00:57
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
874 by smlewis
Tue, 2018-06-12 10:54
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
1,562 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
886 by vasek
Mon, 2014-04-21 06:48
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,619 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
6,049 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
5,472 by rmoretti
Mon, 2015-02-09 09:09
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
1,376 by rmoretti
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
1,024 by aneamtu
Thu, 2018-01-18 00:56
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
1,375 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,202 by MarkW
Fri, 2015-07-03 15:36
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
2,827 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
370 by rmoretti
Sat, 2019-03-30 12:12
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
1,409 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,043 by nawsad
Fri, 2014-06-20 02:48
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
2,500 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
1,395 by justin
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
2,560 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
2,120 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
2,088 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,534 by attesor
Fri, 2014-10-31 04:23
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
3,941 by ritacc18
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
749 by albumns
Mon, 2014-04-21 06:47
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
2,005 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
1,877 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
788 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,541 by jwillis
Sat, 2015-06-27 21:11
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
787 by justin
Mon, 2014-04-21 06:47
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
4,096 by rmoretti
Wed, 2014-09-24 09:57
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39
23
9,300 by FrankVerdin86
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,658 by smlewis
Tue, 2014-12-23 13:58
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
1,667 by smlewis
Fri, 2016-07-22 07:31
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
1,424 by freedman
Mon, 2017-03-06 13:24
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
3,105 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
2,115 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
972 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
1,660 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
2,341 by renedominik
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
1,863 by rmoretti
Mon, 2014-04-21 06:48
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
2,562 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
995 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
1,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
840 by justin
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
2,114 by rmoretti
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
2,464 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
1,580 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,103 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,413 by Run
Mon, 2014-04-21 06:48
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
3,643 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
309 by rmoretti
Wed, 2018-11-21 14:14
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
1,330 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
1,306 by rmoretti
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
786 by lah435
Mon, 2017-04-03 19:50
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
4,042 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
5,172 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
242 by a.book
Wed, 2018-10-03 15:56
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
12,802 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
1,722 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
4,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
2,214 by mdyini
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
1,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
1,782 by smlewis
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
1,481 by smlewis
Mon, 2014-04-21 06:47
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
874 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
1,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
236 by yangshen12
Fri, 2018-10-26 12:34
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
3,092 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
8,522 by aaj
Fri, 2016-04-22 15:20
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
1,993 by franfdez
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
1,528 by alejandro
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
2,365 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
738 by Karol
Mon, 2016-08-29 05:27
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,693 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
862 by rmoretti
Mon, 2015-03-30 16:38
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
7
3,954 by monos_morpheus
Mon, 2014-04-21 06:47
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